1
|
Porkolab V, Chabrol E, Varga N, Ordanini S, Sutkevičiu̅tė I, Thépaut M, García-Jiménez MJ, Girard E, Nieto PM, Bernardi A, Fieschi F. Rational-Differential Design of Highly Specific Glycomimetic Ligands: Targeting DC-SIGN and Excluding Langerin Recognition. ACS Chem Biol 2018; 13:600-608. [PMID: 29272097 DOI: 10.1021/acschembio.7b00958] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
At the surface of dendritic cells, C-type lectin receptors (CLRs) allow the recognition of carbohydrate-based PAMPS or DAMPS (pathogen- or danger-associated molecular patterns, respectively) and promote immune response regulation. However, some CLRs are hijacked by viral and bacterial pathogens. Thus, the design of ligands able to target specifically one CLR, to either modulate an immune response or to inhibit a given infection mechanism, has great potential value in therapeutic design. A case study is the selective blocking of DC-SIGN, involved notably in HIV trans-infection of T lymphocytes, without interfering with langerin-mediated HIV clearance. This is a challenging task due to their overlapping carbohydrate specificity. Toward the rational design of DC-SIGN selective ligands, we performed a comparative affinity study between DC-SIGN and langerin with natural ligands. We found that GlcNAc is recognized by both CLRs; however, selective sulfation are shown to increase the selectivity in favor of langerin. With the combination of site-directed mutagenesis and X-ray structural analysis of the langerin/GlcNS6S complex, we highlighted that 6-sulfation of the carbohydrate ligand induced langerin specificity. Additionally, the K313 residue from langerin was identified as a critical feature of its binding site. Using a rational and a differential approach in the study of CLR binding sites, we designed, synthesized, and characterized a new glycomimetic, which is highly specific for DC-SIGN vs langerin. STD NMR, SPR, and ITC characterizations show that compound 7 conserved the overall binding mode of the natural disaccharide while possessing an improved affinity and a strict specificity for DC-SIGN.
Collapse
Affiliation(s)
- Vanessa Porkolab
- Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, F-38044 Grenoble, France
| | - Eric Chabrol
- Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, F-38044 Grenoble, France
| | - Norbert Varga
- Università degli Studi di Milano (UniMI), Dip. Chimica, via Golgi 19, 20133, Milano, Italy
| | - Stefania Ordanini
- Università degli Studi di Milano (UniMI), Dip. Chimica, via Golgi 19, 20133, Milano, Italy
| | - Ieva Sutkevičiu̅tė
- Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, F-38044 Grenoble, France
| | - Michel Thépaut
- Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, F-38044 Grenoble, France
| | - Maria José García-Jiménez
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), Centro de Investigaciones Científicas Isla de La Cartuja, CSIC and Universidad de Sevilla, Américo Vespucio, 49, 41092 Sevilla, Spain
| | - Eric Girard
- Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, F-38044 Grenoble, France
| | - Pedro M. Nieto
- Glycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), Centro de Investigaciones Científicas Isla de La Cartuja, CSIC and Universidad de Sevilla, Américo Vespucio, 49, 41092 Sevilla, Spain
| | - Anna Bernardi
- Università degli Studi di Milano (UniMI), Dip. Chimica, via Golgi 19, 20133, Milano, Italy
| | - Franck Fieschi
- Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, F-38044 Grenoble, France
| |
Collapse
|
2
|
Chabrol E, Thépaut M, Dezutter-Dambuyant C, Vivès C, Marcoux J, Kahn R, Valladeau-Guilemond J, Vachette P, Durand D, Fieschi F. Alteration of the langerin oligomerization state affects Birbeck granule formation. Biophys J 2015; 108:666-77. [PMID: 25650933 DOI: 10.1016/j.bpj.2014.10.075] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Revised: 10/10/2014] [Accepted: 10/23/2014] [Indexed: 11/16/2022] Open
Abstract
Langerin, a trimeric C-type lectin specifically expressed in Langerhans cells, has been reported to be a pathogen receptor through the recognition of glycan motifs by its three carbohydrate recognition domains (CRD). In the context of HIV-1 (human immunodeficiency virus-1) transmission, Langerhans cells of genital mucosa play a protective role by internalizing virions in Birbeck Granules (BG) for elimination. Langerin (Lg) is directly involved in virion binding and BG formation through its CRDs. However, nothing is known regarding the mechanism of langerin assembly underlying BG formation. We investigated at the molecular level the impact of two CRD mutations, W264R and F241L, on langerin structure, function, and BG assembly using a combination of biochemical and biophysical approaches. Although the W264R mutation causes CRD global unfolding, the F241L mutation does not affect the overall structure and gp120 (surface HIV-1 glycoprotein of 120 kDa) binding capacities of isolated Lg-CRD. In contrast, this mutation induces major functional and structural alterations of the whole trimeric langerin extracellular domain (Lg-ECD). As demonstrated by small-angle x-ray scattering comparative analysis of wild-type and mutant forms, the F241L mutation perturbs the oligomerization state and the global architecture of Lg-ECD. Correlatively, despite conserved intrinsic lectin activity of the CRD, avidity property of Lg-ECD is affected as shown by a marked decrease of gp120 binding. Beyond the change of residue itself, the F241L mutation induces relocation of the K200 side chain also located within the interface between protomers of trimeric Lg-ECD, thereby explaining the defective oligomerization of mutant Lg. We conclude that not only functional CRDs but also their correct spatial presentation are critical for BG formation as well as gp120 binding.
Collapse
MESH Headings
- Animals
- Antigens, CD/chemistry
- Antigens, CD/metabolism
- Cell Line
- Chromatography, High Pressure Liquid
- Cross-Linking Reagents/pharmacology
- Crystallography, X-Ray
- Cytoplasmic Granules/metabolism
- Fibroblasts/metabolism
- Fibroblasts/ultrastructure
- HIV Envelope Protein gp120/metabolism
- Humans
- Lectins, C-Type/chemistry
- Lectins, C-Type/metabolism
- Mannans/metabolism
- Mannose-Binding Lectins/chemistry
- Mannose-Binding Lectins/metabolism
- Mice
- Models, Molecular
- Mutant Proteins/chemistry
- Mutant Proteins/metabolism
- Mutation/genetics
- Protein Binding/drug effects
- Protein Multimerization/drug effects
- Protein Structure, Tertiary
- Scattering, Small Angle
- Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
- Transfection
Collapse
Affiliation(s)
- Eric Chabrol
- University Grenoble Alpes, IBS, Grenoble, France; CNRS, UMR 5075, Grenoble France; CEA, UMR 5075, Grenoble France
| | - Michel Thépaut
- University Grenoble Alpes, IBS, Grenoble, France; CNRS, UMR 5075, Grenoble France; CEA, UMR 5075, Grenoble France
| | | | - Corinne Vivès
- University Grenoble Alpes, IBS, Grenoble, France; CNRS, UMR 5075, Grenoble France; CEA, UMR 5075, Grenoble France
| | - Julien Marcoux
- University Grenoble Alpes, IBS, Grenoble, France; CNRS, UMR 5075, Grenoble France; CEA, UMR 5075, Grenoble France
| | - Richard Kahn
- University Grenoble Alpes, IBS, Grenoble, France; CNRS, UMR 5075, Grenoble France; CEA, UMR 5075, Grenoble France
| | - Jenny Valladeau-Guilemond
- Centre Léon Bérard-UMR INSERM 1052-CNRS 5286, Centre de recherche en Cancérologie de Lyon, Lyon, France
| | - Patrice Vachette
- Institut de Biologie Intégrative de la Cellule, CEA, CNRS, Université Paris Sud, Gif sur Yvette, France
| | - Dominique Durand
- Institut de Biologie Intégrative de la Cellule, CEA, CNRS, Université Paris Sud, Gif sur Yvette, France.
| | - Franck Fieschi
- University Grenoble Alpes, IBS, Grenoble, France; CNRS, UMR 5075, Grenoble France; CEA, UMR 5075, Grenoble France; Institut Universitaire de France, Paris, France.
| |
Collapse
|
3
|
Thépaut M, Guzzi C, Sutkeviciute I, Sattin S, Ribeiro-Viana R, Varga N, Chabrol E, Rojo J, Bernardi A, Angulo J, Nieto PM, Fieschi F. Structure of a Glycomimetic Ligand in the Carbohydrate Recognition Domain of C-type Lectin DC-SIGN. Structural Requirements for Selectivity and Ligand Design. J Am Chem Soc 2013; 135:2518-29. [DOI: 10.1021/ja3053305] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michel Thépaut
- Institut de Biologie Structurale, Université Grenoble I, 41 rue Jules Horowitz,
Grenoble, F-38027, France
- CNRS, UMR 5075, Grenoble, F-38000, France
- CEA, DSV, Grenoble, F-38000, France
| | - Cinzia Guzzi
- Glycosystems
Laboratory, Instituto
de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Américo Vespucio 49,
41092 Sevilla, Spain
| | - Ieva Sutkeviciute
- Institut de Biologie Structurale, Université Grenoble I, 41 rue Jules Horowitz,
Grenoble, F-38027, France
- CNRS, UMR 5075, Grenoble, F-38000, France
- CEA, DSV, Grenoble, F-38000, France
| | - Sara Sattin
- Dipartimento di Chimica via
Golgi 19, Universita’ di Milano,
20133 Milano, Italy
| | - Renato Ribeiro-Viana
- Glycosystems
Laboratory, Instituto
de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Américo Vespucio 49,
41092 Sevilla, Spain
| | - Norbert Varga
- Dipartimento di Chimica via
Golgi 19, Universita’ di Milano,
20133 Milano, Italy
| | - Eric Chabrol
- Institut de Biologie Structurale, Université Grenoble I, 41 rue Jules Horowitz,
Grenoble, F-38027, France
- CNRS, UMR 5075, Grenoble, F-38000, France
- CEA, DSV, Grenoble, F-38000, France
| | - Javier Rojo
- Glycosystems
Laboratory, Instituto
de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Américo Vespucio 49,
41092 Sevilla, Spain
| | - Anna Bernardi
- Dipartimento di Chimica via
Golgi 19, Universita’ di Milano,
20133 Milano, Italy
| | - Jesus Angulo
- Glycosystems
Laboratory, Instituto
de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Américo Vespucio 49,
41092 Sevilla, Spain
| | - Pedro M. Nieto
- Glycosystems
Laboratory, Instituto
de Investigaciones Químicas (IIQ), CSIC − Universidad de Sevilla, Américo Vespucio 49,
41092 Sevilla, Spain
| | - Franck Fieschi
- Institut de Biologie Structurale, Université Grenoble I, 41 rue Jules Horowitz,
Grenoble, F-38027, France
- CNRS, UMR 5075, Grenoble, F-38000, France
- Institut Universitaire de France, 103 boulevard Saint-Michel 75005 Paris, France
| |
Collapse
|
4
|
Chabrol E, Nurisso A, Daina A, Vassal-Stermann E, Thepaut M, Girard E, Vivès RR, Fieschi F. Glycosaminoglycans are interactants of Langerin: comparison with gp120 highlights an unexpected calcium-independent binding mode. PLoS One 2012; 7:e50722. [PMID: 23226363 PMCID: PMC3511376 DOI: 10.1371/journal.pone.0050722] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2012] [Accepted: 10/24/2012] [Indexed: 12/29/2022] Open
Abstract
Langerin is a C-type lectin specifically expressed in Langerhans cells. As recently shown for HIV, Langerin is thought to capture pathogens and mediate their internalisation into Birbeck Granules for elimination. However, the precise functions of Langerin remain elusive, mostly because of the lack of information on its binding properties and physiological ligands. Based on recent reports that Langerin binds to sulfated sugars, we conducted here a comparative analysis of Langerin interaction with mannose-rich HIV glycoprotein gp120 and glycosaminoglycan (GAGs), a family of sulfated polysaccharides expressed at the surface of most mammalian cells. Our results first revealed that Langerin bound to these different glycans through very distinct mechanisms and led to the identification of a novel, GAG-specific binding mode within Langerin. In contrast to the canonical lectin domain, this new binding site showed no Ca(2+)-dependency, and could only be detected in entire, trimeric extracellular domains of Langerin. Interestingly binding to GAGs, did not simply rely on a net charge effect, but rather on more discrete saccharide features, such as 6-O-sulfation, or iduronic acid content. Using molecular modelling simulations, we proposed a model of Langerin/heparin complex, which located the GAG binding site at the interface of two of the three Carbohydrate-recognition domains of the protein, at the edge of the a-helix coiled-coil. To our knowledge, the binding properties that we have highlighted here for Langerin, have never been reported for C-type lectins before. These findings provide new insights towards the understanding of Langerin biological functions.
Collapse
Affiliation(s)
- Eric Chabrol
- Groupe Membrane & Pathogens, Institut de Biologie Structurale, Université Joseph Fourier, Grenoble, France
- UMR 5075, CNRS, Grenoble, France
- Departement des sciences du vivant, CEA, Grenoble, France
| | - Alessandra Nurisso
- Département de Pharmacochimie, Université de Genève, Genève, Switzerland
| | - Antoine Daina
- Département de Pharmacochimie, Université de Genève, Genève, Switzerland
- Molecular Modeling Group, Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Emilie Vassal-Stermann
- UMR 5075, CNRS, Grenoble, France
- Departement des sciences du vivant, CEA, Grenoble, France
- Groupe SAGAG, Institut de Biologie Structurale, Université Joseph Fourier, Grenoble, France
| | - Michel Thepaut
- Groupe Membrane & Pathogens, Institut de Biologie Structurale, Université Joseph Fourier, Grenoble, France
- UMR 5075, CNRS, Grenoble, France
- Departement des sciences du vivant, CEA, Grenoble, France
| | - Eric Girard
- UMR 5075, CNRS, Grenoble, France
- Departement des sciences du vivant, CEA, Grenoble, France
- Groupe ELMA, Institut de Biologie Structurale, Université Joseph Fourier, Grenoble, France
| | - Romain R. Vivès
- UMR 5075, CNRS, Grenoble, France
- Departement des sciences du vivant, CEA, Grenoble, France
- Molecular Modeling Group, Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Franck Fieschi
- Groupe Membrane & Pathogens, Institut de Biologie Structurale, Université Joseph Fourier, Grenoble, France
- UMR 5075, CNRS, Grenoble, France
- Departement des sciences du vivant, CEA, Grenoble, France
- Institut Universitaire de France, Paris, France
- * E-mail:
| |
Collapse
|
5
|
Thépaut M, Valladeau J, Nurisso A, Kahn R, Arnou B, Vivès C, Saeland S, Ebel C, Monnier C, Dezutter-Dambuyant C, Imberty A, Fieschi F. Structural studies of langerin and Birbeck granule: a macromolecular organization model. Biochemistry 2009; 48:2684-98. [PMID: 19175323 DOI: 10.1021/bi802151w] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Dendritic cells, a sentinel immunity cell lineage, include different cell subsets that express various C-type lectins. For example, epidermal Langerhans cells express langerin, and some dermal dendritic cells express DC-SIGN. Langerin is a crucial component of Birbeck granules, the Langerhans cell hallmark organelle, and may have a preventive role toward HIV, by its internalization into Birbeck granules. Since langerin carbohydrate recognition domain (CRD) is crucial for HIV interaction and Birbeck granule formation, we produced the CRD of human langerin and solved its structure at 1.5 A resolution. On this basis gp120 high-mannose oligosaccharide binding has been evaluated by molecular modeling. Hydrodynamic studies reveal a very elongated shape of recombinant langerin extracellular domain (ECD). A molecular model of the langerin ECD, integrating the CRD structure, has been generated and validated by comparison with hydrodynamic parameters. In parallel, Langerhans cells were isolated from human skin. From their analysis by electron microscopy and the langerin ECD model, an ultrastructural organization is proposed for Birbeck granules. To delineate the role of the different langerin domains in Birbeck granule formation, we generated truncated and mutated langerin constructs. After transfection into a fibroblastic cell line, we highlighted, in accordance with our model, the role of the CRD in the membrane zipping occurring in BG formation as well as some contribution of the cytoplasmic domain. Finally, we have shown that langerin ECD triggering with a specific mAb promotes global rearrangements of LC morphology. Our results open the way to the definition of a new membrane deformation mechanism.
Collapse
Affiliation(s)
- Michel Thépaut
- Laboratoire des Proteines Membranaires, CEA, DSV, Institut de Biologie Structurale (IBS), Grenoble, France
| | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
6
|
Tabarani G, Thépaut M, Stroebel D, Ebel C, Vivès C, Vachette P, Durand D, Fieschi F. DC-SIGN neck domain is a pH-sensor controlling oligomerization: SAXS and hydrodynamic studies of extracellular domain. J Biol Chem 2009; 284:21229-40. [PMID: 19502234 DOI: 10.1074/jbc.m109.021204] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
DC-SIGN is a C-type lectin receptor of dendritic cells and is involved in the early stages of numerous infectious diseases. DC-SIGN is organized into a tetramer enabling multivalent interaction with pathogens. Once formed, the DC-SIGN-pathogen complex can be internalized into compartments of increasing acidity. We have studied the pH dependence of the oligomerization state and conformation of the entire extracellular domain and neck region. We present evidence for equilibrium between the monomeric and tetrameric states of the extracellular domain, which exhibits a marked dependence with respect to both pH and ionic strength. Using solution x-ray scattering we have obtained a molecular envelope of the extracellular domain in which a model has been built. Our results highlight the central role of the neck domain in the pH-sensitive control of the oligomerization state, in the extended conformation of the protein, and in carbohydrate recognition domain organization and presentation. This work opens new insight into the molecular mechanism of ligand release and points to new avenues to block the first step of this important infection pathway.
Collapse
|