Phase determination and extension using X-ray multiple diffraction and the maximum-entropy method

Introduction to Python Dynamic Diffraction Toolkit (PyDDT): structural refinement of single crystals via X-ray phase measurements

PyDDT is a free Python package of computer codes for exploiting X-ray dynamic multiple diffraction in single crystals. A wide range of tools are available for evaluating the usefulness of the method, planning feasible experiments, extracting phase information from experimental data and further improving model structures of known materials. Graphical tools are also useful in analytical methodologies related to the three-dimensional aspect of multiple diffraction. For general X-ray users, the PyDDT tutorials provide the insight needed to understand the principles of phase measurements and other related methodologies. Key points behind structure refinement using the current approach are presented, and the main features of PyDDT are illustrated for amino acid and filled skutterudite single crystals.

X-ray dynamical diffraction in amino acid crystals: a step towards improving structural resolution of biological molecules via physical phase measurements

X-ray phase measurements have been applied to study hydrogen bonds and radiation damage in amino acid crystals.

In this work, experimental and data analysis procedures were developed and applied for studying amino acid crystals by means of X-ray phase measurements. The results clearly demonstrated the sensitivity of invariant triplet phases to electronic charge distribution in d-alanine crystals, providing useful information for molecular dynamics studies of intermolecular forces. The feasibility of using phase measurements to investigate radiation damage mechanisms is also discussed on experimental and theoretical grounds.

Synthesis, Structure, Spectral and Electrochemical Properties, and Catalytic Use of Cobalt(III)−Oxo Cubane Clusters

Olive-green cobalt(III) complexes having the general formula Co4O4(O2CMe)4L4 (1) where L = py (1a), 4-Mepy (1b), 4-Etpy (1c), and 4-CNpy (1d) have been prepared by the H2O2 oxidation of a mixture of Co2+, MeCO2-, and pyridine or 4-substituted pyridines in a 1:2:1 molar ratio in methanol. Spectroscopic and X-ray crystallographic studies show that these complexes contain a tetrameric cubane-like core [Co4(mu3-O)4]4+ where the four cobalt atoms form an approximate tetrahedron with edge lengths of approximately 2.75 A. Each cobalt in the crystallographically determined structure of Co4(mu3-O)4(mu-O2CMe)4L4 in 1a.NaClO4.3.5H2O and 1b.3H2O is hexacoordinate. Infrared spectra of the complexes show characteristic bands near 700, 635, and 580 cm-1 due to the central cubane-like core. 1H NMR spectra of the complexes show that the dissolved species are essentially diamagnetic and also that the complexes maintain their integrity in solution. UV-vis spectra of the green solutions have been interpreted in terms of ligand-field and charge-transfer bands. The electrochemical behavior of the complexes studied by cyclic and differential pulse voltammetric techniques indicates that the [(CoIII)4(mu3-O)4]4+ core present in the complexes undergoes a reversible one-electron oxidation to the [(CoIII)3CoIV(mu3-O)4]5+ core with an E1/2 value below 1 V. This suggests that these complexes of cobalt may be suitable as catalysts for the oxidation of organic compounds. Preliminary investigations indicate that 1a has a role to play in the cobalt-catalyzed aerobic oxidation of neat ethylbenzene and p-xylene.