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Akbar S, Sharif M, Akram MU, Saba T, Mahmood T, Kolivand M. Automated techniques for blood vessels segmentation through fundus retinal images: A review. Microsc Res Tech 2019; 82:153-170. [DOI: 10.1002/jemt.23172] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Revised: 09/26/2018] [Accepted: 10/17/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Shahzad Akbar
- Department of Computer ScienceCOMSATS University Islamabad, Wah Campus Wah Pakistan
| | - Muhammad Sharif
- Department of Computer ScienceCOMSATS University Islamabad, Wah Campus Wah Pakistan
| | - Muhammad Usman Akram
- Department of Computer EngineeringCollege of E&ME, National University of Sciences and Technology Islamabad Pakistan
| | - Tanzila Saba
- College of Computer and Information SciencesPrince Sultan University Riyadh Saudi Arabia
| | - Toqeer Mahmood
- Department of Computer ScienceUniversity of Engineering and Technology Taxila Pakistan
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Youssef D, Solouma NH. Accurate detection of blood vessels improves the detection of exudates in color fundus images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2012; 108:1052-1061. [PMID: 22818584 DOI: 10.1016/j.cmpb.2012.06.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Revised: 05/22/2012] [Accepted: 06/26/2012] [Indexed: 06/01/2023]
Abstract
Exudates are one of the earliest and most prevalent symptoms of diseases leading to blindness such as diabetic retinopathy and macular degeneration. Certain areas of the retina with such conditions are to be photocoagulated by laser to stop the disease progress and prevent blindness. Outlining these areas is dependent on outlining the lesions and the anatomic structures of the retina. In this paper, we provide a new method for the detection of blood vessels that improves the detection of exudates in fundus photographs. The method starts with an edge detection algorithm which results in a over segmented image. Then the new feature-based algorithm can be used to accurately detect the blood vessels. This algorithm considers the characteristics of a retinal blood vessel such as its width range, intensities and orientations for the purpose of selective segmentation. Because of its bulb shape and its color similarity with exudates, the optic disc can be detected using the common Hough transform technique. The extracted blood vessel tree and optic disc could be subtracted from the over segmented image to get an initial estimate of exudates. The final estimation of exudates can then be obtained by morphological reconstruction based on the appearance of exudates. This method is shown to be promising since it increases the sensitivity and specificity of exudates detection to 80% and 100% respectively.
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Li HK, Horton M, Bursell SE, Cavallerano J, Zimmer-Galler I, Tennant M, Abramoff M, Chaum E, DeBuc DC, Leonard-Martin T, Winchester M. Telehealth practice recommendations for diabetic retinopathy, second edition. Telemed J E Health 2011; 17:814-37. [PMID: 21970573 PMCID: PMC6469533 DOI: 10.1089/tmj.2011.0075] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2011] [Revised: 04/25/2011] [Accepted: 04/25/2011] [Indexed: 12/18/2022] Open
Abstract
Ocular telemedicine and telehealth have the potential to decrease vision loss from DR. Planning, execution, and follow-up are key factors for success. Telemedicine is complex, requiring the services of expert teams working collaboratively to provide care matching the quality of conventional clinical settings. Improving access and outcomes, however, makes telemedicine a valuable tool for our diabetic patients. Programs that focus on patient needs, consider available resources, define clear goals, promote informed expectations, appropriately train personnel, and adhere to regulatory and statutory requirements have the highest chance of achieving success.
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Affiliation(s)
- Helen K. Li
- Department of Ophthalmology, Weill Cornell Medical College/The Methodist Hospital, Houston, Texas
- School of Biomedical Informatics, University of Texas Health Science Center, Houston, Texas
- Department of Ophthalmology, Jefferson Medical College, Philadelphia, Pennsylvannia
| | - Mark Horton
- Phoenix Indian Medical Center, Phoenix, Arizona
| | - Sven-Erik Bursell
- Telehealth Research Institute, John A. Burns School of Medicine, Honolulu, Hawaii
| | - Jerry Cavallerano
- Joslin Diabetes Center, Beetham Eye Institute, Boston, Massachusetts
| | | | - Mathew Tennant
- Department of Ophthalmology, University of Alberta, Edmonton, Canada
| | - Michael Abramoff
- Department of Ophthalmology and Visual Sciences, The University of Iowa Hospital and Clinics, Iowa City, Iowa
| | - Edward Chaum
- Hamilton Eye Institute, University of Tennessee Health Science Center, Memphis, Tennessee
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FANG BIN, YOU XINGE, TANG YUANYAN, CHEN WENSHENG. MORPHOLOGICAL STRUCTURE RECONSTRUCTION OF RETINAL VESSELS IN FUNDUS IMAGES. INT J PATTERN RECOGN 2011. [DOI: 10.1142/s0218001405004356] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Vessels in retinal fundus images are useful in revealing the severity of eye-related diseases. In addition, they can act as landmarks for localizing lesions or the central vision area, and guide laser treatment of neovascularization. In this paper, we propose a two-stage scheme to extract vessels and reconstruct the morphological structure of vessels in retinal images. First, we employ mathematical morphology techniques to highlight large and small vessels with respect to their spatial properties. Different curvature response between vessel and noise patterns allows the use of curvature evaluation to remove enhanced vessel-like noise. A set of linear filters finalize the vessel map. However, the resulting vascular structure is incomplete of some important features in bifurcation points and central reflex. In order to rectify the pitfall, a reconstruction process is performed using dynamic local region growth to recover the morphological structure of vessels. Average performance of our method to extract vessels is 83.7% of TPR(True positive rate) and 3.8% of FPR(False positive rate) for 35 retinal images which include 21 abnormal images.
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Affiliation(s)
- BIN FANG
- College of Computer Science, Chongqing University, 400044, P. R. China
| | - XINGE YOU
- College of Computer Science, Chongqing University, 400044, P. R. China
- Faculty of Mathematics and Computer Science, Hubei University, 430062, P. R. China
| | - YUAN YAN TANG
- College of Computer Science, Chongqing University, 400044, P. R. China
| | - WEN SHENG CHEN
- College of Science, Shenzhen University Shenzhen, P. R. China, 518060, P. R. China
- Key Laboratory of Mathematics Mechanization, CAS, Beijing 100080, P. R. China
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Bernardes R, Serranho P, Lobo C. Digital ocular fundus imaging: a review. ACTA ACUST UNITED AC 2011; 226:161-81. [PMID: 21952522 DOI: 10.1159/000329597] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2011] [Accepted: 05/23/2011] [Indexed: 01/09/2023]
Abstract
Ocular fundus imaging plays a key role in monitoring the health status of the human eye. Currently, a large number of imaging modalities allow the assessment and/or quantification of ocular changes from a healthy status. This review focuses on the main digital fundus imaging modality, color fundus photography, with a brief overview of complementary techniques, such as fluorescein angiography. While focusing on two-dimensional color fundus photography, the authors address the evolution from nondigital to digital imaging and its impact on diagnosis. They also compare several studies performed along the transitional path of this technology. Retinal image processing and analysis, automated disease detection and identification of the stage of diabetic retinopathy (DR) are addressed as well. The authors emphasize the problems of image segmentation, focusing on the major landmark structures of the ocular fundus: the vascular network, optic disk and the fovea. Several proposed approaches for the automatic detection of signs of disease onset and progression, such as microaneurysms, are surveyed. A thorough comparison is conducted among different studies with regard to the number of eyes/subjects, imaging modality, fundus camera used, field of view and image resolution to identify the large variation in characteristics from one study to another. Similarly, the main features of the proposed classifications and algorithms for the automatic detection of DR are compared, thereby addressing computer-aided diagnosis and computer-aided detection for use in screening programs.
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Affiliation(s)
- Rui Bernardes
- Institute of Biomedical Research on Light and Image, Faculty of Medicine, University of Coimbra, and Coimbra University Hospital, Coimbra, Portugal.
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Broehan AM, Rudolph T, Amstutz CA, Kowal JH. Real-time multimodal retinal image registration for a computer-assisted laser photocoagulation system. IEEE Trans Biomed Eng 2011; 58:2816-24. [PMID: 21689999 DOI: 10.1109/tbme.2011.2159860] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
An algorithm for the real-time registration of a retinal video sequence captured with a scanning digital ophthalmoscope (SDO) to a retinal composite image is presented. This method is designed for a computer-assisted retinal laser photocoagulation system to compensate for retinal motion and hence enhance the accuracy, speed, and patient safety of retinal laser treatments. The procedure combines intensity and feature-based registration techniques. For the registration of an individual frame, the translational frame-to-frame motion between preceding and current frame is detected by normalized cross correlation. Next, vessel points on the current video frame are identified and an initial transformation estimate is constructed from the calculated translation vector and the quadratic registration matrix of the previous frame. The vessel points are then iteratively matched to the segmented vessel centerline of the composite image to refine the initial transformation and register the video frame to the composite image. Criteria for image quality and algorithm convergence are introduced, which assess the exclusion of single frames from the registration process and enable a loss of tracking signal if necessary. The algorithm was successfully applied to ten different video sequences recorded from patients. It revealed an average accuracy of 2.47 ± 2.0 pixels (∼23.2 ± 18.8 μm) for 2764 evaluated video frames and demonstrated that it meets the clinical requirements.
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Delibasis KK, Kechriniotis AI, Tsonos C, Assimakis N. Automatic model-based tracing algorithm for vessel segmentation and diameter estimation. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2010; 100:108-22. [PMID: 20363522 DOI: 10.1016/j.cmpb.2010.03.004] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2009] [Accepted: 03/01/2010] [Indexed: 05/16/2023]
Abstract
An automatic algorithm capable of segmenting the whole vessel tree and calculate vessel diameter and orientation in a digital ophthalmologic image is presented in this work. The algorithm is based on a parametric model of a vessel that can assume arbitrarily complex shape and a simple measure of match that quantifies how well the vessel model matches a given angiographic image. An automatic vessel tracing algorithm is described that exploits the geometric model and actively seeks vessel bifurcation, without user intervention. The proposed algorithm uses the geometric vessel model to determine the vessel diameter at each detected central axis pixel. For this reason, the algorithm is fine tuned using a subset of ophthalmologic images of the publically available DRIVE database, by maximizing vessel segmentation accuracy. The proposed algorithm is then applied to the remaining ophthalmological images of the DRIVE database. The segmentation results of the proposed algorithm compare favorably in terms of accuracy with six other well established vessel detection techniques, outperforming three of them in the majority of the available ophthalmologic images. The proposed algorithm achieves subpixel root mean square central axis positioning error that outperforms the non-expert based vessel segmentation, whereas the accuracy of vessel diameter estimation is comparable to that of the non-expert based vessel segmentation.
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Affiliation(s)
- Konstantinos K Delibasis
- School of Electrical and Computer Engineering, National Technical University of Athens, Athens, Greece
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Broehan AM, Tappeiner C, Rothenbuehler SP, Rudolph T, Amstutz CA, Kowal JH. Multimodal registration procedure for the initial spatial alignment of a retinal video sequence to a retinal composite image. IEEE Trans Biomed Eng 2010; 57:1991-2000. [PMID: 20460204 DOI: 10.1109/tbme.2010.2048710] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Accurate placement of lesions is crucial for the effectiveness and safety of a retinal laser photocoagulation treatment. Computer assistance provides the capability for improvements to treatment accuracy and execution time. The idea is to use video frames acquired from a scanning digital ophthalmoscope (SDO) to compensate for retinal motion during laser treatment. This paper presents a method for the multimodal registration of the initial frame from an SDO retinal video sequence to a retinal composite image, which may contain a treatment plan. The retinal registration procedure comprises the following steps: 1) detection of vessel centerline points and identification of the optic disc; 2) prealignment of the video frame and the composite image based on optic disc parameters; and 3) iterative matching of the detected vessel centerline points in expanding matching regions. This registration algorithm was designed for the initialization of a real-time registration procedure that registers the subsequent video frames to the composite image. The algorithm demonstrated its capability to register various pairs of SDO video frames and composite images acquired from patients.
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Affiliation(s)
- A Martina Broehan
- artificial organ (ARTORG) Center for Biomedical Engineering Research, University of Bern, Bern 3014, Switzerland
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Abstract
PURPOSE To describe a novel computer-based image analysis method that is being developed to assist and automate the diagnosis of retinal disease. METHODS Content-based image retrieval is the process of retrieving related images from large database collections using their pictorial content. The content feature list becomes the index for storage, search, and retrieval of related images from a library based upon specific visual characteristics. Low-level analyses use feature description models and higher-level analyses use perceptual organization and spatial relationships, including clinical metadata, to extract semantic information. RESULTS We defined, extracted, and tested a large number of region- and lesion-based features from a dataset of 395 retinal images. Using a statistical hold-one-out method, independent queries for each image were submitted to the system and a diagnostic prediction was formulated. The diagnostic sensitivity for all stratified levels of age-related macular degeneration ranged from 75% to 100%. Similarly, the sensitivity of detection and accuracy for proliferative diabetic retinopathy ranged from 75% to 91.7% and for nonproliferative diabetic retinopathy, ranged from 75% to 94.7%. The overall purity of the diagnosis (specificity) for all disease states in the dataset was 91.3%. CONCLUSIONS The probabilistic nature of content-based image retrieval permits us to make statistically relevant predictions regarding the presence, severity, and manifestations of common retinal diseases from digital images in an automated and deterministic manner.
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Tobin KW, Chaum E, Govindasamy VP, Karnowski TP. Detection of anatomic structures in human retinal imagery. IEEE TRANSACTIONS ON MEDICAL IMAGING 2007; 26:1729-39. [PMID: 18092741 DOI: 10.1109/tmi.2007.902801] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
The widespread availability of electronic imaging devices throughout the medical community is leading to a growing body of research on image processing and analysis to diagnose retinal disease such as diabetic retinopathy (DR). Productive computer-based screening of large, at-risk populations at low cost requires robust, automated image analysis. In this paper we present results for the automatic detection of the optic nerve and localization of the macula using digital red-free fundus photography. Our method relies on the accurate segmentation of the vasculature of the retina followed by the determination of spatial features describing the density, average thickness, and average orientation of the vasculature in relation to the position of the optic nerve. Localization of the macula follows using knowledge of the optic nerve location to detect the horizontal raphe of the retina using a geometric model of the vasculature. We report 90.4% detection performance for the optic nerve and 92.5% localization performance for the macula for red-free fundus images representing a population of 345 images corresponding to 269 patients with 18 different pathologies associated with DR and other common retinal diseases such as age-related macular degeneration.
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Affiliation(s)
- Kenneth W Tobin
- Image Science and Machine Vision Group, Oak Ridge National Laboratory, Oak Ridge, TN 37831-6010, USA.
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MacKeben M, Gofen A. Gaze-contingent display for retinal function testing by scanning laser ophthalmoscope. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2007; 24:1402-10. [PMID: 17429486 DOI: 10.1364/josaa.24.001402] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
To overcome the inconvenience and imprecision of conventional software performing microperimetry with the scanning laser ophthalmoscope (SLO) in clinical settings, we developed a "smart microperimetry" program. It takes advantage of modern computer technology, especially processing speed and high rate of data transfer. It allows continuous on-line processing of the image of the retina and instantaneous correction of stimulus placement according to involuntary eye movements. Thus, the program provides gaze-contingent display of the stimulus and senses the conditions for image tracking so that stimulation during large eye movements, blinks, and temporarily flawed image quality can be prevented. These features have greatly increased the efficiency and precision of SLO data in comparison with those obtained by older programs.
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Affiliation(s)
- Manfred MacKeben
- The Smith-Kettlewell Eye Research Institute, San Francisco, CA 94115, USA.
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Sofka M, Stewart CV. Retinal vessel centerline extraction using multiscale matched filters, confidence and edge measures. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:1531-46. [PMID: 17167990 DOI: 10.1109/tmi.2006.884190] [Citation(s) in RCA: 95] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Motivated by the goals of improving detection of low-contrast and narrow vessels and eliminating false detections at nonvascular structures, a new technique is presented for extracting vessels in retinal images. The core of the technique is a new likelihood ratio test that combines matched-filter responses, confidence measures and vessel boundary measures. Matched filter responses are derived in scale-space to extract vessels of widely varying widths. A vessel confidence measure is defined as a projection of a vector formed from a normalized pixel neighborhood onto a normalized ideal vessel profile. Vessel boundary measures and associated confidences are computed at potential vessel boundaries. Combined, these responses form a six-dimensional measurement vector at each pixel. A training technique is used to develop a mapping of this vector to a likelihood ratio that measures the "vesselness" at each pixel. Results comparing this vesselness measure to matched filters alone and to measures based on the Hessian of intensities show substantial improvements, both qualitatively and quantitatively. The Hessian can be used in place of the matched filter to obtain similar but less-substantial improvements or to steer the matched filter by preselecting kernel orientations. Finally, the new vesselness likelihood ratio is embedded into a vessel tracing framework, resulting in an efficient and effective vessel centerline extraction algorithm.
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Affiliation(s)
- Michal Sofka
- Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180-3590, USA.
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Abstract
This work studies retinal image registration in the context of the National Institutes of Health (NIH) Early Treatment Diabetic Retinopathy Study (ETDRS) standard. The ETDRS imaging protocol specifies seven fields of each retina and presents three major challenges for the image registration task. First, small overlaps between adjacent fields lead to inadequate landmark points for feature-based methods. Second, the non-uniform contrast/intensity distributions due to imperfect data acquisition will deteriorate the performance of area-based techniques. Third, high-resolution images contain large homogeneous nonvascular/texureless regions that weaken the capabilities of both feature-based and area-based techniques. In this work, we propose a hybrid retinal image registration approach for ETDRS images that effectively combines both area-based and feature-based methods. Four major steps are involved. First, the vascular tree is extracted by using an efficient local entropy-based thresholding technique. Next, zeroth-order translation is estimated by maximizing mutual information based on the binary image pair (area-based). Then image quality assessment regarding the ETDRS field definition is performed based on the translation model. If the image pair is accepted, higher-order transformations will be involved. Specifically, we use two types of features, landmark points and sampling points, for affine/quadratic model estimation. Three empirical conditions are derived experimentally to control the algorithm progress, so that we can achieve the lowest registration error and the highest success rate. Simulation results on 504 pairs of ETDRS images show the effectiveness and robustness of the proposed algorithm.
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Affiliation(s)
- Thitiporn Chanwimaluang
- School of Electrical and Computer Engineering, Oklahoma State University, Stillwater 74078, USA.
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