Automatic segmentation of the left ventricle into 17 anatomical regions in cardiac MR imaging

Automatic pipeline for segmentation of LV myocardium on quantitative MR T1 maps using deep learning model and computation of radial T1 and ECV values

Native T1 mapping is a non-invasive technique used for early detection of diffused myocardial abnormalities, and it provides baseline tissue characterization. Post-contrast T1 mapping enhances tissue differentiation, enables extracellular volume (ECV) calculation, and improves myocardial viability assessment. Accurate and precise segmenting of the left ventricular (LV) myocardium on T1 maps is crucial for assessing myocardial tissue characteristics and diagnosing cardiovascular diseases (CVD). This study presents a deep learning (DL)-based pipeline for automatically segmenting LV myocardium on T1 maps and automatic computation of radial T1 and ECV values. The study employs a multicentric dataset consisting of retrospective multiparametric MRI data of 332 subjects to develop and assess the performance of the proposed method. The study compared DL architectures U-Net and Deep Res U-Net for LV myocardium segmentation, which achieved a dice similarity coefficient of 0.84 ± 0.43 and 0.85 ± 0.03, respectively. The dice similarity coefficients computed for radial sub-segmentation of the LV myocardium on basal, mid-cavity, and apical slices were 0.77 ± 0.21, 0.81 ± 0.17, and 0.61 ± 0.14, respectively. The t-test performed between ground truth vs. predicted values of native T1, post-contrast T1, and ECV showed no statistically significant difference (p > 0.05) for any of the radial sub-segments. The proposed DL method leverages the use of quantitative T1 maps for automatic LV myocardium segmentation and accurately computing radial T1 and ECV values, highlighting its potential for assisting radiologists in objective cardiac assessment and, hence, in CVD diagnostics.

A deep learning-based fully automatic and clinical-ready framework for regional myocardial segmentation and myocardial ischemia evaluation

Myocardial ischemia diagnosis with CT perfusion imaging (CTP) is important in coronary artery disease management. Traditional analysis procedure is time-consuming and error-prone due to the semi-manual and operator-dependent nature. To improve the diagnostic performance, a deep learning-based, fully automatic, and clinical-ready framework was developed. Two collaborating deep learning networks including a 3D U-Net for left ventricle segmentation and a CNN for anatomical landmarks detection were trained on 276 subjects. With our processing framework, the 17-segment left ventricular model was automatically generated conformed to the clinical standard. Myocardial blood flow computed by commercial software was extracted within each segment and visualized against the bull's eye plot. The performance was validated on another 45 subjects. Coronary angiography and invasive fractional flow reserve measurements were also performed in these patients to serve as the gold standard for myocardial ischemia diagnosis. As a result, the diagnostic accuracy for our method was 81.08%, much higher than that for commercially available CTP analysis software (56.75%), and our method demonstrated a higher consistency (Kappa coefficient 0.759 vs. 0.585). Besides, the average processing time of our method was much lower (30 ± 10.5 s/subject vs. over 30 min/subject). In conclusion, the proposed deep learning-based framework could be a promising tool for assisting CTP analysis.