A Review of EEG and MEG Epileptic Spike Detection Algorithms

A spike is a spike: On the universality of spike features in four epilepsy models

OBJECTIVE

Frequency properties of the EEG characteristics of different seizure types including absence seizures have been described for various rodent models of epilepsy. However, little attention has been paid to the frequency properties of individual spike-wave complexes (SWCs), the constituting elements characterizing the different generalized seizure types. Knowledge of their properties is not only important for understanding the mechanisms underlying seizure generation but also for the identification of epileptiform activity in various seizure types. Here, we compared the frequency properties of SWCs in different epilepsy models.

METHODS

A software package was designed and used for the extraction and frequency analysis of SWCs from long-term EEG of four spontaneously seizing, chronic epilepsy models: a post-status epilepticus model of temporal lobe epilepsy, a lateral fluid percussion injury model of post-traumatic epilepsy, and two genetic models of absence epilepsy-GAERS and rats of the WAG/Rij strain. The SWCs within the generalized seizures were separated into fast (three-phasic spike) and slow (mostly containing the wave) components. Eight animals from each model were used (32 recordings, 104 510 SWCs in total). A limitation of our study is that the recordings were hardware-filtered (high-pass), which could affect the frequency composition of the EEG.

RESULTS

We found that the three-phasic spike component was similar in all animal models both in time and frequency domains, their amplitude spectra showed a single expressed peak at 18-20 Hz. The slow component showed a much larger variability across the rat models.

SIGNIFICANCE

Despite differences in the morphology of the epileptiform activity in different models, the frequency composition of the spike component of single SWCs is identical and does not depend on the particular epilepsy model. This fact may be used for the development of universal algorithms for seizure detection applicable to different rat models of epilepsy.

PLAIN LANGUAGE SUMMARY

There is a large variety between people with epilepsy regarding the clinical manifestations and the electroencephalographic (EEG) phenomena accompanying the epileptic seizures. Here, we show that one of the EEG signs of epilepsy, an epileptic spike, is universal, since it has the same shape and frequency characteristics in different animal models of generalized epilepsies, despite differences in recording sites and location.

Virtual brain twins: from basic neuroscience to clinical use

Virtual brain twins are personalized, generative and adaptive brain models based on data from an individual's brain for scientific and clinical use. After a description of the key elements of virtual brain twins, we present the standard model for personalized whole-brain network models. The personalization is accomplished using a subject's brain imaging data by three means: (1) assemble cortical and subcortical areas in the subject-specific brain space; (2) directly map connectivity into the brain models, which can be generalized to other parameters; and (3) estimate relevant parameters through model inversion, typically using probabilistic machine learning. We present the use of personalized whole-brain network models in healthy ageing and five clinical diseases: epilepsy, Alzheimer's disease, multiple sclerosis, Parkinson's disease and psychiatric disorders. Specifically, we introduce spatial masks for relevant parameters and demonstrate their use based on the physiological and pathophysiological hypotheses. Finally, we pinpoint the key challenges and future directions.

Epileptic EEG patterns recognition through machine learning techniques and relevant time-frequency features

OBJECTIVES

The present study is designed to explore the process of epileptic patterns' automatic detection, specifically, epileptic spikes and high-frequency oscillations (HFOs), via a selection of machine learning (ML) techniques. The primary motivation for conducting such a research lies mainly in the need to investigate the long-term electroencephalography (EEG) recordings' visual examination process, often considered as a time-consuming and potentially error-prone procedure, requiring a great deal of mental focus and highly experimented neurologists. On attempting to resolve such a challenge, a number of state-of-the-art ML algorithms have been evaluated and compare in terms of performance, to pinpoint the most effective algorithm fit for accurately extracting epileptic EEG patterns.

CONTENT

Based on intracranial as well as simulated EEG data, the attained findings turn out to reveal that the randomforest (RF) method proved to be the most consistently effective approach, significantly outperforming the entirety of examined methods in terms of EEG recordings epileptic-pattern identification. Indeed, the RF classifier appeared to record an average balanced classification rate (BCR) of 92.38 % in regard to spikes recognition process, and 78.77 % in terms of HFOs detection.

SUMMARY

Compared to other approaches, our results provide valuable insights into the RF classifier's effectiveness as a powerful ML technique, fit for detecting EEG signals born epileptic bursts.

OUTLOOK

As a potential future work, we envisage to further validate and sustain our major reached findings through incorporating a larger EEG dataset. We also aim to explore the generative adversarial networks (GANs) application so as to generate synthetic EEG signals or combine signal generation techniques with deep learning approaches. Through this new vein of thought, we actually preconize to enhance and boost the automated detection methods' performance even more, thereby, noticeably enhancing the epileptic EEG pattern recognition area.

A Two-Stage Automatic System for Detection of Interictal Epileptiform Discharges from Scalp Electroencephalograms

The objective of this work was to develop a deep learning-based automatic system with reliable performance in detecting interictal epileptiform discharges (IEDs) from scalp electroencephalograms (EEGs). For the present study, 484 raw scalp EEG recordings were included, standardized, and split into 406 for training and 78 for testing. Two neurophysiologists individually annotated the recordings for training in channel-wise manner. Annotations were divided into segments, on which nine deep neural networks (DNNs) were trained for the multiclassification of IED, artifact, and background. The fitted IED detectors were then evaluated on 78 EEG recordings with IED events fully annotated by three experts independently (majority agreement). A two montage-based decision mechanism (TMDM) was designed to determine whether an IED event occurred at a single time instant. Area under the precision-recall curve (AUPRC), as well as false-positive rates, F1 scores, and kappa agreement scores for sensitivity = 0.8 were estimated. In multitype classification, five DNNs provided one-versus-rest AUPRC mean value >0.993 using fivefold cross-validation. In IED detection, the system that had integrated the temporal convolutional network (TCN)-based IED detector and the TMDM rule achieved an AUPRC of 0.811. The false positive was 0.194/min (11.64/h), and the F1 score was 0.745. The agreement score between the system and the experts was 0.905. The proposed framework provides a TCN-based IED detector and a novel two montage-based determining mechanism that combined to make an automatic IED detection system. The system would be useful in aiding clinic EEG interpretation.

Graph neural networks in EEG spike detection

OBJECTIVE

This study develops new machine learning architectures that are more adept at detecting interictal epileptiform discharges (IEDs) in scalp EEG. A comparison of results using the average precision (AP) metric is made with the proposed models on two datasets obtained from Baptist Hospital of Miami and Temple University Hospital.

METHODS

Applying graph neural networks (GNNs) on functional connectivity (FC) maps of different frequency sub-bands to yield a novel architecture we call FC-GNN. Attention mechanism is applied on a complete graph to let the neural network select its important edges, hence bypassing the extraction of features, a model we refer to as CA-GNN.

RESULTS

On the Baptist Hospital dataset, the results were as follows: Vanilla Self-Attention →0.9029±0.0431, Hierarchical Attention →0.8546±0.0587, Vanilla Visual Geometry Group (VGG) →0.92±0.0618, Satelight →0.9219±0.046, FC-GNN →0.9731±0.0187, and CA-GNN →0.9788±0.0125. In the same order, the results on the Temple University Hospital dataset are 0.9692, 0.9113, 0.97, 0.9575, 0.963, and 0.9879.

CONCLUSION

Based on the good results they yield, GNNs prove to have a strong potential in detecting epileptogenic activity.

SIGNIFICANCE

This study opens the door for the discovery of the powerful role played by GNNs in capturing IEDs, which is an essential step for identifying the epileptogenic networks of the affected brain and hence improving the prospects for more accurate 3D source localization.

An artificial intelligence-based pipeline for automated detection and localisation of epileptic sources from magnetoencephalography

Objective.Magnetoencephalography (MEG) is a powerful non-invasive diagnostic modality for presurgical epilepsy evaluation. However, the clinical utility of MEG mapping for localising epileptic foci is limited by its low efficiency, high labour requirements, and considerable interoperator variability. To address these obstacles, we proposed a novel artificial intelligence-based automated magnetic source imaging (AMSI) pipeline for automated detection and localisation of epileptic sources from MEG data.Approach.To expedite the analysis of clinical MEG data from patients with epilepsy and reduce human bias, we developed an autolabelling method, a deep-learning model based on convolutional neural networks and a hierarchical clustering method based on a perceptual hash algorithm, to enable the coregistration of MEG and magnetic resonance imaging, the detection and clustering of epileptic activity, and the localisation of epileptic sources in a highly automated manner. We tested the capability of the AMSI pipeline by assessing MEG data from 48 epilepsy patients.Main results.The AMSI pipeline was able to rapidly detect interictal epileptiform discharges with 93.31% ± 3.87% precision based on a 35-patient dataset (with sevenfold patientwise cross-validation) and robustly rendered accurate localisation of epileptic activity with a lobar concordance of 87.18% against interictal and ictal stereo-electroencephalography findings in a 13-patient dataset. We also showed that the AMSI pipeline accomplishes the necessary processes and delivers objective results within a much shorter time frame (∼12 min) than traditional manual processes (∼4 h).Significance.The AMSI pipeline promises to facilitate increased utilisation of MEG data in the clinical analysis of patients with epilepsy.

Automatic detection method of epileptic seizures based on IRCMDE and PSO-SVM

Multi-scale dispersion entropy (MDE) has been widely used to extract nonlinear features of electroencephalography (EEG) signals and realize automatic detection of epileptic seizures. However, information loss and poor robustness will exist when MDE is used to measure the nonlinear complexity of the time sequence. To solve the above problems, an automatic detection method for epilepsy was proposed, based on improved refined composite multi-scale dispersion entropy (IRCMDE) and particle swarm algorithm optimization support vector machine (PSO-SVM). First, the refined composite multi-scale dispersion entropy (RCMDE) is introduced, and then the segmented average calculation of coarse-grained sequence is replaced by local maximum calculation to solve the problem of information loss. Finally, the entropy value is normalized to improve the robustness of characteristic parameters, and IRCMDE is formed. The simulated results show that when examining the complexity of the simulated signal, IRCMDE can eliminate the issue of information loss compared with MDE and RCMDE and weaken the entropy change caused by different parameter selections. In addition, IRCMDE is used as the feature parameter of the epileptic EEG signal, and PSO-SVM is used to identify the feature parameters. Compared with MDE-PSO-SVM, and RCMDE-PSO-SVM methods, IRCMDE-PSO-SVM can obtain more accurate recognition results.

Epileptic seizure focus detection from interictal electroencephalogram: a survey

Electroencephalogram (EEG) is one of most effective clinical diagnosis modalities for the localization of epileptic focus. Most current AI solutions use this modality to analyze the EEG signals in an automated manner to identify the epileptic seizure focus. To develop AI system for identifying the epileptic focus, there are many recently-published AI solutions based on biomarkers or statistic features that utilize interictal EEGs. In this review, we survey these solutions and find that they can be divided into three main categories: (i) those that use of biomarkers in EEG signals, including high-frequency oscillation, phase-amplitude coupling, and interictal epileptiform discharges, (ii) others that utilize feature-extraction methods, and (iii) solutions based upon neural networks (an end-to-end approach). We provide a detailed description of seizure focus with clinical diagnosis methods, a summary of the public datasets that seek to reduce the research gap in epilepsy, recent novel performance evaluation criteria used to evaluate the AI systems, and guidelines on when and how to use them. This review also suggests a number of future research challenges that must be overcome in order to design more efficient computer-aided solutions to epilepsy focus detection.

Automated Interictal Epileptiform Discharge Detection from Scalp EEG Using Scalable Time-series Classification Approaches

Deep learning for automated interictal epileptiform discharge (IED) detection has been topical with many published papers in recent years. All existing works viewed EEG signals as time-series and developed specific models for IED classification; however, general time-series classification (TSC) methods were not considered. Moreover, none of these methods were evaluated on any public datasets, making direct comparisons challenging. This paper explored two state-of-the-art convolutional-based TSC algorithms, InceptionTime and Minirocket, on IED detection. We fine-tuned and cross-evaluated them on a public (Temple University Events - TUEV) and two private datasets and provided ready metrics for benchmarking future work. We observed that the optimal parameters correlated with the clinical duration of an IED and achieved the best area under precision-recall curve (AUPRC) of 0.98 and F1 of 0.80 on the private datasets, respectively. The AUPRC and F1 on the TUEV dataset were 0.99 and 0.97, respectively. While algorithms trained on the private sets maintained their performance when tested on the TUEV data, those trained on TUEV could not generalize well to the private data. These results emerge from differences in the class distributions across datasets and indicate a need for public datasets with a better diversity of IED waveforms, background activities and artifacts to facilitate standardization and benchmarking of algorithms.

Seizure Detection: A Low Computational Effective Approach without Classification Methods

Epilepsy is a severe neurological disorder that is usually diagnosed by using an electroencephalogram (EEG). However, EEG signals are complex, nonlinear, and dynamic, thus generating large amounts of data polluted by many artefacts, lowering the signal-to-noise ratio, and hampering expert interpretation. The traditional seizure-detection method of professional review of long-term EEG signals is an expensive, time-consuming, and challenging task. To reduce the complexity and cost of the task, researchers have developed several seizure-detection approaches, primarily focusing on classification systems and spectral feature extraction. While these methods can achieve high/optimal performances, the system may require retraining and following up with the feature extraction for each new patient, thus making it impractical for real-world applications. Herein, we present a straightforward manual/automated detection system based on the simple seizure feature amplification analysis to minimize these practical difficulties. Our algorithm (a simplified version is available as additional material), borrowing from the telecommunication discipline, treats the seizure as the carrier of information and tunes filters to this specific bandwidth, yielding a viable, computationally inexpensive solution. Manual tests gave 93% sensitivity and 96% specificity at a false detection rate of 0.04/h. Automated analyses showed 88% and 97% sensitivity and specificity, respectively. Moreover, our proposed method can accurately detect seizure locations within the brain. In summary, the proposed method has excellent potential, does not require training on new patient data, and can aid in the localization of seizure focus/origin.

Data-driven approach for the delineation of the irritative zone in epilepsy in MEG

The reliable identification of the irritative zone (IZ) is a prerequisite for the correct clinical evaluation of medically refractory patients affected by epilepsy. Given the complexity of MEG data, visual analysis of epileptiform neurophysiological activity is highly time consuming and might leave clinically relevant information undetected. We recorded and analyzed the interictal activity from seven patients affected by epilepsy (Vectorview Neuromag), who successfully underwent epilepsy surgery (Engel > = II). We visually marked and localized characteristic epileptiform activity (VIS). We implemented a two-stage pipeline for the detection of interictal spikes and the delineation of the IZ. First, we detected candidate events from peaky ICA components, and then clustered events around spatio-temporal patterns identified by convolutional sparse coding. We used the average of clustered events to create IZ maps computed at the amplitude peak (PEAK), and at the 50% of the peak ascending slope (SLOPE). We validated our approach by computing the distance of the estimated IZ (VIS, SLOPE and PEAK) from the border of the surgically resected area (RA). We identified 25 spatiotemporal patterns mimicking the underlying interictal activity (3.6 clusters/patient). Each cluster was populated on average by 22.1 [15.0–31.0] spikes. The predicted IZ maps had an average distance from the resection margin of 8.4 ± 9.3 mm for visual analysis, 12.0 ± 16.5 mm for SLOPE and 22.7 ±. 16.4 mm for PEAK. The consideration of the source spread at the ascending slope provided an IZ closer to RA and resembled the analysis of an expert observer. We validated here the performance of a data-driven approach for the automated detection of interictal spikes and delineation of the IZ. This computational framework provides the basis for reproducible and bias-free analysis of MEG recordings in epilepsy.

Signal processing and computational modeling for interpretation of SEEG-recorded interictal epileptiform discharges in epileptogenic and non-epileptogenic zones

OBJECTIVE

In partial epilepsies, interictal epileptiform discharges (IEDs) are paroxysmal events observed in epileptogenic and non-epileptogenic zones. IEDs' generation and recurrence are subject to different hypotheses: they appear through glutamatergic and GABAergic processes; they may trigger seizures or prevent seizure propagation. This paper focuses on a specific class of IEDs, spike-waves (SWs), characterized by a short-duration spike followed by a longer duration wave, both of the same polarity. Signal analysis and neurophysiological mathematical models are used to interpret puzzling IED generation.

APPROACH

Interictal activity was recorded by intracranial stereo-electroencephalography (SEEG) electrodes in five different patients. SEEG experts identified the epileptic and non-epileptic zones in which IEDs were detected. After quantifying spatial and temporal features of the detected IEDs, the most significant features for classifying epileptic and non-epileptic zones were determined. A neurophysiologically-plausible mathematical model was then introduced to simulate the IEDs and understand the underlying differences observed in epileptic and non-epileptic zone IEDs.

MAIN RESULTS

Two classes of SWs were identified according to subtle differences in morphology and timing of the spike and wave component. Results showed that type-1 SWs were generated in epileptogenic regions also involved at seizure onset, while type-2 SWs were produced in the propagation or non-involved areas. The modeling study indicated that synaptic kinetics, cortical organization, and network interactions determined the morphology of the simulated SEEG signals. Modeling results suggested that the IED morphologies were linked to the degree of preserved inhibition.

SIGNIFICANCE

This work contributes to the understanding of different mechanisms generating IEDs in epileptic networks. The combination of signal analysis and computational models provides an efficient framework for exploring IEDs in partial epilepsies and classifying epileptogenic and non-epileptogenic zones.

Moving the field forward: detection of epileptiform abnormalities on scalp electroencephalography using deep learning—clinical application perspectives

The application of deep learning approaches for the detection of interictal epileptiform discharges is a nascent field, with most studies published in the past 5 years. Although many recent models have been published demonstrating promising results, deficiencies in descriptions of data sets, unstandardized methods, variation in performance evaluation and lack of demonstrable generalizability have made it difficult for these algorithms to be compared and progress to clinical validity. A few recent publications have provided a detailed breakdown of data sets and relevant performance metrics to exemplify the potential of deep learning in epileptiform discharge detection. This review provides an overview of the field and equips computer and data scientists with a synopsis of EEG data sets, background and epileptiform variation, model evaluation parameters and an awareness of the performance metrics of high impact and interest to the trained clinical and neuroscientist EEG end user. The gold standard and inter-rater disagreements in defining epileptiform abnormalities remain a challenge in the field, and a hierarchical proposal for epileptiform discharge labelling options is recommended. Standardized descriptions of data sets and reporting metrics are a priority. Source code-sharing and accessibility to public EEG data sets will increase the rigour, quality and progress in the field and allow validation and real-world clinical translation.

A Hybrid Expert System for Individualized Quantification of Electrical Status Epilepticus During Sleep Using Biogeography-Based Optimization

Electrical status epilepticus during sleep (ESES) is an epileptic encephalopathy in children with complex clinical manifestations. It is accompanied by specific electroencephalography (EEG) patterns of continuous spike and slow-waves. Quantifying such EEG patterns is critical to the diagnosis of ESES. While most of the existing automatic ESES quantification systems ignore the morphological variations of the signal as well as the individual variability among subjects. To address these issues, this paper presents a hybrid expert system that dedicates to mimicking the decision-making process of clinicians in ESES quantification by taking the morphological variations, individual variability, and medical knowledge into consideration. The proposed hybrid system not only offers a general scheme that could propel a semi-auto morphology analysis-based expert decision model to a fully automated ESES quantification with biogeography-based optimization (BBO), but also proposes a more precise individualized quantification system to involve the personalized characteristics by adopting an individualized parameters-selection framework. The feasibility and reliability of the proposed method are evaluated on a clinical dataset collected from twenty subjects at Children's Hospital of Fudan University, Shanghai, China. The estimation error for the individualized quantitative descriptor ESES is 0-4.32% and the average estimation error is 0.95% for all subjects. Experimental results show the presented system outperforms existing works and the individualized system significantly improves the performance of ESES quantification. The favorable results indicate that the proposed hybrid expert system for automatic ESES quantification is promising to support the diagnosis of ESES.

A Brief Introduction to Magnetoencephalography (MEG) and Its Clinical Applications

Magnetoencephalography (MEG) plays a pivotal role in the diagnosis of brain disorders. In this review, we have investigated potential MEG applications for analysing brain disorders. The signal-to-noise ratio (SNRMEG = 2.2 db, SNREEG < 1 db) and spatial resolution (SRMEG = 2−3 mm, SREEG = 7−10 mm) is higher for MEG than EEG, thus MEG potentially facilitates accurate monitoring of cortical activity. We found that the direct electrophysiological MEG signals reflected the physiological status of neurological disorders and play a vital role in disease diagnosis. Single-channel connectivity, as well as brain network analysis, using MEG data acquired during resting state and a given task has been used for the diagnosis of neurological disorders such as epilepsy, Alzheimer’s, Parkinsonism, autism, and schizophrenia. The workflow of MEG and its potential applications in the diagnosis of disease and therapeutic planning are also discussed. We forecast that computer-aided algorithms will play a prominent role in the diagnosis and prediction of neurological diseases in the future. The outcome of this narrative review will aid researchers to utilise MEG in diagnostics.

EEG Peak Detection in Cognitive Conflict Processing Using Summit Navigator and Clustering-based Ranking

Correct detection of peaks in electroencephalogram (EEG) signals is of essence due to the significant correlation of those potentials with cognitive performance and disorders. This paper proposes a novel and non-parametric approach to detect prediction error negativity (PEN) in cognitive conflict processing. The PEN candidates are first located from the input signal via an adaptation of a recent effective method for local maxima extraction, processed in a multi-scale manner. The found candidates are then fused and ranked based on their shape and location-based features. False positives caused by candidates' magnitude are eliminated by rotating the sorted candidate list where the one with the second-best ranking score will be identified as PEN. The EEG data collected from a 3D object selection task have been used to verify the efficacy of the proposed approach. Compared with the state-of-the-art peak detection techniques, the proposed method shows an improvement of at least 2.67% in accuracy and 6.27% in sensitivity while requires only about 4 ms to process an epoch. The accuracy and computational efficiency of the proposed technique in the detection of PEN in cognitive conflict processing would lead to promising applications in performance improvement of brain-computer interfaces (BCIs).

IENet: a robust convolutional neural network for EEG based brain-computer interfaces

OBJECTIVE

Brain-computer interfaces (BCIs) based on electroencephalogram (EEG) develop into novel application areas with more complex scenarios, which put forward higher requirements for the robustness of EEG signal processing algorithms. Deep learning can automatically extract discriminative features and potential dependencies via deep structures, demonstrating strong analytical capabilities in numerous domains such as computer vision (CV) and natural language processing (NLP). Making full use of deep learning technology to design a robust algorithm that is capable of analyzing EEG across BCI paradigms is our main work in this paper.

APPROACH

Inspired by InceptionV4 and InceptionTime architecture, we introduce a neural network ensemble named InceptionEEG-Net (IENet), where multi-scale convolutional layer and convolution of length 1 enable model to extract rich high-dimensional features with limited parameters. In addition, we propose the average receptive field gain for convolutional neural networks (CNNs), which optimizes IENet to detect long patterns at a smaller cost. We compare with the current state-of-the-art method across five EEG-BCI paradigms: steady-state visual evoked potentials, epilepsy EEG, overt attention P300 visual-evoked potentials, covert attention P300 visual-evoked potentials and movement-related cortical potentials.

MAIN RESULTS

The classification results show that the generalizability of IENet is on par with the state-of-the-art paradigm-agnostic models on test datasets. Furthermore, the feature explainability analysis of IENet illustrates its capability to extract neurophysiologically interpretable features for different BCI paradigms, ensuring the reliability of algorithm. Significance. It can be seen from our results that IENet can generalize to different BCI paradigms. And it is essential for deep CNNs to increase the receptive field size using average receptive field gain.

Fast parametric curve matching (FPCM) for automatic spike detection

Epilepsy is a widely spread neurological disease, whose treatment often requires resection of the pathological cortical tissue. Interictal spike analysis observed in the non-invasively collected EEG or MEG data offers a way to localize epileptogenic cortical structures for surgery planning purposes. While a plethora of automatic spike detection techniques have been developed each with its own assumptions and limitations, non of them is ideal and the best results are achieved when the output of several automatic spike detectors are combined. This is especially true in the low signal-to-noise ratio conditions. To this end we propose a novel biomimetic approach for automatic spike detection based on a constrained mixed spline machinery that we dub as fast parametric curve matching (FPCM). Using the peak-wave shape parametrization, the constrained parametric morphological model is constructed and convolved with the observed multichannel data to very efficiently determine mixed spline parameters corresponding to each time-point in the dataset. Then the logical predicates that directly map to the expected interictal event morphology allow us to accomplish the spike detection task. The results of simulations mimicking typical low SNR scenario show the robustness and high ROC AUC values of the FPCM method as compared to the spike detection performed by the means of more conventional approaches such as wavelet decomposition, template matching or simple amplitude thresholding. Applied to the real MEG and EEG data from the human patients and to ECoG data from the rat, the FPCM technique demonstrates reliable detection of the interictal events and localization of epileptogenic zones concordant with independent conclusions made by the epileptologist. Since the FPCM is computationally light, tolerant to high amplitude artifacts and flexible to accommodate verbalized descriptions of the arbitrary target morphology, it may complement the existing arsenal of means for analysis of noisy interictal datasets.

Abnormal phase-amplitude coupling characterizes the interictal state in epilepsy

OBJECTIVE

 Diagnosing epilepsy still requires visual interpretation of electroencephalography and magnetoencephalography (MEG) by specialists, which prevents quantification and standardization of diagnosis. Previous studies proposed automated diagnosis by combining various features from electroencephalography and MEG, such as relative power (Power) and functional connectivity. However, the usefulness of interictal phase-amplitude coupling (PAC) in diagnosing epilepsy is still unknown. We hypothesized that resting-state PAC would be different for patients with epilepsy in the interictal state and for healthy participants such that it would improve discrimination between the groups.

METHODS

 We obtained resting-state MEG and magnetic resonance imaging in 90 patients with epilepsy during their preoperative evaluation and in 90 healthy participants. We used the cortical currents estimated from MEG and magnetic resonance imaging to calculate Power in the δ (1-3 Hz), θ (4-7 Hz), α (8-13 Hz), β (13-30 Hz), low γ (35-55 Hz), and high γ (65-90 Hz) bands and functional connectivity in the θ band. PAC was evaluated using the synchronization index (SI) for eight frequency band pairs: the phases of δ, θ, α, and β and the amplitudes of low and high γ. First, we compared the mean SI values for the patients with epilepsy and the healthy participants. Then, using features such as PAC, Power, functional connectivity, and features extracted by deep learning individually or combined, we tested whether PAC improves discrimination accuracy for the two groups.

RESULTS

 The mean SI values were significantly different for the patients with epilepsy and the healthy participants. The SI value difference was highest for θ/low γ in the temporal lobe. Discrimination accuracy was the highest, at 90%, using the combination of PAC and deep learning.

SIGNIFICANCE

 Abnormal PAC characterized the patients with epilepsy in the interictal state compared with the healthy participants, potentially improving the discrimination of epilepsy.

A Low Power 1024-Channels Spike Detector Using Latch-Based RAM for Real-Time Brain Silicon Interfaces

High-density microelectrode arrays allow the neuroscientist to study a wider neurons population, however, this causes an increase of communication bandwidth. Given the limited resources available for an implantable silicon interface, an on-fly data reduction is mandatory to stay within the power/area constraints. This can be accomplished by implementing a spike detector aiming at sending only the useful information about spikes. We show that the novel non-linear energy operator called ASO in combination with a simple but robust noise estimate, achieves a good trade-off between performance and consumption. The features of the investigated technique make it a good candidate for implantable BMIs. Our proposal is tested both on synthetic and real datasets providing a good sensibility at low SNR. We also provide a 1024-channels VLSI implementation using a Random-Access Memory composed by latches to reduce as much as possible the power consumptions. The final architecture occupies an area of 2.3 mm2, dissipating 3.6 µW per channels. The comparison with the state of art shows that our proposal finds a place among other methods presented in literature, certifying its suitability for BMIs.

Automatic Detection of Epileptiform EEG Discharges based on the Semi-Classical Signal Analysis (SCSA) method

In this paper we utilize a signal processing tool, which can help physicians and clinical researchers to automate the process of EEG epileptiform spike detection. The semi-classical signal analysis method (SCSA) is a data-driven signal decomposition method developed for pulse-shaped signal characterization. We present an algorithm framework to process and extract features from the patient's EEG recording by deriving the mathematical motivation behind SCSA and quantifying existing spike diagnosis criterion with it. The proposed method can help reduce the amount of data to manually analyse. We have tested our proposed algorithm framework with real data, which guarantees the method's statistical reliability and robustness.

Epileptic Spike Detection Using Neural Networks with Linear-Phase Convolutions

To cope with the lack of highly skilled professionals, machine learning with proper signal processing is key for establishing automated diagnostic-aid technologies with which to conduct epileptic electroencephalogram (EEG) testing. In particular, frequency filtering with the appropriate passbands is essential for enhancing the biomarkerssuch as epileptic spike wavesthat are noted in the EEG. This paper introduces a novel class of neural networks (NNs) that have a bank of linear-phase finite impulse response filters at the first layer as a preprocessor that can behave as bandpass filters that extract biomarkers without destroying waveforms because of a linear-phase condition. Besides, the parameters of the filters are also data-driven. The proposed NNs were trained with a large amount of clinical EEG data, including 15,833 epileptic spike waveforms recorded from 50 patients, and their labels were annotated by specialists. In the experiments, we compared three scenarios for the first layer: no preprocessing, discrete wavelet transform, and the proposed data-driven filters. The experimental results show that the trained data-driven filter bank with supervised learning behaves like multiple bandpass filters. In particular, the trained filter passed a frequency band of approximately 1030 Hz. Moreover, the proposed method detected epileptic spikes, with the area under the receiver operating characteristic curve of 0.967 in the mean of 50 intersubject validations.

Computer-assisted EEG diagnostic review for idiopathic generalized epilepsy

Epilepsy diagnosis can be costly, time-consuming, and not uncommonly inaccurate. The reference standard diagnostic monitoring is continuous video-electroencephalography (EEG) monitoring, ideally capturing all events or concordant interictal discharges. Automating EEG data review would save time and resources, thus enabling more people to receive reference standard monitoring and also potentially heralding a more quantitative approach to therapeutic outcomes. There is substantial research into the automated detection of seizures and epileptic activity from EEG. However, automated detection software is not widely used in the clinic, and despite numerous published algorithms, few methods have regulatory approval for detecting epileptic activity from EEG. This study reports on a deep learning algorithm for computer-assisted EEG review. Deep convolutional neural networks were trained to detect epileptic discharges using a preexisting dataset of over 6000 labelled events in a cohort of 103 patients with idiopathic generalized epilepsy (IGE). Patients underwent 24-hour ambulatory outpatient EEG, and all data were curated and confirmed independently by two epilepsy specialists (Seneviratne et al., 2016). The resulting automated detection algorithm was then used to review diagnostic scalp EEG for seven patients (four with IGE and three with events mimicking seizures) to validate performance in a clinical setting. The automated detection algorithm showed state-of-the-art performance for detecting epileptic activity from clinical EEG, with mean sensitivity of >95% and corresponding mean false positive rate of 1 detection per minute. Importantly, diagnostic case studies showed that the automated detection algorithm reduced human review time by 80%-99%, without compromising event detection or diagnostic accuracy. The presented results demonstrate that computer-assisted review can increase the speed and accuracy of EEG assessment and has the potential to greatly improve therapeutic outcomes. This article is part of the Special Issue "NEWroscience 2018".

A deep learning framework with multi-perspective fusion for interictal epileptiform discharges detection in scalp electroencephalogram

Objective.Interictal epileptiform discharges (IEDs) are an important and widely accepted biomarker used in the diagnosis of epilepsy based on scalp electroencephalography (EEG). Because the visual detection of IEDs has various limitations, including high time consumption and high subjectivity, a faster, more robust, and automated IED detector is strongly in demand.Approach.Based on deep learning, we proposed an end-to-end framework with multi-scale morphologic features in the time domain and correlation in sensor space to recognize IEDs from raw scalp EEG.Main Results.Based on a balanced dataset of 30 patients with epilepsy, the results of the five-fold (leave-6-patients-out) cross-validation shows that our model achieved state-of-the-art detection performance (accuracy: 0.951, precision: 0.973, sensitivity: 0.938, specificity: 0.968, F1 score: 0.954, AUC: 0.973). Furthermore, our model maintained excellent IED detection rates in an independent test on three datasets.Significance.The proposed model could be used to assist neurologists in clinical EEG interpretation of patients with epilepsy. Additionally, this approach combines multi-level output and correlation among EEG sensors and provides new ideas for epileptic biomarker detection in scalp EEG.

Deep learning for robust detection of interictal epileptiform discharges

OBJECTIVE

Automatic detection of interictal epileptiform discharges (IEDs, short as ``spikes'') from an epileptic brain can help predict seizure recurrence and support the diagnosis of epilepsy. Developing fast, reliable and robust detection methods for IEDs based on scalp or intracortical EEG may facilitate online seizure monitoring and closed-loop neurostimulation.

APPROACH

We developed a new deep learning approach, which employs a long short-term memory (LSTM) network architecture (``IEDnet'') and an auxiliary classifier generative adversarial network (AC-GAN), to train on both expert-annotated and augmented spike events from intracranial electroencephalography (iEEG) recordings of epilepsy patients. We validated our IEDnet with two real-world iEEG datasets, and compared IEDnet with the support vector machine (SVM) and random forest (RF) classifiers on their detection performances.

MAIN RESULTS

IEDnet achieved excellent cross-validated detection performances in terms of both sensitivity and specificity, and outperformed SVM and RF. Synthetic spike samples augmented by AC-GAN further improved the detection performance. In addition, the performance of IEDnet was robust with respect to the sampling frequency and noise. Furthermore, we also demonstrated the cross-institutional generalization ability of IEDnet while testing between two datasets.

SIGNIFICANCE

IEDnet achieves excellent detection performances in identifying interictal spikes. AC-GAN can produce augmented iEEG samples to improve supervised deep learning.

Converging Robotic Technologies in Targeted Neural Rehabilitation: A Review of Emerging Solutions and Challenges

Recent advances in the field of neural rehabilitation, facilitated through technological innovation and improved neurophysiological knowledge of impaired motor control, have opened up new research directions. Such advances increase the relevance of existing interventions, as well as allow novel methodologies and technological synergies. New approaches attempt to partially overcome long-term disability caused by spinal cord injury, using either invasive bridging technologies or noninvasive human-machine interfaces. Muscular dystrophies benefit from electromyography and novel sensors that shed light on underlying neuromotor mechanisms in people with Duchenne. Novel wearable robotics devices are being tailored to specific patient populations, such as traumatic brain injury, stroke, and amputated individuals. In addition, developments in robot-assisted rehabilitation may enhance motor learning and generate movement repetitions by decoding the brain activity of patients during therapy. This is further facilitated by artificial intelligence algorithms coupled with faster electronics. The practical impact of integrating such technologies with neural rehabilitation treatment can be substantial. They can potentially empower nontechnically trained individuals-namely, family members and professional carers-to alter the programming of neural rehabilitation robotic setups, to actively get involved and intervene promptly at the point of care. This narrative review considers existing and emerging neural rehabilitation technologies through the perspective of replacing or restoring functions, enhancing, or improving natural neural output, as well as promoting or recruiting dormant neuroplasticity. Upon conclusion, we discuss the future directions for neural rehabilitation research, diagnosis, and treatment based on the discussed technologies and their major roadblocks. This future may eventually become possible through technological evolution and convergence of mutually beneficial technologies to create hybrid solutions.

Automatic detection of generalized paroxysmal fast activity in interictal EEG using time-frequency analysis

OBJECTIVE

Markup of generalized interictal epileptiform discharges (IEDs) on EEG is an important step in the diagnosis and characterization of epilepsy. However, manual EEG markup is a time-consuming, subjective, and the specialized task where the human reviewer needs to visually inspect a large amount of data to facilitate accurate clinical decisions. In this study, we aimed to develop a framework for automated detection of generalized paroxysmal fast activity (GPFA), a generalized IED seen in scalp EEG recordings of patients with the severe epilepsy of Lennox-Gastaut syndrome (LGS).

METHODS

We studied 13 children with LGS who had GPFA events in their interictal EEG recordings. Time-frequency information derived from manually marked IEDs across multiple EEG channels was used to automatically detect similar events in each patient's interictal EEG. We validated true positives and false positives of the proposed spike detection approach using both standalone scalp EEG and simultaneous EEG-functional MRI (EEG-fMRI) recordings.

RESULTS

GPFA events displayed a consistent low-high frequency arrangement in the time-frequency domain. This 'bimodal' spectral feature was most prominent over frontal EEG channels. Our automatic detection approach using this feature identified EEG events with similar time-frequency properties to the manually marked GPFAs. Brain maps of EEG-fMRI signal change during these automatically detected IEDs were comparable to the EEG-fMRI brain maps derived from manual IED markup.

CONCLUSION

GPFA events have a characteristic bimodal time-frequency feature that can be automatically detected from scalp EEG recordings in patients with LGS. The validity of this time-frequency feature is demonstrated by EEG-fMRI analysis of automatically detected events, which recapitulates the brain maps we have previously shown to underlie generalized IEDs in LGS.

SIGNIFICANCE

This study provides a novel methodology that enables a fast, automated, and objective inspection of generalized IEDs in LGS. The proposed framework may be extendable to a wider range of epilepsy syndromes in which monitoring the burden of epileptic activity can aid clinical decision-making and faster assessment of treatment response and estimation of future seizure risk.

Comparison of Sneo-Based Neural Spike Detection Algorithms for Implantable Multi-Transistor Array Biosensors

Real-time neural spike detection is an important step in understanding neurological activities and developing brain-silicon interfaces. Recent approaches exploit minimally invasive sensing techniques based on implanted complementary metal-oxide semiconductors (CMOS) multi transistors arrays (MTAs) that limit the damage of the neural tissue and provide high spatial resolution. Unfortunately, MTAs result in low signal-to-noise ratios due to the weak capacitive coupling between the nearby neurons and the sensor and the high noise power coming from the analog front-end. In this paper we investigate the performance achievable by using spike detection algorithms for MTAs, based on some variants of the smoothed non-linear energy operator (SNEO). We show that detection performance benefits from the correlation of the signals detected by the MTA pixels, but degrades when a high firing rate of neurons occurs. We present and compare different approaches and noise estimation techniques for the SNEO, aimed at increasing the detection accuracy at low SNR and making it less dependent on neurons firing rates. The algorithms are tested by using synthetic neural signals obtained with a modified version of NEUROCUBE generator. The proposed approaches outperform the SNEO, showing a more than 20% increase on averaged sensitivity at 0 dB and reduced dependence on the neuronal firing rate.

EMS-Net: A Deep Learning Method for Autodetecting Epileptic Magnetoencephalography Spikes

Epilepsy is a neurological disorder characterized by sudden and unpredictable epileptic seizures, which incurs significant negative impacts on patients' physical, psychological and social health. A practical approach to assist with the clinical assessment and treatment planning for patients is to process magnetoencephalography (MEG) data to identify epileptogenic zones. As a widely accepted biomarker of epileptic foci, epileptic MEG spikes need to be precisely detected. Given that the visual inspection of spikes is time consuming, an automatic and efficient system with adequate accuracy for spike detection is valuable in clinical practice. However, current approaches for MEG spike autodetection are dependent on hand-engineered features. Here, we propose a novel multiview Epileptic MEG Spikes detection algorithm based on a deep learning Network (EMS-Net) to accurately and efficiently recognize the spike events from MEG raw data. The results of the leave-k-subject-out validation tests for multiple datasets (i.e., balanced and realistic datasets) showed that EMS-Net achieved state-of-the-art classification performance (i.e., accuracy: 91.82% - 99.89%; precision: 91.90% - 99.45%; sensitivity: 91.61% - 99.53%; specificity: 91.60% - 99.96%; f1 score: 91.70% - 99.48%; and area under the curve: 0.9688 - 0.9998).

QuPWM: Feature Extraction Method for Epileptic Spike Classification

Epilepsy is a neurological disorder ranked as the second most serious neurological disease known to humanity, after stroke. Inter-ictal spiking is an abnormal neuronal discharge after an epileptic seizure. This abnormal activity can originate from one or more cranial lobes, often travels from one lobe to another, and interferes with normal activity from the affected lobe. The common practice for Inter-ictal spike detection of brain signals is via visual scanning of the recordings, which is a subjective and a very time-consuming task. Motivated by that, this article focuses on using machine learning for epileptic spikes classification in magnetoencephalography (MEG) signals. First, we used the Position Weight Matrix (PWM) method combined with a uniform quantizer to generate useful features from time domain and frequency domain through a Fast Fourier Transform (FFT) of the framed raw MEG signals. Second, the extracted features are fed to standard classifiers for inter-ictel spikes classification. The proposed technique shows great potential in spike classification and reducing the feature vector size. Specifically, the proposed technique achieved average sensitivity up to 87% and specificity up to 97% using 5-folds cross-validation applied to a balanced dataset. These samples are extracted from nine epileptic subjects using a sliding frame of size 95 samples-points with a step-size of 8 sample-points.

Feature Generation and Dimensionality Reduction using the Discrete Spectrum of the Schrödinger Operator for Epileptic Spikes Detection

Epilepsy is a neurological disorder classified as the second most serious neurological disease known to humanity, after stroke. Magnetoencephalography (MEG) is performed to localize the epileptogenic zone in the brain. However, the detection of epileptic spikes requires the visual assessment of long MEG recordings. This task is time-consuming and might lead to wrong decisions. Therefore, the introduction of effective machine learning algorithms for the quick and accurate epileptic spikes detection from MEG recordings would improve the clinical diagnosis of the disease. The efficiency of machine learning based algorithms requires a good characterization of the signal by extracting pertinent features. In this paper, we propose new sets of features for MEG signals. These features are based on a Semi-Classical Signal Analysis (SCSA) method, which allows a good characterization of peak shaped signals. Moreover, this method improves the spike detection accuracy and reduces the feature vector size. We could achieve up to 93.68% and 95.08% in average sensitivity and specificity, respectively. We used the 5-folds cross-validation applied to a balanced dataset of 3104 frames, extracted from eight healthy and eight epileptic subjects with a frame size of 100 samples with a step size of 2 samples, using Random Forest (RF) classifier.