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Mixed Machine Learning Approach for Efficient Prediction of Human Heart Disease by Identifying the Numerical and Categorical Features. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12157449] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Heart disease is a danger to people’s health because of its prevalence and high mortality risk. Predicting cardiac disease early using a few simple physical indications collected from a routine physical examination has become difficult. Clinically, it is critical and sensitive for the signs of heart disease for accurate forecasts and concrete steps for future diagnosis. The manual analysis and prediction of a massive volume of data are challenging and time-consuming. In this paper, a unique heart disease prediction model is proposed to predict heart disease correctly and rapidly using a variety of bodily signs. A heart disease prediction algorithm based on the analysis of the predictive models’ classification performance on combined datasets and the train-test split technique is presented. Finally, the proposed technique’s training results are compared with the previous works. For the Cleveland, Switzerland, Hungarian, and Long Beach VA heart disease datasets, accuracy, precision, recall, F1-score, and ROC-AUC curves are used as the performance indicators. The analytical outcomes for Random Forest Classifiers (RFC) of the combined heart disease datasets are F1-score 100%, accuracy 100%, precision 100%, recall 100%, and the ROC-AUC 100%. The Decision Tree Classifiers for pooled heart disease datasets are F1-score 100%, accuracy 98.80%, precision 98%, recall 99%, ROC-AUC 99%, and for RFC and Gradient Boosting Classifiers (GBC), the ROC-AUC gives 100% performance. The performances of the machine learning algorithms are improved by using five-fold cross validation. Again, the Stacking CV Classifier is also used to improve the performances of the individual machine learning algorithms by combining two and three techniques together. In this paper, several reduction methods are incorporated. It is found that the accuracy of the RFC classification algorithm is high. Moreover, the developed method is efficient and reliable for predicting heart disease.
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Javeed A, Khan SU, Ali L, Ali S, Imrana Y, Rahman A. Machine Learning-Based Automated Diagnostic Systems Developed for Heart Failure Prediction Using Different Types of Data Modalities: A Systematic Review and Future Directions. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:9288452. [PMID: 35154361 PMCID: PMC8831075 DOI: 10.1155/2022/9288452] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 01/15/2022] [Indexed: 12/13/2022]
Abstract
One of the leading causes of deaths around the globe is heart disease. Heart is an organ that is responsible for the supply of blood to each part of the body. Coronary artery disease (CAD) and chronic heart failure (CHF) often lead to heart attack. Traditional medical procedures (angiography) for the diagnosis of heart disease have higher cost as well as serious health concerns. Therefore, researchers have developed various automated diagnostic systems based on machine learning (ML) and data mining techniques. ML-based automated diagnostic systems provide an affordable, efficient, and reliable solutions for heart disease detection. Various ML, data mining methods, and data modalities have been utilized in the past. Many previous review papers have presented systematic reviews based on one type of data modality. This study, therefore, targets systematic review of automated diagnosis for heart disease prediction based on different types of modalities, i.e., clinical feature-based data modality, images, and ECG. Moreover, this paper critically evaluates the previous methods and presents the limitations in these methods. Finally, the article provides some future research directions in the domain of automated heart disease detection based on machine learning and multiple of data modalities.
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Affiliation(s)
- Ashir Javeed
- Aging Research Center, Karolinska Institutet, Sweden
| | - Shafqat Ullah Khan
- Department of Electrical Engineering, University of Science and Technology Bannu, Pakistan
| | - Liaqat Ali
- Department of Electronics, University of Buner, Buner, Pakistan
| | - Sardar Ali
- School of Engineering and Applied Sciences, Isra University Islamabad Campus, Pakistan
| | - Yakubu Imrana
- School of Engineering, University of Development Studies, Tamale, Ghana
- School of Computer Science and Engineering, University of Electronic Science and Technology of China (UESTC), Chengdu, China
| | - Atiqur Rahman
- Department of Computer Science, University of Science and Technology Bannu, Pakistan
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Loh BCS, Then PHH. Deep learning for cardiac computer-aided diagnosis: benefits, issues & solutions. Mhealth 2017; 3:45. [PMID: 29184897 PMCID: PMC5682365 DOI: 10.21037/mhealth.2017.09.01] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 08/28/2017] [Indexed: 12/27/2022] Open
Abstract
Cardiovascular diseases are one of the top causes of deaths worldwide. In developing nations and rural areas, difficulties with diagnosis and treatment are made worse due to the deficiency of healthcare facilities. A viable solution to this issue is telemedicine, which involves delivering health care and sharing medical knowledge at a distance. Additionally, mHealth, the utilization of mobile devices for medical care, has also proven to be a feasible choice. The integration of telemedicine, mHealth and computer-aided diagnosis systems with the fields of machine and deep learning has enabled the creation of effective services that are adaptable to a multitude of scenarios. The objective of this review is to provide an overview of heart disease diagnosis and management, especially within the context of rural healthcare, as well as discuss the benefits, issues and solutions of implementing deep learning algorithms to improve the efficacy of relevant medical applications.
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Affiliation(s)
- Brian C S Loh
- Swinburne University of Technology Sarawak Campus, Kuching, Sarawak, Malaysia
| | - Patrick H H Then
- Swinburne University of Technology Sarawak Campus, Kuching, Sarawak, Malaysia
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Shepherd JA, Ng BK, Fan B, Schwartz AV, Cawthon P, Cummings SR, Kritchevsky S, Nevitt M, Santanasto A, Cootes TF. Modeling the shape and composition of the human body using dual energy X-ray absorptiometry images. PLoS One 2017; 12:e0175857. [PMID: 28423041 PMCID: PMC5397033 DOI: 10.1371/journal.pone.0175857] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Accepted: 03/31/2017] [Indexed: 12/11/2022] Open
Abstract
There is growing evidence that body shape and regional body composition are strong indicators of metabolic health. The purpose of this study was to develop statistical models that accurately describe holistic body shape, thickness, and leanness. We hypothesized that there are unique body shape features that are predictive of mortality beyond standard clinical measures. We developed algorithms to process whole-body dual-energy X-ray absorptiometry (DXA) scans into body thickness and leanness images. We performed statistical appearance modeling (SAM) and principal component analysis (PCA) to efficiently encode the variance of body shape, leanness, and thickness across sample of 400 older Americans from the Health ABC study. The sample included 200 cases and 200 controls based on 6-year mortality status, matched on sex, race and BMI. The final model contained 52 points outlining the torso, upper arms, thighs, and bony landmarks. Correlation analyses were performed on the PCA parameters to identify body shape features that vary across groups and with metabolic risk. Stepwise logistic regression was performed to identify sex and race, and predict mortality risk as a function of body shape parameters. These parameters are novel body composition features that uniquely identify body phenotypes of different groups and predict mortality risk. Three parameters from a SAM of body leanness and thickness accurately identified sex (training AUC = 0.99) and six accurately identified race (training AUC = 0.91) in the sample dataset. Three parameters from a SAM of only body thickness predicted mortality (training AUC = 0.66, validation AUC = 0.62). Further study is warranted to identify specific shape/composition features that predict other health outcomes.
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Affiliation(s)
- John A. Shepherd
- Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, California, United States of America
- Graduate Program in Bioengineering, University of California San Francisco, San Francisco, California, United States of America
- Graduate Program in Bioengineering, University of California, Berkeley, California, United States of America
| | - Bennett K. Ng
- Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, California, United States of America
- Graduate Program in Bioengineering, University of California San Francisco, San Francisco, California, United States of America
- Graduate Program in Bioengineering, University of California, Berkeley, California, United States of America
| | - Bo Fan
- Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, California, United States of America
| | - Ann V. Schwartz
- Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America
| | - Peggy Cawthon
- San Francisco Coordinating Center, California Pacific Medical Center Research Institute, San Francisco, California, United States of America
| | - Steven R. Cummings
- San Francisco Coordinating Center, California Pacific Medical Center Research Institute, San Francisco, California, United States of America
| | - Stephen Kritchevsky
- San Francisco Coordinating Center, California Pacific Medical Center Research Institute, San Francisco, California, United States of America
| | - Michael Nevitt
- Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America
| | - Adam Santanasto
- Department of Epidemiology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
| | - Timothy F. Cootes
- Centre for Imaging Sciences, University of Manchester, Manchester, United Kingdom
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Baker-Lepain JC, Lynch JA, Parimi N, McCulloch CE, Nevitt MC, Corr M, Lane NE. Variant alleles of the Wnt antagonist FRZB are determinants of hip shape and modify the relationship between hip shape and osteoarthritis. ACTA ACUST UNITED AC 2012; 64:1457-65. [PMID: 22544526 DOI: 10.1002/art.34526] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE To test whether single-nucleotide polymorphisms (SNPs) of the FRZB gene are associated with hip shape, and to determine whether FRZB variant alleles affect the relationship between hip shape and radiographic osteoarthritis (OA) of the hip. METHODS A nested case-control study of Caucasian women, age ≥65 years, from the Study of Osteoporotic Fractures cohort was performed. Cases (n = 451) were defined as subjects with radiographic evidence of incident hip OA during followup, while controls (n = 601) were subjects in whom no radiographic hip OA was identified at baseline or followup. Statistical shape modeling (SSM) of the digitized hip radiographs was performed to assess the shape of the proximal femur, using 10 independent modes of shape variation generated by principal components analysis. In addition, center-edge angle and acetabular depth were assessed as geometric measurements of acetabular shape. The association of the rs288326 and rs7775 FRZB variant alleles with hip shape was analyzed using linear regression. The effect of these alleles on the relationship between hip shape and radiographic hip OA was analyzed using a logistic regression model with or without inclusion of interaction terms. RESULTS The rs288326 and rs7775 alleles were associated with the shape of the proximal femur (SSM mode 2). There was a significant interaction between the rs288326 SNP and proximal femur shape (SSM mode 2) in predicting radiographic hip OA (P for interaction = 0.022). Among subjects with the rs288326 variant allele, there was an increased likelihood of radiographic hip OA in association with increasing quartiles of proximal femur shape mode 2 (for the fourth quartile of mode 2, odds ratio 2.5, 95% confidence interval 1.15, 5.25; P for linear trend = 0.02). CONCLUSION The rs288326 and rs7775 FRZB SNPs are associated with the shape of the proximal femur. The presence of the rs288326 SNP alters the relationship between proximal femur shape and incident radiographic hip OA. These findings suggest that FRZB may serve an important role in determining hip shape and may modify the relationship between hip shape and OA.
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Baker-LePain JC, Luker KR, Lynch JA, Parimi N, Nevitt MC, Lane NE. Active shape modeling of the hip in the prediction of incident hip fracture. J Bone Miner Res 2011; 26:468-74. [PMID: 20878772 PMCID: PMC3179295 DOI: 10.1002/jbmr.254] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The objective of this study was to evaluate right proximal femur shape as a risk factor for incident hip fracture using active shape modeling (ASM). A nested case-control study of white women 65 years of age and older enrolled in the Study of Osteoporotic Fractures (SOF) was performed. Subjects (n = 168) were randomly selected from study participants who experienced hip fracture during the follow-up period (mean 8.3 years). Controls (n = 231) had no fracture during follow-up. Subjects with baseline radiographic hip osteoarthritis were excluded. ASM of digitized right hip radiographs generated 10 independent modes of variation in proximal femur shape that together accounted for 95% of the variance in proximal femur shape. The association of ASM modes with incident hip fracture was analyzed by logistic regression. Together, the 10 ASM modes demonstrated good discrimination of incident hip fracture. In models controlling for age and body mass index (BMI), the area under receiver operating characteristic (AUROC) curve for hip shape was 0.813, 95% confidence interval (CI) 0.771-0.854 compared with models containing femoral neck bone mineral density (AUROC = 0.675, 95% CI 0.620-0.730), intertrochanteric bone mineral density (AUROC = 0.645, 95% CI 0.589-0.701), femoral neck length (AUROC = 0.631, 95% CI 0.573-0.690), or femoral neck width (AUROC = 0.633, 95% CI 0.574-0.691). The accuracy of fracture discrimination was improved by combining ASM modes with femoral neck bone mineral density (AUROC = 0.835, 95% CI 0.795-0.875) or with intertrochanteric bone mineral density (AUROC = 0.834, 95% CI 0.794-0.875). Hips with positive standard deviations of ASM mode 4 had the highest risk of incident hip fracture (odds ratio = 2.48, 95% CI 1.68-3.31, p < .001). We conclude that variations in the relative size of the femoral head and neck are important determinants of incident hip fracture. The addition of hip shape to fracture-prediction tools may improve the risk assessment for osteoporotic hip fractures.
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Affiliation(s)
- Julie C Baker-LePain
- Department of Medicine, University of California-San Francisco, San Francisco, CA, USA
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