Segmentation of atherosclerotic carotid plaque in ultrasound video

Quality measures for fully automatic CT histogram-based fat estimation on a corpse sample

In a previous article a new algorithm for fully automatic 'CT histogram based Fat Estimation and quasi-Segmentation' (CFES) was validated on synthetic data, on a special CT phantom, and tested on one corpse. Usage of said data in FE-modelling for temperature-based death time estimation is the investigation's number one long-term goal. The article presents CFES's results on a human corpse sample of size R = 32, evaluating three different performance measures: the τ-value, measuring the ability to differentiate fat from muscle, the anatomical fat-muscle misclassification rate D, and the weighted distance S between the empirical and the theoretical grey-scale value histogram. CFES-performance on the sample was: D = 3.6% for weight exponent α = 1, slightly higher for α ≥ 2 and much higher for α ≤ 0. Investigating τ, S and D on the sample revealed some unexpected results: While large values of τ imply small D-values, rising S implies falling D and there is a positive linear relationship between τ and S. The latter two findings seem to be counter-intuitive. Our Monte Carlo analysis detected a general umbrella type relation between τ and S, which seems to stem from a pivotal problem in fitting Normal mixture distributions.

HRU-Net: A Transfer Learning Method for Carotid Artery Plaque Segmentation in Ultrasound Images

Carotid artery stenotic plaque segmentation in ultrasound images is a crucial means for the analysis of plaque components and vulnerability. However, segmentation of severe stenotic plaques remains a challenging task because of the heterogeneities of inter-plaques and intra-plaques, and obscure boundaries of plaques. In this paper, we propose an automated HRU-Net transfer learning method for segmenting carotid plaques, using the limited images. The HRU-Net is based on the U-Net encoder−decoder paradigm, and cross-domain knowledge is transferred for plaque segmentation by fine-tuning the pretrained ResNet-50. Moreover, a cropped-blood-vessel image augmentation is customized for the plaque position constraint during training only. Moreover, hybrid atrous convolutions (HACs) are designed to derive diverse long-range dependences for refined plaque segmentation that are used on high-level semantic layers to exploit the implicit discrimination features. The experiments are performed on 115 images; Firstly, the 10-fold cross-validation, using 40 images with severe stenosis plaques, shows that the proposed method outperforms some of the state-of-the-art CNN-based methods on Dice, IoU, Acc, and modified Hausdorff distance (MHD) metrics; the improvements on metrics of Dice and MHD are statistically significant (p < 0.05). Furthermore, our HRU-Net transfer learning method shows fine generalization performance on 75 new images with varying degrees of plaque stenosis, and it may be used as an alternative for automatic noisy plaque segmentation in carotid ultrasound images clinically.

An integrated system for the segmentation of atherosclerotic carotid plaque ultrasound video

The robust border identification of atherosclerotic carotid plaque, the corresponding degree of stenosis of the common carotid artery (CCA), and also the characteristics of the arterial wall, including plaque size, composition, and elasticity, have significant clinical relevance for the assessment of future cardiovascular events. To facilitate the follow-up and analysis of the carotid stenosis in serial clinical investigations, we propose and evaluate an integrated system for the segmentation of atherosclerotic carotid plaque in ultrasound videos of the CCA based on video frame normalization, speckle reduction filtering, M-mode state-based identification, parametric active contours, and snake segmentation. Initially, the cardiac cycle in each video is identified and the video M-mode is generated, thus identifying systolic and diastolic states. The video is then segmented for a time period of at least one full cardiac cycle. The algorithm is initialized in the first video frame of the cardiac cycle, with human assistance if needed, and the moving atherosclerotic plaque borders are tracked and segmented in the subsequent frames. Two different initialization methods are investigated in which initial contours are estimated every 20 video frames. In the first initialization method, the initial snake contour is estimated using morphology operators; in the second initialization method, the Chan-Vese active contour model is used. The performance of the algorithm is evaluated on 43 real CCA digitized videos from B-mode longitudinal ultrasound segments and is compared with the manual segmentations of an expert, available every 20 frames in a time span of 3 to 5 s, covering, in general, 2 cardiac cycles. The segmentation results were very satisfactory, according to the expert objective evaluation, for the two different methods investigated, with true-negative fractions (TNF-specificity) of 83.7 ± 7.6% and 84.3 ± 7.5%; true-positive fractions (TPF-sensitivity) of 85.42 ± 8.1% and 86.1 ± 8.0%; and between the ground truth and the proposed segmentation method, kappa indices (KI) of 84.6% and 85.3% and overlap indices of 74.7% and 75.4%. The segmentation contours were also used to compute the cardiac state identification and radial, longitudinal, and shear strain indices for the CCA wall and plaque between the asymptomatic and symptomatic groups were investigated. The results of this study show that the integrated system investigated in this study can be successfully used for the automated video segmentation of the CCA plaque in ultrasound videos.

Despeckle Filtering Toolbox for Medical Ultrasound Video

Ultrasound medical video has the potential in differentiating between normal and abnormal tissue and structure. Ultrasound imaging is used in border identification and texture characterisation of the atherosclerotic carotid plaque in the common carotid artery (CCA), the identification and measurement of the intima-media thickness (IMT) and the lumen diameter that are very important in the assessment of cardiovascular disease. However, visual perception is reduced by speckle noise affecting the quality of ultrasound B-mode imaging. Noise reduction is therefore essential for increasing the visual quality or as a pre-processing step for further automated analysis, such as the video segmentation of the IMT and the atherosclerotic carotid plaque in ultrasound video sequences. In order to facilitate this analysis, the authors have developed a video analysis software toolbox based on MATLAB® that uses video despeckling, texture analysis and image quality evaluation techniques to automate the pre-processing and complement the disease evaluation in ultrasound CCA videos. The proposed software, which is based on a graphical user interface (GUI), incorporates video normalisation, 4 different despeckle filtering techniques (DsFlsmv, DsFhmedian, DsFkuwahara and DsFsrad), 65 texture features, 11 quantitative video quality metrics and objective video quality evaluation. The software was validated on 10 ultrasound videos of the CCA, by comparing its results with quantitative visual analysis performed by two medical experts. It was shown that the filters DsFlsmv, and DsFhmedian improved video quality perception (based on the expert’s assessment and the video quality metrics). It is anticipated that the system could help the physician in the assessment of cardiovascular video analysis. However, exhaustive evaluation of the despeckle filtering toolbox has to be carried out by more experts on more videos.