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Erba A, Desmarais JK, Casassa S, Civalleri B, Donà L, Bush IJ, Searle B, Maschio L, Edith-Daga L, Cossard A, Ribaldone C, Ascrizzi E, Marana NL, Flament JP, Kirtman B. CRYSTAL23: A Program for Computational Solid State Physics and Chemistry. J Chem Theory Comput 2023; 19:6891-6932. [PMID: 36502394 PMCID: PMC10601489 DOI: 10.1021/acs.jctc.2c00958] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Indexed: 12/14/2022]
Abstract
The Crystal program for quantum-mechanical simulations of materials has been bridging the realm of molecular quantum chemistry to the realm of solid state physics for many years, since its first public version released back in 1988. This peculiarity stems from the use of atom-centered basis functions within a linear combination of atomic orbitals (LCAO) approach and from the corresponding efficiency in the evaluation of the exact Fock exchange series. In particular, this has led to the implementation of a rich variety of hybrid density functional approximations since 1998. Nowadays, it is acknowledged by a broad community of solid state chemists and physicists that the inclusion of a fraction of Fock exchange in the exchange-correlation potential of the density functional theory is key to a better description of many properties of materials (electronic, magnetic, mechanical, spintronic, lattice-dynamical, etc.). Here, the main developments made to the program in the last five years (i.e., since the previous release, Crystal17) are presented and some of their most noteworthy applications reviewed.
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Affiliation(s)
- Alessandro Erba
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Jacques K. Desmarais
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Silvia Casassa
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Bartolomeo Civalleri
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Lorenzo Donà
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Ian J. Bush
- STFC
Rutherford Appleton Laboratory, Chilton Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - Barry Searle
- SFTC
Daresbury Laboratory, Daresbury, Cheshire WA4 4AD, United Kingdom
| | - Lorenzo Maschio
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Loredana Edith-Daga
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Alessandro Cossard
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Chiara Ribaldone
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Eleonora Ascrizzi
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Naiara L. Marana
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Jean-Pierre Flament
- Université
de Lille, CNRS, UMR 8523 — PhLAM — Physique des Lasers, Atomes et Molécules, 59000 Lille, France
| | - Bernard Kirtman
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
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Cossard A, Casassa S, Gatti C, Desmarais JK, Erba A. Topology of the Electron Density and of Its Laplacian from Periodic LCAO Calculations on f-Electron Materials: The Case of Cesium Uranyl Chloride. Molecules 2021; 26:4227. [PMID: 34299502 PMCID: PMC8303866 DOI: 10.3390/molecules26144227] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Revised: 07/06/2021] [Accepted: 07/08/2021] [Indexed: 11/28/2022] Open
Abstract
The chemistry of f-electrons in lanthanide and actinide materials is yet to be fully rationalized. Quantum-mechanical simulations can provide useful complementary insight to that obtained from experiments. The quantum theory of atoms in molecules and crystals (QTAIMAC), through thorough topological analysis of the electron density (often complemented by that of its Laplacian) constitutes a general and robust theoretical framework to analyze chemical bonding features from a computed wave function. Here, we present the extension of the Topond module (previously limited to work in terms of s-, p- and d-type basis functions only) of the Crystal program to f- and g-type basis functions within the linear combination of atomic orbitals (LCAO) approach. This allows for an effective QTAIMAC analysis of chemical bonding of lanthanide and actinide materials. The new implemented algorithms are applied to the analysis of the spatial distribution of the electron density and its Laplacian of the cesium uranyl chloride, Cs2UO2Cl4, crystal. Discrepancies between the present theoretical description of chemical bonding and that obtained from a previously reconstructed electron density by experimental X-ray diffraction are illustrated and discussed.
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Affiliation(s)
- Alessandro Cossard
- Dipartimento di Chimica, Università di Torino, Via Giuria 5, 10125 Torino, Italy; (A.C.); (S.C.)
| | - Silvia Casassa
- Dipartimento di Chimica, Università di Torino, Via Giuria 5, 10125 Torino, Italy; (A.C.); (S.C.)
| | - Carlo Gatti
- CNR-SCITEC, Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, Via C. Golgi 19, 20133 Milano, Italy;
| | - Jacques K. Desmarais
- Dipartimento di Chimica, Università di Torino, Via Giuria 5, 10125 Torino, Italy; (A.C.); (S.C.)
| | - Alessandro Erba
- Dipartimento di Chimica, Università di Torino, Via Giuria 5, 10125 Torino, Italy; (A.C.); (S.C.)
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Otte F, Kleinheider J, Hiller W, Wang R, Englert U, Strohmann C. Weak yet Decisive: Molecular Halogen Bond and Competing Weak Interactions of Iodobenzene and Quinuclidine. J Am Chem Soc 2021; 143:4133-4137. [PMID: 33687197 DOI: 10.1021/jacs.1c00239] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The halogen bonded adduct between the commonly used constituents quinuclidine and iodobenzene is based on a single weak nitrogen-iodine contact, and the isolation of this adduct was initially unexpected. Iodobenzene does not contain any electron-withdrawing group and therefore represents an unconventional halogen bond donor. Based on excellent diffraction data of high resolution, an electron density study was successfully accomplished and confirmed one of the longest N···I molecular halogen bonds with a distance of 2.9301(4) Å. The topological analysis identified the XB as a directional but weak σ hole interaction and revealed secondary contacts between peripheral regions of opposite charge. These additional contacts and their competition with a nitrogen-based interaction were confirmed by NOESY experiments in solution. Integration enabled us to determine the relative NOE ratios and provided insight regarding the existing interactions.
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Affiliation(s)
- Felix Otte
- TU Dortmund University, Inorganic Chemistry, Otto-Hahn-Str. 6, D-44227, Dortmund, Germany
| | - Johannes Kleinheider
- TU Dortmund University, Inorganic Chemistry, Otto-Hahn-Str. 6, D-44227, Dortmund, Germany
| | - Wolf Hiller
- TU Dortmund University, Inorganic Chemistry, Otto-Hahn-Str. 6, D-44227, Dortmund, Germany.,TU Dortmund University, Faculty of Chemistry and Chemical Biology, Otto-Hahn-Str. 6, D-44227, Dortmund, Germany
| | - Ruimin Wang
- RWTH Aachen University, Inorganic Chemistry, Landoltweg 1, D-52056, Aachen, Germany.,Shanxi University, Institute of Molecular Science, Wucheng Road 92, 030006, Taiyuan, P. R. China
| | - Ulli Englert
- RWTH Aachen University, Inorganic Chemistry, Landoltweg 1, D-52056, Aachen, Germany.,Shanxi University, Institute of Molecular Science, Wucheng Road 92, 030006, Taiyuan, P. R. China
| | - Carsten Strohmann
- TU Dortmund University, Inorganic Chemistry, Otto-Hahn-Str. 6, D-44227, Dortmund, Germany
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Pinkerton AA. Nothing trumps good data. Acta Crystallogr A Found Adv 2021; 77:83-84. [PMID: 33646193 DOI: 10.1107/s2053273321000759] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 01/21/2021] [Indexed: 11/10/2022] Open
Affiliation(s)
- A Alan Pinkerton
- Department of Chemistry and Biochemistry, University of Toledo, Toledo, OH 43606, USA
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Cossard A, Desmarais JK, Casassa S, Gatti C, Erba A. Charge Density Analysis of Actinide Compounds from the Quantum Theory of Atoms in Molecules and Crystals. J Phys Chem Lett 2021; 12:1862-1868. [PMID: 33577336 PMCID: PMC8028320 DOI: 10.1021/acs.jpclett.1c00100] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 02/10/2021] [Indexed: 05/17/2023]
Abstract
The nature of chemical bonding in actinide compounds (molecular complexes and materials) remains elusive in many respects. A thorough analysis of their electron charge distribution can prove decisive in elucidating bonding trends and oxidation states along the series. However, the accurate determination and robust analysis of the charge density of actinide compounds pose several challenges from both experimental and theoretical perspectives. Significant advances have recently been made on the experimental reconstruction and topological analysis of the charge density of actinide materials [Gianopoulos et al. IUCrJ, 2019, 6, 895]. Here, we discuss complementary advances on the theoretical side, which allow for the accurate determination of the charge density of actinide materials from quantum-mechanical simulations in the bulk. In particular, the extension of the Topond software implementing Bader's quantum theory of atoms in molecules and crystals (QTAIMAC) to f- and g-type basis functions is introduced, which allows for an effective study of lanthanides and actinides in the bulk and in vacuo, on the same grounds. Chemical bonding of the tetraphenyl phosphate uranium hexafluoride cocrystal [PPh4+][UF6-] is investigated, whose experimental charge density is available for comparison. Crystal packing effects on the charge density and chemical bonding are quantified and discussed. The methodology presented here allows reproducing all subtle features of the topology of the Laplacian of the experimental charge density. Such a remarkable qualitative and quantitative agreement represents a strong mutual validation of both approaches-experimental and computational-for charge density analysis of actinide compounds.
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Affiliation(s)
- Alessandro Cossard
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Jacques K. Desmarais
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Silvia Casassa
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Carlo Gatti
- CNR-SCITEC,
Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, via C. Golgi 19, 20133 Milano, Italy
| | - Alessandro Erba
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
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