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Gabirondo-López J, Gabirondo-López I, Tasci ES, Madariaga G. Towards dynamically configured databases for CIFs: the new modulated structures open database at the Bilbao Crystallographic Server. J Appl Crystallogr 2024; 57:1640-1649. [PMID: 39387067 PMCID: PMC11460402 DOI: 10.1107/s1600576724007908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Accepted: 08/12/2024] [Indexed: 10/12/2024] Open
Abstract
This article presents a web-based framework to build a database without in-depth programming knowledge given a set of CIF dictionaries and a collection of CIFs. The framework consists of two main elements: the public site that displays the information contained in the CIFs in an ordered manner, and the restricted administrative site which defines how that information is stored, processed and, eventually, displayed. Thus, the web application allows users to easily explore, filter and access the data, download the original CIFs, and visualize the structures via JSmol. The modulated structures open database B-IncStrDB, the official International Union of Crystallography repository for this type of material and available through the Bilbao Crystallographic Server, has been re-implemented following the proposed framework.
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Affiliation(s)
- J. Gabirondo-López
- Department of PhysicsUniversity of the Basque Country UPV/EHU Apartado 644 48080BilbaoSpain
| | - I. Gabirondo-López
- Department of PhysicsUniversity of the Basque Country UPV/EHU Apartado 644 48080BilbaoSpain
| | - E. S. Tasci
- Department of Physics Engineering, Hacettepe University, Ankara06800, Türkiye
| | - G. Madariaga
- Department of PhysicsUniversity of the Basque Country UPV/EHU Apartado 644 48080BilbaoSpain
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Göhler F, Ramasubramanian S, Rajak SK, Rösch N, Schütze A, Wolff S, Cordova DLM, Johnson DC, Seyller T. Modulation doping and charge density wave transition in layered PbSe-VSe 2 ferecrystal heterostructures. NANOSCALE 2022; 14:10143-10154. [PMID: 35796182 DOI: 10.1039/d2nr01071b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Controlling charge carrier concentrations remains a major challenge in the application of quasi-two-dimensional materials. A promising approach is the modulation doping of transport channels via charge transfer from neighboring layers in stacked heterostructures. Ferecrystals, which are metastable layered structures created from artificial elemental precursors, are a perfect model system to investigate modulation doping, as they offer unparalleled freedom in the combination of different constituents and variable layering sequences. In this work, differently stacked combinations of rock-salt structured PbSe and VSe2 were investigated using X-ray photoelectron spectroscopy. The PbSe layers act as electron donors in all heterostructures, with about 0.1 to 0.3 donated electrons per VSe2 unit cell. While they initially retain their inherent semiconducting behavior, they themselves become metallic when combined with a larger number of VSe2 layers, as evidenced by a change of the XPS core level lineshape. Additional analysis of the valence band structure was performed for selected stacking orders at different sample temperatures to investigate a predicted charge density wave (CDW) transition. While there appear to be hints of a gap opening, the data so far is inconclusive and the application of spatially resolved techniques such as scanning tunneling microscopy is encouraged for further studies.
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Affiliation(s)
- Fabian Göhler
- Institute of Physics, Chemnitz University of Technology, 09126 Chemnitz, Germany.
- Center for Materials, Architectures and Integration of Nanomembranes (MAIN), 09126 Chemnitz, Germany
| | | | - Sanam Kumari Rajak
- Institute of Physics, Chemnitz University of Technology, 09126 Chemnitz, Germany.
| | - Niels Rösch
- Institute of Physics, Chemnitz University of Technology, 09126 Chemnitz, Germany.
| | - Adrian Schütze
- Institute of Physics, Chemnitz University of Technology, 09126 Chemnitz, Germany.
- Center for Materials, Architectures and Integration of Nanomembranes (MAIN), 09126 Chemnitz, Germany
| | - Susanne Wolff
- Institute of Physics, Chemnitz University of Technology, 09126 Chemnitz, Germany.
- Center for Materials, Architectures and Integration of Nanomembranes (MAIN), 09126 Chemnitz, Germany
| | | | - David C Johnson
- Department of Chemistry, University of Oregon, Eugene, Oregon 97401, USA
| | - Thomas Seyller
- Institute of Physics, Chemnitz University of Technology, 09126 Chemnitz, Germany.
- Center for Materials, Architectures and Integration of Nanomembranes (MAIN), 09126 Chemnitz, Germany
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Falmbigl M, Alemayehu MB, Merrill DR, Beekman M, Johnson DC. In-plane structure of ferecrystalline compounds. CRYSTAL RESEARCH AND TECHNOLOGY 2015. [DOI: 10.1002/crat.201500019] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | | | - Devin R. Merrill
- Department of Chemistry, University of Oregon; Eugene OR 97403 USA
| | - Matt Beekman
- Department of Natural Sciences, Oregon Institute of Technology; Klamath Falls OR 97601 USA
| | - David C. Johnson
- Department of Chemistry, University of Oregon; Eugene OR 97403 USA
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Smeller MM, Heideman CL, Lin Q, Beekman M, Anderson MD, Zschack P, Anderson IM, Johnson DC. Structure of Turbostratically Disordered Misfit Layer Compounds [(PbSe)0.99]1[WSe2]1, [(PbSe)1.00]1[MoSe2]1, and [(SnSe)1.03]1[MoSe2]1. Z Anorg Allg Chem 2012. [DOI: 10.1002/zaac.201200408] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Huard M, Toudic B, Rabiller P, Ecolivet C, Guérin L, Bourges P, Breczewski T, Hollingsworth MD. Confined linear molecules inside an aperiodic supramolecular crystal: the sequence of superspace phases in n-hexadecane/urea. J Chem Phys 2011; 135:204505. [PMID: 22128941 DOI: 10.1063/1.3663711] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
High-resolution studies of the host-guest inclusion compound n-hexadecane/urea are reported at atmospheric pressure, using both cold neutrons and x-ray diffraction. This intergrowth crystal presents a misfit parameter, defined by the ratio c(h)/c(g) (c(host)/c(guest)), which is temperature independent and irrational (γ = 0.486 ± 0.002) from 300 to 30 K. Three different structural phases are reported for this aperiodic crystal over this temperature range. The crystallographic superspaces are of rank 4 in phases I and II, whereas phase III is associated with an increase in rank to 5, with a supplementary misfit parameter (δ = 0.058 ± 0.002) that is constant throughout this phase. The superspace group of phase I is hexagonal P6(1)22(00γ) down to T(c1) = 149.5 ± 0.5 K; phase II, which persists down to T(c2) = 127.8 ± 0.5 K is orthorhombic P2(1)2(1)2(1)(00γ), and phase III is orthorhombic P2(1)2(1)2(1)(00γ)(00δ).
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Affiliation(s)
- M Huard
- Institut de Physique de Rennes, UMR UR1-CNRS 6251, Université de Rennes 1, 35042 Rennes, France
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Crystal structure determination of the TiSe2-based misfit layer compound (LaSe)1.20(TiSe2)2. Z KRIST-CRYST MATER 2010. [DOI: 10.1524/zkri.1997.212.8.586] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The new inorganic misfit layer compound (LaSe)1.20(TiSe2)2 was prepared by high-temperature reaction of the elements. It can be regarded as an intercalate of TiSe2 with LaSe double layers inserted into every second van der Waals gap of the TiSe2 sandwiches (stage-2 intercalate). The structure, determined by single crystal X-ray diffraction on the basis of (3 + 1)-dimensional superspace, is described by two interpenetrating, incommensurately modulated subsystems. The first subsystem comprises of paired TiSe2 sandwiches. Its basic space group is C[unk](0.5957(4), −0.0004(10), −0.189(4)) and the lattice parameters are a
11 = 3.556(2) Å, a
12 = 6.120(2) Å, a
13 = 17.876(10) Å, α
1 = 86.71(3)°, β
1 = 92.93(3)°, and γ
1 = 90.03(3)°. The second subsystem comprises of LaSe double layers with basic space group C[unk](1.679(1), 0.001(2), 0.317(6)) and unit cell dimensions a
21 = 5.969(2) Å, a
22 = 6.118(2) Å, a
23 = 17.859(9) Å, α
2 = 86.69(3)°, β
2 = 89.33(4)°, and γ
2 = 90.01(3)°. The two subsystems have the common ([unk],[unk]) plane. Refinement on 1602 reflections with I > 2.5σ(I) converged to R = 0.126 (wR = 0.155) for the average structure. Stacking disorder of TiSe2 is found corresponding to displacements of the sandwiches along the [unk]21 axis; in the final structure model 9.9(4)% of TiSe2 is rigidly shifted by ½ [unk]11.
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Lin Q, Heideman CL, Nguyen N, Zschack P, Chiritescu C, Cahill DG, Johnson DC. Designed Synthesis of Families of Misfit‐Layered Compounds. Eur J Inorg Chem 2008. [DOI: 10.1002/ejic.200800158] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Qiyin Lin
- Department of Physics, University of Oregon, 1274 University of Oregon, Eugene, OR 97403, USA
| | - Colby L. Heideman
- Department of Chemistry, University of Oregon, 1253 University of Oregon, Eugene, OR 97403, USA, Fax: +1‐541‐346‐0487
| | - Ngoc Nguyen
- Department of Chemistry, University of Oregon, 1253 University of Oregon, Eugene, OR 97403, USA, Fax: +1‐541‐346‐0487
| | - Paul Zschack
- Advanced Photon Source, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL 60439, USA
| | - Catalin Chiritescu
- Department of Materials Science and Engineering and Materials Research Laboratory, The University of Illinois, 104 S. Goodwin Ave., Urbana, IL 61801, USA
| | - David G. Cahill
- Department of Materials Science and Engineering and Materials Research Laboratory, The University of Illinois, 104 S. Goodwin Ave., Urbana, IL 61801, USA
| | - David C. Johnson
- Department of Chemistry, University of Oregon, 1253 University of Oregon, Eugene, OR 97403, USA, Fax: +1‐541‐346‐0487
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Pervov VS, Makhonina EV. Incommensurate suprastructures: new problems of inorganic solid-state chemistry. RUSSIAN CHEMICAL REVIEWS 2007. [DOI: 10.1070/rc2000v069n06abeh000573] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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