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Kornilova T, Glebov V, Castañeda R, Timofeeva TV. A new pseudopolymorph of berberine chloride: crystal structure and Hirshfeld surface analysis. ACTA CRYSTALLOGRAPHICA SECTION E CRYSTALLOGRAPHIC COMMUNICATIONS 2022; 78:468-472. [PMID: 35547800 PMCID: PMC9069517 DOI: 10.1107/s2056989022003309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 03/23/2022] [Indexed: 05/31/2023]
Abstract
The crystal structure of methanol solvate of berberine chloride, 9,10-dimethoxy-5,6-dihydro-2H-7λ5-[1,3]dioxolo[4,5-g]isoquinolino[3,2-a]isoquinolin-7-ylium chloride methanol monosolvate, was determined and its Hirshfeld surface analysis was performed. A new pseudopolymorph of berberine, 9,10-dimethoxy-5,6-dihydro-2H-7λ5-[1,3]dioxolo[4,5-g]isoquinolino[3,2-a]isoquinolin-7-ylium chloride methanol monosolvate, C20H18NO4+·Cl−·CH3OH, was obtained during co-crystallization of berberine chloride with malonic acid from methanol. The berberine cations form dimers, which are further packed in stacks. The title structure was compared with other reported solvates of berberine chloride: its dihydrate, tetrahydrate, and ethanol solvate hemihydrate. Hirshfeld analysis was performed to show the intermolecular interactions in the crystal structure of the title compound, and its fingerprint plots were compared with those of the already studied solvates.
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Braun DE. Supramolecular organisation of sulphate salt hydrates exemplified with brucine sulphate. CrystEngComm 2020. [DOI: 10.1039/c9ce01762c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The frequency of hydrate formation among organic sulphate salts is unravelled. Interconversion of the hydrates of brucine sulphate occurs with small changes in the relative humidity.
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Affiliation(s)
- Doris E. Braun
- Institute of Pharmacy
- University of Innsbruck
- 6020 Innsbruck
- Austria
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Sun W, Zuo L, Zhao T, Zhu Z, Shan G. Five solvates of a multicomponent pharmaceutical salt formed by berberine and diclofenac. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY 2019; 75:1644-1651. [PMID: 31802754 DOI: 10.1107/s2053229619015432] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 11/14/2019] [Indexed: 11/10/2022]
Abstract
A multicomponent pharmaceutical salt formed by the isoquinoline alkaloid berberine (5,6-dihydro-9,10-dimethoxybenzo[g]-1,3-benzodioxolo[5,6-a]quinolizinium, BBR) and the nonsteroidal anti-inflammatory drug diclofenac {2-[2-(2,6-dichloroanilino)phenyl]acetic acid, DIC} was discovered. Five solvates of the pharmaceutical salt form were obtained by solid-form screening. These five multicomponent solvates are the dihydrate (BBR-DIC·2H2O or C20H18NO4+·C14H10Cl2NO2-·2H2O), the dichloromethane hemisolvate dihydrate (BBR-DIC·0.5CH2Cl2·2H2O or C20H18NO4+·C14H10Cl2NO2-·0.5CH2Cl2·2H2O), the ethanol monosolvate (BBR-DIC·C2H5OH or C20H18NO4+·C14H10Cl2NO2-·C2H5OH), the methanol monosolvate (BBR-DIC·CH3OH or C20H18NO4+·C14H10Cl2NO2-·CH3OH) and the methanol disolvate (BBR-DIC·2CH3OH or C20H18NO4+·C14H10Cl2NO2-·2CH3OH), and their crystal structures were determined. All five solvates of BBR-DIC (1:1 molar ratio) were crystallized from different organic solvents. Solvent molecules in a pharmaceutical salt are essential components for the formation of crystalline structures and stabilization of the crystal lattices. These solvates have strong intermolecular O...H hydrogen bonds between the DIC anions and solvent molecules. The intermolecular hydrogen-bond interactions were visualized by two-dimensional fingerprint plots. All the multicomponent solvates contained intramolecular N-H...O hydrogen bonds. Various π-π interactions dominate the packing structures of the solvates.
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Affiliation(s)
- Wei Sun
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
| | - Limin Zuo
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
| | - Ting Zhao
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
| | - Zhiling Zhu
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
| | - Guangzhi Shan
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
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Zhang M, Lou B, Huang X, Huang Y. Crystal structure of 9,10-dimethoxy-5,6-dihydro-[1,3]dioxolo[4,5-g]isoquinolino[3,2-a]isoquinolin-7-ium chloride — 4-hydroxy-3-methoxybenzoic acid — water (2/1/5), C48H54N2Cl2O17. ACTA ACUST UNITED AC 2018. [DOI: 10.1515/ncrs-2017-0293] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC48H54N2Cl2O17, orthorhombic, Pnma (no. 62), a = 28.3651(8) Å, b = 22.8464(6) Å, c = 7.1341(2) Å, V = 4623.2(2) Å3, Z = 4, Rgt(F) = 0.0437, wRref(F2) = 0.1225, T = 100(2) K.
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Affiliation(s)
- Mei Zhang
- Institute of Oceanography, Ocean College, Minjiang University, Fuzhou 350108, China
| | - Benyong Lou
- Institute of Oceanography, Ocean College, Minjiang University, Fuzhou 350108, China
| | - Xiaodong Huang
- Institute of Oceanography, Ocean College, Minjiang University, Fuzhou 350108, China
| | - Yali Huang
- Institute of Oceanography, Ocean College, Minjiang University, Fuzhou 350108, China
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Singh M, Bhandary S, Bhowal R, Chopra D. Observation of bending, cracking and jumping phenomena on cooling and heating of tetrahydrate berberine chloride crystals. CrystEngComm 2018. [DOI: 10.1039/c8ce00114f] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Tetrahydrate berberine chloride crystals undergo cracking, bending and jumping on cooling as well as on heating at room temperature with a rapid conversion to a dihydrate phase.
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Affiliation(s)
- Manjeet Singh
- Crystallography and Crystal Chemistry Laboratory
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
| | - Subhrajyoti Bhandary
- Crystallography and Crystal Chemistry Laboratory
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
| | - Rohit Bhowal
- Crystallography and Crystal Chemistry Laboratory
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
| | - Deepak Chopra
- Crystallography and Crystal Chemistry Laboratory
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
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Experimental and quantum-chemical study of nucleophilic substitution mechanism in berberine. Chem Heterocycl Compd (N Y) 2016. [DOI: 10.1007/s10593-016-1810-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Pingali S, Donahue JP, Payton-Stewart F. Weak C-H···X (X = O, N) hydrogen bonds in the crystal structure of dihydroberberine. Acta Crystallogr C Struct Chem 2014; 70:388-91. [PMID: 24705054 PMCID: PMC4165590 DOI: 10.1107/s2053229614003751] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2014] [Accepted: 02/18/2014] [Indexed: 12/19/2022] Open
Abstract
Dihydroberberine (systematic name: 9,10-dimethoxy-6,8-dihydro-5H-1,3-dioxolo[4,5-g]isoquinolino[3,2-a]isoquinoline), C20H19NO4, a reduced form of pharmacologically important berberine, crystallizes from ethanol without interstitial solvent. The molecule shows a dihedral angle of 27.94 (5)° between the two arene rings at the ends of the molecule, owing to the partial saturation of the inner quinolizine ring system. Although lacking classical O-H or N-H donors, the packing in the crystalline state is clearly governed by C-H···N and C-H···O hydrogen bonds involving the two acetal-type C-H bonds of the 1,3-dioxole ring. Each dihydroberberine molecule is engaged in four hydrogen bonds with neighbouring molecules, twice as donor and twice as acceptor, thus forming a two-dimensional sheet network that lies parallel to the (100) plane.
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Affiliation(s)
- Subramanya Pingali
- Department of Chemistry, Xavier University of Louisiana, 1 Drexel Drive, Box 114, New Orleans, LA 70125, USA
| | - James P. Donahue
- Department of Chemistry, Tulane University, 6400 Freret Street, New Orleans, LA 70118-5698, USA
| | - Florastina Payton-Stewart
- Department of Chemistry, Xavier University of Louisiana, 1 Drexel Drive, Box 114, New Orleans, LA 70125, USA
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Kostakis GE, Abbas G, Anson CE, Powell AK. Inclusion of a well resolved T4(2)6(2) water tape in a H-bonded, (4,7)-binodal 3D network. CrystEngComm 2009. [DOI: 10.1039/b811376a] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Grycová L, Hulová D, Maier L, Standara S, Necas M, Lemière F, Kares R, Dostál J, Marek R. Covalent bonding of azoles to quaternary protoberberine alkaloids. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2008; 46:1127-1134. [PMID: 18781707 DOI: 10.1002/mrc.2325] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Adducts of the quaternary protoberberine alkaloids (QPA) berberine, palmatine, and coptisine were prepared with nucleophiles derived from pyrrole, pyrazole, imidazole, and 1,2,4-triazole. The products, 8-substituted 7,8-dihydroprotoberberines, were identified by mass spectrometry and 1D and 2D NMR spectroscopy, including (1)H--(15)N shift correlations at natural abundance. In addition, two adducts of QPA with chloroform and methanethiolate were characterized by using NMR data. Single-crystal X-ray structures of 8-pyrrolyl-7,8-dihydroberberine, 8-pyrazolyl-7,8-dihydroberberine, and 8-imidazolyl-7,8-dihydroberberine are also presented.
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Affiliation(s)
- Lenka Grycová
- National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5/A4, CZ-625 00 Brno, Czech Republic
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Grycová L, Dostál J, Marek R. Quaternary protoberberine alkaloids. PHYTOCHEMISTRY 2007; 68:150-75. [PMID: 17109902 DOI: 10.1016/j.phytochem.2006.10.004] [Citation(s) in RCA: 297] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2006] [Revised: 09/18/2006] [Accepted: 10/03/2006] [Indexed: 05/12/2023]
Abstract
This contribution reviews some general aspects of the quaternary iminium protoberberine alkaloids. The alkaloids represent a very extensive group of secondary metabolites with diverse structures, distribution in nature, and biological effects. The quaternary protoberberine alkaloids (QPA), derived from the 5,6-dihydrodibenzo[a,g]quinolizinium system, belong to a large class of isoquinoline alkaloids. Following a general introduction, the plant sources of QPA, their biosynthesis, and procedures for their isolation are discussed. Analytical methods and spectral data are summarized with emphasis on NMR spectroscopy. The reactivity of QPA is characterized by the sensitivity of the iminium bond CN(+) to nucleophilic attack. The addition of various nucleophiles to the protoberberine skeleton is discussed. An extended discussion of the principal chemical reactivity is included since this governs interactions with biological targets. Quaternary protoberberine alkaloids and some related compounds exhibit considerable biological activities. Recently reported structural studies indicate that the QPA interact with nucleic acids predominantly as intercalators or minor groove binders. Currently, investigations in many laboratories worldwide are focused on the antibacterial and antimalarial activity, cytotoxicity, and potential genotoxicity of QPA.
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Affiliation(s)
- Lenka Grycová
- National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5/A4, CZ-625 00 Brno, Czech Republic
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Man S, Potáček M, Nečas M, Žák Z, Dostál J. Molecular and Crystal Structures of Three Berberine Derivatives. Molecules 2001. [PMCID: PMC6236459 DOI: 10.3390/60500433] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- Stanislav Man
- Department of Organic Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, CZ-611 37 Brno, Czech Republic
| | - Milan Potáček
- Department of Organic Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, CZ-611 37 Brno, Czech Republic
- Author to whom correspondence should be addressed; E-mail:
| | - Marek Nečas
- Department of Inorganic Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, CZ-611 37 Brno, Czech Republic
| | - Zdirad Žák
- Department of Inorganic Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, CZ-611 37 Brno, Czech Republic
| | - Jiří Dostál
- Department of Biochemistry, Faculty of Medicine, Masaryk University, Komenského nám. 2, CZ-662 43 Brno, Czech Republic
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