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Gurbanov AV, Firoozbakht F, Pourshirband N, Sharafi-Badr P, Hayati P, Souri B, Eshghi F, Kaminsky W, Mahmoudi G, Verpoort F, Mehrabadi Z. A new 1D Mn(II) coordination polymer: Synthesis, crystal structure, hirshfeld surface analysis and molecular docking studies. Heliyon 2024; 10:e29565. [PMID: 38699722 PMCID: PMC11063412 DOI: 10.1016/j.heliyon.2024.e29565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 04/10/2024] [Accepted: 04/10/2024] [Indexed: 05/05/2024] Open
Abstract
The synthesis of novel metal-organic coordination polymers (MOCP) with the chemical formula [Mn2L (SCN)2(OH)2]3·CH3OH [L = 1,5-bis(pyridine-4-ylmethylene) carbonohydrazide] {1} was accomplished using two different techniques: solvothermal and sonochemical ultrasonic-assisted. An investigation was carried out to examine the impact of various factors such as reaction time, sonication power, temperature, and reactant concentration on the morphology and size of the crystals. Interestingly, it was found that sonication power and temperature did not affect the crystals' morphology and size. To further analyze the prepared microcrystals of MOCPs, SEM was utilized to examine their surface morphology, and XRD, elemental evaluation composition. The identification of the functional groups present in the prepared Mn-MOCPs was accomplished through the utilization of FT-IR spectroscopy. Subsequently, the calcination of 1 in an air atmosphere at 650 °C led to the formation of Mn3O4 nanoparticles. The geometric and electronic structure of the MOCPs was evaluated using density functional theory (DFT). The utilization of molecular docking methodologies demonstrated that the best cavity of the human androgen receptor possessed an interaction energy of -116.3 kJ mol-1. This energy encompassed a combination of both bonding and non-bonding interactions. The Results showed that steric interaction and electrostatic potential are the main interactions in AR polymer and Mn(II). These interactions in the defined cavity indicated that this polymer could be an effective anti-prostate candidate, because AR is involved in the growth of prostate cancer cells, and these interactions indicated the inhibition of prostate cancer cell growth.
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Affiliation(s)
- Atash V. Gurbanov
- Centro de Química Estrutural, Institute of Molecular Sciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- Excellence Center, Baku State University, Z. Khalilov Str. 23, AZ 1148 Baku, Azerbaijan
- Western Caspian University, Istiqlaliyyat Street 31, AZ 1001, Baku, Azerbaijan
| | - Fateme Firoozbakht
- Department of Chemistry, University of Isfahan, Isfahan 81746-73441, Iran
| | - Nafiseh Pourshirband
- Department of Chemistry, Shahreza Branch, Islamic Azad University, P.O. Box 311-86145, Shahreza, Isfahan, Iran
| | - Paria Sharafi-Badr
- Department of Pharmacognosy and Pharmaceutical Biotechnology, School of Pharmacy, Iran University of Medical Sciences, Tehran, Iran
| | - Payam Hayati
- Organic and Nano Group (ONG), Department of Chemistry, Iran University of Science and Technology (IUST), PO Box 16846-13114, Tehran, Iran
| | - Bagher Souri
- Department of Chemistry, Faculty of Sciences, University of Sistan and Baluchestan, Zahedan, Iran
| | - Fazlolah Eshghi
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz, Iran
| | - Werner Kaminsky
- X-ray Crystallography Laboratory, University of Washington, United States
| | - Ghodrat Mahmoudi
- Department of Chemistry, Faculty of Science, University of Maragheh, P.O. Box 55136-83111, Maragheh, Iran
- Chemistry Department, Faculty of Engineering and Natural Sciences, Istinye University, Sarıyer, Istanbul 34396, Turkey
| | - Francis Verpoort
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, Wuhan 430070, China
| | - Zohreh Mehrabadi
- Department of Chemistry, Firoozabad Branch, Islamic Azad University, Firoozabad, Iran
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Viau L, Knorr M, Knauer L, Brieger L, Strohman C. 2,2’-Ethylenebis(1,3-dithiane) as polydentate m2-, m4- and m5-assembling ligand for the construction of sulphur-rich Cu(I), Hg(II) and heterometallic Cu(I)/Hg(II) coordination polymers featuring uncommon network architectures. Dalton Trans 2022; 51:7581-7606. [DOI: 10.1039/d2dt00800a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
With the aim to elaborate novel and inexpensive sulphur-rich materials featuring unusual network architectures, the coordination chemistry of the tetradentate thiaheterocycle 1,2-di(1,3-dithian-2-yl)ethane L1 ligand toward CuX and HgX2 salts was...
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Knorr M, Viau L, Rousselin Y, Kubicki MM. Crystal structure of the two-dimensional coordination polymer poly[di-μ-bromido-bis-(μ-tetra-hydro-thiophene)-dicopper(I)]. Acta Crystallogr E Crystallogr Commun 2021; 77:744-748. [PMID: 34513023 PMCID: PMC8382061 DOI: 10.1107/s2056989021006460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 06/21/2021] [Indexed: 11/30/2022]
Abstract
The polymeric title compound, [Cu2Br2(C4H8S)2] n , CP1, represents an example of a two-dimensional coordination polymer resulting from reaction of CuBr with tetra-hydro-thio-phene (THT) in MeCN solution. The two-dimensional layers consist of two different types of rhomboid-shaped dinuclear Cu(μ2-Br)2Cu secondary building units (SBUs); one with a quite loose Cu⋯Cu separation of 3.3348 (10) Å and a second one with a much closer inter-metallic contact of 2.9044 (9) Å. These SBUs are inter-connected through bridging THT ligands, in which the S atom acts as a four-electron donor bridging each Cu(μ2-Br)2Cu unit in a μ2-bonding mode. In the crystal, the layers are linked by very weak C-H⋯·Br hydrogen bonds with H⋯Br distances of 2.95 Å, thus giving rise to a three-dimensional supra-molecular network.
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Affiliation(s)
- Michael Knorr
- Institut UTINAM UMR CNRS 6213, Université Bourgogne Franche-Comté, 16 route de Gray, 25030 Besançon, France
| | - Lydie Viau
- Institut UTINAM UMR CNRS 6213, Université Bourgogne Franche-Comté, 16 route de Gray, 25030 Besançon, France
| | - Yoann Rousselin
- ICMUB UMR CNRS 6302, Université Bourgogne Franche-Comté, 9 avenue Alain Savary, 21078 Dijon, France
| | - Marek M. Kubicki
- ICMUB UMR CNRS 6302, Université Bourgogne Franche-Comté, 9 avenue Alain Savary, 21078 Dijon, France
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Raghuvanshi A, Krupp A, Viau L, Knorr M, Strohmann C. Crystal structures of 9-[bis-(benzyl-sulfan-yl)meth-yl]anthracene and of cyclo-dodeca-kis-(μ 2-phenyl-methane-thiol-ato-κ 2 S: S)hexa-palladium(6 Pd- Pd)-anthracene-9,10-dione (1/1). Acta Crystallogr E Crystallogr Commun 2021; 77:718-725. [PMID: 34513018 PMCID: PMC8382052 DOI: 10.1107/s2056989021006113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 06/11/2021] [Indexed: 11/17/2022]
Abstract
The first title compound, C29H24S2, L1, represents an example of an anthracene-based functionalized di-thio-ether, which may be useful as a potential chelating or terminal ligand for coordination chemistry. This di-thio-acetal L1 crystallizes in the monoclinic space group P21/c. The phenyl rings of the benzyl groups and that of the anthracene unit form dihedral angles of 49.21 (4) and 58.79 (5)° and the crystal structure displays short C-H⋯π contacts. Surprisingly, when attempting to coordinate L1 to [PdCl2(PhCN)2], instead of the targeted chelate complex [PdCl2(κ2-L1)], a cleavage reaction leads to the formation of the centrosymmetric hexa-nuclear cyclic cluster of composition [Pd6(μ2-SCH2Ph)12] Pd6, or [Pd6(C7H7S)12]·C14H8O2. This tiara-shaped hexa-mer crystallizing in the triclinic space group P consists of six approximately square planar Pd(II)S4 centers, which are inter-connected through twelve μ2-bridging benzyl thiol-ate groups. The Pd⋯Pd contacts range from 3.0892 (2) to 3.1609 (2) Å and can be considered as weakly bonding. The unit cell of Pd6 contains also a co-crystallized anthracene-9,10-dione mol-ecule.
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Affiliation(s)
- Abhinav Raghuvanshi
- Institut UTINAM UMR 6213 CNRS, Université Bourgogne Franche-Comté, 16, Route de Gray, 25030 Besançon, France
| | - Anna Krupp
- Anorganische Chemie, TU Dortmund University, Otto-Hahn-Str. 6, D-44227 Dortmund, Germany
| | - Lydie Viau
- Institut UTINAM UMR 6213 CNRS, Université Bourgogne Franche-Comté, 16, Route de Gray, 25030 Besançon, France
| | - Michael Knorr
- Institut UTINAM UMR 6213 CNRS, Université Bourgogne Franche-Comté, 16, Route de Gray, 25030 Besançon, France
| | - Carsten Strohmann
- Anorganische Chemie, TU Dortmund University, Otto-Hahn-Str. 6, D-44227 Dortmund, Germany
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Raghuvanshi A, Knauer L, Viau L, Knorr M, Strohmann C. Crystal structure of 2-[bis(benzylsulfanyl)methyl]-6-methoxyphenol. Acta Crystallogr E Crystallogr Commun 2020; 76:484-487. [PMID: 32280489 PMCID: PMC7133036 DOI: 10.1107/s2056989020002091] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 02/14/2020] [Indexed: 11/25/2022]
Abstract
The title compound, C22H22O2S2, 1, represents an example of an ortho-vanillin-based functionalized di-thio-ether, which could be useful as a potential chelating ligand or bridging ligand for coordination chemistry. This di-thio-acetal 1 crystallizes in the ortho-rhom-bic space group Pbca. The phenyl rings of the benzyl groups and that of the vanillin unit form dihedral angles of 35.38 (6) and 79.77 (6)°, respectively. The crystal structure, recorded at 100 K, displays both weak intra-molecular O-H⋯O and inter-molecular O-H⋯S hydrogen bonding.
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Affiliation(s)
- Abhinav Raghuvanshi
- Institut UTINAM UMR 6213 CNRS, Université Bourgogne Franche-Comté, 16, Route de Gray, 25030 Besançon Cedex, France
| | - Lena Knauer
- Anorganische Chemie, TU Dortmund University, Otto-Hahn-Str. 6/6a, D-44227 Dortmund, Germany
| | - Lydie Viau
- Institut UTINAM UMR 6213 CNRS, Université Bourgogne Franche-Comté, 16, Route de Gray, 25030 Besançon Cedex, France
| | - Michael Knorr
- Institut UTINAM UMR 6213 CNRS, Université Bourgogne Franche-Comté, 16, Route de Gray, 25030 Besançon Cedex, France
| | - Carsten Strohmann
- Anorganische Chemie, TU Dortmund University, Otto-Hahn-Str. 6/6a, D-44227 Dortmund, Germany
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