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Yu F, Liu K, Zhou H, Li M, Kong H, Zhang K, Wang X, Wang W, Xu Q, Pan Q, Wang Z, Wang Q. Finback: a web-based data collection system at SSRF biological macromolecular crystallography beamlines. JOURNAL OF SYNCHROTRON RADIATION 2024; 31:378-384. [PMID: 38241124 PMCID: PMC10914168 DOI: 10.1107/s1600577523010615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 12/12/2023] [Indexed: 01/21/2024]
Abstract
An integrated computer software system for macromolecular crystallography (MX) data collection at the BL02U1 and BL10U2 beamlines of the Shanghai Synchrotron Radiation Facility is described. The system, Finback, implements a set of features designed for the automated MX beamlines, and is marked with a user-friendly web-based graphical user interface (GUI) for interactive data collection. The Finback client GUI can run on modern browsers and has been developed using several modern web technologies including WebSocket, WebGL, WebWorker and WebAssembly. Finback supports multiple concurrent sessions, so on-site and remote users can access the beamline simultaneously. Finback also cooperates with the deployed experimental data and information management system, the relevant experimental parameters and results are automatically deposited to a database.
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Affiliation(s)
- Feng Yu
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Ke Liu
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Huan Zhou
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Minjun Li
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Huating Kong
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Kunhao Zhang
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Xingya Wang
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Weiwei Wang
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Qin Xu
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Qiangyan Pan
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Zhijun Wang
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
| | - Qisheng Wang
- The Division of Life Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 239 Zhengheng Road, Pudong, Shanghai 201204, People’s Republic of China
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Masuda T, Kobayashi M, Yatani K. synapse: interactive support on photoemission spectroscopy measurement and analysis for non-expert users. JOURNAL OF SYNCHROTRON RADIATION 2023; 30:1127-1134. [PMID: 37885154 PMCID: PMC10624023 DOI: 10.1107/s1600577523008305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 09/21/2023] [Indexed: 10/28/2023]
Abstract
Photoemission spectroscopy, an experimental method based on the photoelectric effect, is now an indispensable technique used in various fields such as materials science, life science, medicine and nanotechnology. However, part of the experimental process of photoemission spectroscopy relies on experience and intuition, which is obviously a problem for novice users. In particular, photoemission spectroscopy experiments using high-brilliance synchrotron radiation as a light source are not easy for novice users because measurements must be performed quickly and accurately as scheduled within a limited experimental period. In addition, research on the application of information science methods to quantum data measurement, such as photoemission spectroscopy, is mainly aimed at the development of analysis methods, and few attempts have been made to clarify the problems faced by users who lack experience. In this study, the problems faced by novice users of photoemission spectroscopy are identified, and a native application named synapse with functions to solve these problems is implemented and evaluated qualitatively and quantitatively. This paper describes the contents of an interview survey, the functional design and the implementation of the application synapse based on the interview survey, and results and discussion of the evaluation experiment.
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Affiliation(s)
- Takuma Masuda
- Department of Electrical Engineering and Information Systems, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Masaki Kobayashi
- Department of Electrical Engineering and Information Systems, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
- Center for Spintronics Research Network, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Koji Yatani
- Department of Electrical Engineering and Information Systems, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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Fontecilla-Camps JC, Bricogne G. Jean-Luc Ferrer (1964–2020): structural biologist, beamline instrumentation innovator and entrepreneur. Acta Crystallogr D Struct Biol 2020. [DOI: 10.1107/s2059798320007081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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