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Zhu T, Yin L, He J, Wei Z, Yang X, Tian J, Hui H. Accurate Concentration Recovery for Quantitative Magnetic Particle Imaging Reconstruction via Nonconvex Regularization. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:2949-2959. [PMID: 38557624 DOI: 10.1109/tmi.2024.3383468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Magnetic particle imaging (MPI) uses nonlinear response signals to noninvasively detect magnetic nanoparticles in space, and its quantitative properties hold promise for future precise quantitative treatments. In reconstruction, the system matrix based method necessitates suitable regularization terms, such as Tikhonov or non-negative fused lasso (NFL) regularization, to stabilize the solution. While NFL regularization offers clearer edge information than Tikhonov regularization, it carries a biased estimate of the l1 penalty, leading to an underestimation of the reconstructed concentration and adversely affecting the quantitative properties. In this paper, a new nonconvex regularization method including min-max concave (MC) and total variation (TV) regularization is proposed. This method utilized MC penalty to provide nearly unbiased sparse constraints and adds the TV penalty to provide a uniform intensity distribution of images. By combining the alternating direction multiplication method (ADMM) and the two-step parameter selection method, a more accurate quantitative MPI reconstruction was realized. The performance of the proposed method was verified on the simulation data, the Open-MPI dataset, and measured data from a homemade MPI scanner. The results indicate that the proposed method achieves better image quality while maintaining the quantitative properties, thus overcoming the drawback of intensity underestimation by the NFL method while providing edge information. In particular, for the measured data, the proposed method reduced the relative error in the intensity of the reconstruction results from 28% to 8%.
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Durka P, Dovgialo M, Duszyk-Bogorodzka A, Biegański P. Two-Stage Atomic Decomposition of Multichannel EEG and the Previously Undetectable Sleep Spindles. SENSORS (BASEL, SWITZERLAND) 2024; 24:842. [PMID: 38339559 PMCID: PMC10856903 DOI: 10.3390/s24030842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 01/16/2024] [Accepted: 01/25/2024] [Indexed: 02/12/2024]
Abstract
We propose a two-step procedure for atomic decomposition of multichannel EEGs, based upon multivariate matching pursuit and dipolar inverse solution, from which atoms representing relevant EEG structures are selected according to prior knowledge. We detect sleep spindles in 147 polysomnographic recordings from the Montreal Archive of Sleep Studies. Detection is compared with human scorers and two state-of-the-art algorithms, which find only about a third of the structures conforming to the definition of sleep spindles and detected by the proposed method. We provide arguments supporting the thesis that the previously undetectable sleep spindles share the same properties as those marked by human experts and previously applied methods, and were previously omitted only because of unfavorable local signal-to-noise ratios, obscuring their visibility to both human experts and algorithms replicating their markings. All detected EEG structures are automatically parametrized by their time and frequency centers, width duration, phase, and spatial location of an equivalent dipolar source within the brain. It allowed us, for the first time, to estimate the spatial gradient of sleep spindles frequencies, which not only confirmed quantitatively the well-known prevalence of higher frequencies in posterior regions, but also revealed a significant gradient in the sagittal plane. The software used in this study is freely available.
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Affiliation(s)
- Piotr Durka
- Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland; (M.D.); (P.B.)
| | - Marian Dovgialo
- Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland; (M.D.); (P.B.)
| | - Anna Duszyk-Bogorodzka
- Behavioural Neuroscience Lab, Institute of Psychology, SWPS University, 03-815 Warsaw, Poland;
| | - Piotr Biegański
- Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland; (M.D.); (P.B.)
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New Criteria for Synchronization of Multilayer Neural Networks via Aperiodically Intermittent Control. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:8157794. [PMID: 36203729 PMCID: PMC9532079 DOI: 10.1155/2022/8157794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Revised: 08/03/2022] [Accepted: 08/08/2022] [Indexed: 11/21/2022]
Abstract
In this paper, the globally asymptotic synchronization of multi-layer neural networks is studied via aperiodically intermittent control. Due to the property of intermittent control, it is very hard to deal with the effect of time-varying delays and ascertain the control and rest widths for intermittent control. A new lemma with generalized Halanay-type inequalities are proposed first. Then, by constructing a new Lyapunov–Krasovskii functional and utilizing linear programming methods, several useful criteria are derived to ensure the multilayer neural networks achieve asymptotic synchronization. Moreover, an aperiodically intermittent control is designed, which has no direct relationship with control widths and rest widths and extends existing aperiodically intermittent control techniques, the control gains are designed by solving the linear programming. Finally, a numerical example is provided to confirm the effectiveness of the proposed theoretical results.
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Del Rocio Hernandez-Castanon V, Le Cam S, Ranta R. Sparse EEG source localization in frequency domain. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:6428-6432. [PMID: 34892583 DOI: 10.1109/embc46164.2021.9630279] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
This work presents an approach for EEG source localization when strong priors on predominant frequencies in the activities of the source are available. We describe the fundamentals of the used source reconstruction method based on a greedy approach, which can be applied indifferently in the time or frequency domain. The method is evaluated using simulated data reproducing realistic recorded activities in the context of fast periodic visual stimulation. In particular the advantage of reconstructing the source in the frequency domain against time domain is quantified in a realistic setup. Finally, the performances of the method are illustrated on real EEG signals recorded during a fast periodic visual stimulation task.
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Shan X, Huo S, Yang L, Cao J, Zou J, Chen L, Sarrigiannis PG, Zhao Y. A Revised Hilbert-Huang Transformation to Track Non-Stationary Association of Electroencephalography Signals. IEEE Trans Neural Syst Rehabil Eng 2021; 29:841-851. [PMID: 33909567 DOI: 10.1109/tnsre.2021.3076311] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The time-varying cross-spectrum method has been used to effectively study transient and dynamic brain functional connectivity between non-stationary electroencephalography (EEG) signals. Wavelet-based cross-spectrum is one of the most widely implemented methods, but it is limited by the spectral leakage caused by the finite length of the basic function that impacts the time and frequency resolutions. This paper proposes a new time-frequency brain functional connectivity analysis framework to track the non-stationary association of two EEG signals based on a Revised Hilbert-Huang Transform (RHHT). The framework can estimate the cross-spectrum of decomposed components of EEG, followed by a surrogate significance test. The results of two simulation examples demonstrate that, within a certain statistical confidence level, the proposed framework outperforms the wavelet-based method in terms of accuracy and time-frequency resolution. A case study on classifying epileptic patients and healthy controls using interictal seizure-free EEG data is also presented. The result suggests that the proposed method has the potential to better differentiate these two groups benefiting from the enhanced measure of dynamic time-frequency association.
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Liu B, Zhang L, Nie P, Han X, Han Y. Steered sample algorithm for acoustic source localization. PLoS One 2020; 15:e0241129. [PMID: 33105477 PMCID: PMC7588096 DOI: 10.1371/journal.pone.0241129] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 10/08/2020] [Indexed: 11/19/2022] Open
Abstract
High-precision source localization depends on many factors, including a suitable location method. Beamforming-based methods, such as the steered response power (SRP), are a common type of acoustic localization methods. However, these methods have low spatial resolution. The SRP method with phase transform (SRP-PHAT) improves the spatial resolution of SRP and is one of the most effective and robust methods for source localization. However, the introduction of a phase transform to SRP might amplify the power of the noise and result in many local extrema in the SRP space, which has a negative impact on source localization. In this paper, a steered sample algorithm (SSA) based on the reciprocity of wave propagation for acoustic source localization is proposed. The SSA localization process is similar to the hyperbolic Radon transform, which is theoretically analyzed and is the most essential difference form the SRP/SRP-PHAT. Compared with the SRP-PHAT, the experimental results demonstrate that the SSA perform better when it comes to array signal positioning with limited array elements and narrow azimuth signal, where SSA can achieve high precision positioning with lower SNR.
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Affiliation(s)
- Bin Liu
- Shanxi Key Laboratory of Information Survey & Processing, North University of China, Taiyuan, China
- School of Information and Communication Engineering, North University of China, Taiyuan, China
| | - Lichao Zhang
- School of Information and Communication Engineering, North University of China, Taiyuan, China
| | - Pengfei Nie
- Shanxi Key Laboratory of Information Survey & Processing, North University of China, Taiyuan, China
- School of Information and Communication Engineering, North University of China, Taiyuan, China
- * E-mail:
| | - Xingcheng Han
- Shanxi Key Laboratory of Information Survey & Processing, North University of China, Taiyuan, China
- School of Information and Communication Engineering, North University of China, Taiyuan, China
| | - Yan Han
- Shanxi Key Laboratory of Information Survey & Processing, North University of China, Taiyuan, China
- School of Information and Communication Engineering, North University of China, Taiyuan, China
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Asadzadeh S, Yousefi Rezaii T, Beheshti S, Delpak A, Meshgini S. A systematic review of EEG source localization techniques and their applications on diagnosis of brain abnormalities. J Neurosci Methods 2020; 339:108740. [DOI: 10.1016/j.jneumeth.2020.108740] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Revised: 04/13/2020] [Accepted: 04/13/2020] [Indexed: 12/12/2022]
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Samiappan D, Latha S, Rao T, Verma D, Sriharsha CSA. Enhancing Machine Learning Aptitude Using Significant Cluster Identification for Augmented Image Refining. INT J PATTERN RECOGN 2019. [DOI: 10.1142/s021800142051009x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Enhancing the image to remove noise, preserving the useful features and edges are the most important tasks in image analysis. In this paper, Significant Cluster Identification for Maximum Edge Preservation (SCI-MEP), which works in parallel with clustering algorithms and improved efficiency of the machine learning aptitude, is proposed. Affinity propagation (AP) is a base method to obtain clusters from a learnt dictionary, with an adaptive window selection, which are then refined using SCI-MEP to preserve the semantic components of the image. Since only the significant clusters are worked upon, the computational time drastically reduces. The flexibility of SCI-MEP allows it to be integrated with any clustering algorithm to improve its efficiency. The method is tested and verified to remove Gaussian noise, rain noise and speckle noise from images. Our results have shown that SCI-MEP considerably optimizes the existing algorithms in terms of performance evaluation metrics.
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Affiliation(s)
- Dhanalakshmi Samiappan
- ECE Department, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - S. Latha
- ECE Department, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - T. Rama Rao
- ECE Department, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
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Muñoz-Gutiérrez PA, Giraldo E, Bueno-López M, Molinas M. Localization of Active Brain Sources From EEG Signals Using Empirical Mode Decomposition: A Comparative Study. Front Integr Neurosci 2018; 12:55. [PMID: 30450041 PMCID: PMC6224487 DOI: 10.3389/fnint.2018.00055] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 10/16/2018] [Indexed: 11/21/2022] Open
Abstract
The localization of active brain sources from Electroencephalogram (EEG) is a useful method in clinical applications, such as the study of localized epilepsy, evoked-related-potentials, and attention deficit/hyperactivity disorder. The distributed-source model is a common method to estimate neural activity in the brain. The location and amplitude of each active source are estimated by solving the inverse problem by regularization or using Bayesian methods with spatio-temporal constraints. Frequency and spatio-temporal constraints improve the quality of the reconstructed neural activity. However, separation into frequency bands is beneficial when the relevant information is in specific sub-bands. We improved frequency-band identification and preserved good temporal resolution using EEG pre-processing techniques with good frequency band separation and temporal resolution properties. The identified frequency bands were included as constraints in the solution of the inverse problem by decomposing the EEG signals into frequency bands through various methods that offer good frequency and temporal resolution, such as empirical mode decomposition (EMD) and wavelet transform (WT). We present a comparative analysis of the accuracy of brain-source reconstruction using these techniques. The accuracy of the spatial reconstruction was assessed using the Wasserstein metric for real and simulated signals. We approached the mode-mixing problem, inherent to EMD, by exploring three variants of EMD: masking EMD, Ensemble-EMD (EEMD), and multivariate EMD (MEMD). The results of the spatio-temporal brain source reconstruction using these techniques show that masking EMD and MEMD can largely mitigate the mode-mixing problem and achieve a good spatio-temporal reconstruction of the active sources. Masking EMD and EEMD achieved better reconstruction than standard EMD, Multiple Sparse Priors, or wavelet packet decomposition when EMD was used as a pre-processing tool for the spatial reconstruction (averaged over time) of the brain sources. The spatial resolution obtained using all three EMD variants was substantially better than the use of EMD alone, as the mode-mixing problem was mitigated, particularly with masking EMD and EEMD. These findings encourage further exploration into the use of EMD-based pre-processing, the mode-mixing problem, and its impact on the accuracy of brain source activity reconstruction.
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Affiliation(s)
- Pablo Andrés Muñoz-Gutiérrez
- Electronic Instrumentation Technology, Universidad del Quindío, Armenia, Colombia.,Department of Electrical Engineering, Universidad Tecnológica de Pereira, Pereira, Colombia
| | - Eduardo Giraldo
- Department of Electrical Engineering, Universidad Tecnológica de Pereira, Pereira, Colombia
| | | | - Marta Molinas
- Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway
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Tong D, Rao P, Chen Q, Ogorzalek MJ, Li X. Exponential synchronization and phase locking of a multilayer Kuramoto-oscillator system with a pacemaker. Neurocomputing 2018. [DOI: 10.1016/j.neucom.2018.04.067] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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