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Huang X, Torres‐Castro K, Varhue W, Rane A, Rasin A, Swami NS. On‐chip microfluidic buffer swap of biological samples in‐line with downstream dielectrophoresis. Electrophoresis 2022; 43:1275-1282. [PMID: 35286736 PMCID: PMC9203925 DOI: 10.1002/elps.202100304] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 12/12/2021] [Accepted: 01/24/2022] [Indexed: 11/08/2022]
Abstract
Microfluidic cell enrichment by dielectrophoresis, based on biophysical and electrophysiology phenotypes, requires that cells be resuspended from their physiological media into a lower conductivity buffer for enhancing force fields and enabling the dielectric contrast needed for separation. To ensure that sensitive cells are not subject to centrifugation for resuspension and spend minimal time outside of their culture media, we present an on‐chip microfluidic strategy for swapping cells into media tailored for dielectrophoresis. This strategy transfers cells from physiological media into a 100‐fold lower conductivity media by using tangential flows of low media conductivity at 200‐fold higher flow rate versus sample flow to promote ion diffusion over the length of a straight channel architecture that maintains laminarity of the flow‐focused sample and minimizes cell dispersion across streamlines. Serpentine channels are used downstream from the flow‐focusing region to modulate hydrodynamic resistance of the central sample outlet versus flanking outlets that remove excess buffer, so that cell streamlines are collected in the exchanged buffer with minimal dilution in cell numbers and at flow rates that support dielectrophoresis. We envision integration of this on‐chip sample preparation platform prior to or post‐dielectrophoresis, in‐line with on‐chip monitoring of the outlet sample for metrics of media conductivity, cell velocity, cell viability, cell position, and collected cell numbers, so that the cell flow rate and streamlines can be tailored for enabling dielectrophoretic separations from heterogeneous samples.
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Affiliation(s)
- Xuhai Huang
- Electrical and Computer Engineering University of Virginia Charlottesville Virginia USA
| | - Karina Torres‐Castro
- Electrical and Computer Engineering University of Virginia Charlottesville Virginia USA
| | - Walter Varhue
- Electrical and Computer Engineering University of Virginia Charlottesville Virginia USA
| | - Aditya Rane
- Department of Chemistry University of Virginia Charlottesville Virginia USA
| | - Ahmed Rasin
- Electrical and Computer Engineering University of Virginia Charlottesville Virginia USA
| | - Nathan S. Swami
- Electrical and Computer Engineering University of Virginia Charlottesville Virginia USA
- Department of Chemistry University of Virginia Charlottesville Virginia USA
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Multiplexed assessment of engineered bacterial constructs for intracellular β-galactosidase expression by redox amplification on catechol-chitosan modified nanoporous gold. Mikrochim Acta 2021; 189:4. [PMID: 34855041 DOI: 10.1007/s00604-021-05109-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2021] [Accepted: 11/11/2021] [Indexed: 10/19/2022]
Abstract
Synthetic biology approaches for rewiring of bacterial constructs to express particular intracellular factors upon induction with the target analyte are emerging as sensing paradigms for applications in environmental and in vivo monitoring. To aid in the design and optimization of bacterial constructs for sensing analytes, there is a need for lysis-free intracellular detection modalities that monitor the signal level and kinetics of expressed factors within different modified bacteria in a multiplexed manner, without requiring cumbersome surface immobilization. Herein, an electrochemical detection system on nanoporous gold that is electrofabricated with a biomaterial redox capacitor is presented for quantifying β-galactosidase expressed inside modified Escherichia coli constructs upon induction with dopamine. This nanostructure-mediated redox amplification approach on a microfluidic platform allows for multiplexed assessment of the expressed intracellular factors from different bacterial constructs suspended in distinct microchannels, with no need for cell lysis or immobilization. Since redox mediators present over the entire depth of the microchannel can interact with the electrode and with the E. coli construct in each channel, the platform exhibits high sensitivity and enables multiplexing. We envision its application in assessing synthetic biology-based approaches for comparing specificity, sensitivity, and signal response time upon induction with target analytes of interest.
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Farmehini V, Kiendzior S, Landers JP, Swami NS. Real-Time Detection and Control of Microchannel Resonance Frequency in Acoustic Trapping Systems by Monitoring Amplifier Supply Currents. ACS Sens 2021; 6:3765-3772. [PMID: 34586786 DOI: 10.1021/acssensors.1c01580] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The utilization of bulk acoustic waves from a piezoelectric transducer for selective particle trapping under flow in a microchannel is limited by the high sensitivity of the resonance frequency to tolerances in device geometry, drift during trapping, and variations in the local flow or sample conditions in each channel. This is addressed by detecting the resonance condition based on the impedance minimum obtained by monitoring the amplitude of the stimulation voltage across the piezo transducer and utilizing real-time feedback to control the stimulation frequency. However, this requires an overlap in the frequency bandwidth of the detection and the stimulation system and is also limited by the decline in the acoustic trapping power when the stimulation and resonance frequency measurement are conducted simultaneously. Instead, we present a novel circuit implementation for on-chip real-time resonance frequency measurement and feedback control based on monitoring the current drawn from the amplifier used to stimulate the piezo transducer, since the need for high measurement sensitivity in this mode does not lower the power available for stimulation of the transducer. The enhanced level of control of acoustic trapping utilizing this current mode is validated for various localized channel perturbations, including drift, wash steps, and buffer swaps, as well as for selective sperm cell trapping from a heterogeneous sample that includes lysed epithelial cells.
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Affiliation(s)
- Vahid Farmehini
- Electrical and Computer Engineering, University of Virginia, Charlottesville, Virginia 22904, United States
| | - Sadie Kiendzior
- Chemistry, University of Virginia, Charlottesville, Virginia 22904, United States
| | - James P. Landers
- Chemistry, University of Virginia, Charlottesville, Virginia 22904, United States
| | - Nathan S. Swami
- Electrical and Computer Engineering, University of Virginia, Charlottesville, Virginia 22904, United States
- Chemistry, University of Virginia, Charlottesville, Virginia 22904, United States
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DaOrazio M, Reale R, De Ninno A, Brighetti MA, Mencattini A, Businaro L, Martinelli E, Bisegna P, Travaglini A, Caselli F. Electro-optical classification of pollen grains via microfluidics and machine learning. IEEE Trans Biomed Eng 2021; 69:921-931. [PMID: 34478361 DOI: 10.1109/tbme.2021.3109384] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In aerobiological monitoring and agriculture there is a pressing need for accurate, label-free and automated analysis of pollen grains, in order to reduce the cost, workload and possible errors associated to traditional approaches. Methods: We propose a new multimodal approach that combines electrical sensing and optical imaging to classify pollen grains flowing in a microfluidic chip at a throughput of 150 grains per second. Electrical signals and synchronized optical images are processed by two independent machine learning-based classifiers, whose predictions are then combined to provide the final classification outcome. Results: The applicability of the method is demonstrated in a proof-of-concept classification experiment involving eight pollen classes from different taxa. The average balanced accuracy is 78.7 % for the electrical classifier, 76.7 % for the optical classifier and 84.2 % for the multimodal classifier. The accuracy is 82.8 % for the electrical classifier, 84.1 % for the optical classifier and 88.3 % for the multimodal classifier. Conclusion: The multimodal approach provides better classification results with respect to the analysis based on electrical or optical features alone. Significance: The proposed methodology paves the way for automated multimodal palynology. Moreover, it can be extended to other fields, such as diagnostics and cell therapy, where it could be used for label-free identification of cell populations in heterogeneous samples.
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Huang X, Torres-Castro K, Varhue W, Salahi A, Rasin A, Honrado C, Brown A, Guler J, Swami NS. Self-aligned sequential lateral field non-uniformities over channel depth for high throughput dielectrophoretic cell deflection. LAB ON A CHIP 2021; 21:835-843. [PMID: 33532812 PMCID: PMC8019514 DOI: 10.1039/d0lc01211d] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Dielectrophoresis (DEP) enables the separation of cells based on subtle subcellular phenotypic differences by controlling the frequency of the applied field. However, current electrode-based geometries extend over a limited depth of the sample channel, thereby reducing the throughput of the manipulated sample (sub-μL min-1 flow rates and <105 cells per mL). We present a flow through device with self-aligned sequential field non-uniformities extending laterally across the sample channel width (100 μm) that are created by metal patterned over the entire depth (50 μm) of the sample channel sidewall using a single lithography step. This enables single-cell streamlines to undergo progressive DEP deflection with minimal dependence on the cell starting position, its orientation versus the field and intercellular interactions. Phenotype-specific cell separation is validated (>μL min-1 flow and >106 cells per mL) using heterogeneous samples of healthy and glutaraldehyde-fixed red blood cells, with single-cell impedance cytometry showing that the DEP collected fractions are intact and exhibit electrical opacity differences consistent with their capacitance-based DEP crossover frequency. This geometry can address the vision of an "all electric" selective cell isolation and cytometry system for quantifying phenotypic heterogeneity of cellular systems.
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Affiliation(s)
- XuHai Huang
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA.
| | - Karina Torres-Castro
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA.
| | - Walter Varhue
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA.
| | - Armita Salahi
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA.
| | - Ahmed Rasin
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA.
| | - Carlos Honrado
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA.
| | - Audrey Brown
- Biology, University of Virginia, Charlottesville, USA
| | | | - Nathan S Swami
- Electrical & Computer Engineering, University of Virginia, Charlottesville, USA. and Chemistry, University of Virginia, Charlottesville, USA
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Ramirez-Murillo CJ, de Los Santos-Ramirez JM, Perez-Gonzalez VH. Toward low-voltage dielectrophoresis-based microfluidic systems: A review. Electrophoresis 2020; 42:565-587. [PMID: 33166414 DOI: 10.1002/elps.202000213] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 10/27/2020] [Accepted: 11/02/2020] [Indexed: 12/13/2022]
Abstract
Dielectrophoretically driven microfluidic devices have demonstrated great applicability in biomedical engineering, diagnostic medicine, and biological research. One of the potential fields of application for this technology is in point-of-care (POC) devices, ideally allowing for portable, fully integrated, easy to use, low-cost diagnostic platforms. Two main approaches exist to induce dielectrophoresis (DEP) on suspended particles, that is, electrode-based DEP and insulator-based DEP, each featuring different advantages and disadvantages. However, a shared concern lies in the input voltage used to generate the electric field necessary for DEP to take place. Therefore, input voltage can determine portability of a microfluidic device. This review outlines the recent advances in reducing stimulation voltage requirements in DEP-driven microfluidics.
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Salahi A, Varhue WB, Farmehini V, Hyler AR, Schmelz EM, Davalos RV, Swami NS. Self-aligned microfluidic contactless dielectrophoresis device fabricated by single-layer imprinting on cyclic olefin copolymer. Anal Bioanal Chem 2020; 412:3881-3889. [PMID: 32372273 DOI: 10.1007/s00216-020-02667-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Revised: 04/03/2020] [Accepted: 04/16/2020] [Indexed: 12/17/2022]
Abstract
The trapping and deflection of biological cells by dielectrophoresis (DEP) at field non-uniformities in a microfluidic device is often conducted in a contactless dielectrophoresis (cDEP) mode, wherein the electrode channel is in a different layer than the sample channel, so that field penetration through the interceding barrier causes DEP above critical cut-off frequencies. In this manner, through physical separation of the electrode and sample channels, it is possible to spatially modulate electric fields with no electrode-induced damage to biological cells in the sample channel. However, since this device requires interlayer alignment of the electrode to sample channel and needs to maintain a thin interceding barrier (~ 15 μm) over the entire length over which DEP is needed (~ 1 cm), variations in alignment and microstructure fidelity cause wide variations in cDEP trapping level and frequency response across devices. We present a strategy to eliminate interlayer alignment by fabricating self-aligned electrode and sample channels, simultaneously with the interceding barrier layer (14-μm width and 50-μm depth), using a single-layer imprint and bond process on cyclic olefin copolymer. Specifically, by designing support structures, we preserve fidelity of the high aspect ratio insulating posts in the sample channel and the interceding barrier between the sample and electrode channels over the entire device footprint (~ 1 cm). The device operation is validated based on impedance measurements to quantify field penetration through the interceding barrier and by DEP trapping measurements. The presented fabrication strategy can eventually improve cDEP device manufacturing protocols to enable more reproducible DEP performance. Graphical abstract.
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Affiliation(s)
- Armita Salahi
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA
| | - Walter B Varhue
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA
| | - Vahid Farmehini
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA
| | | | - Eva M Schmelz
- Department of Human Nutrition, Foods and Exercise, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Rafael V Davalos
- Department of Biomedical Engineering & Mechanics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Nathan S Swami
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA. .,Chemistry, University of Virginia, Charlottesville, VA, 22904, USA.
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Honrado C, McGrath JS, Reale R, Bisegna P, Swami NS, Caselli F. A neural network approach for real-time particle/cell characterization in microfluidic impedance cytometry. Anal Bioanal Chem 2020; 412:3835-3845. [PMID: 32189012 DOI: 10.1007/s00216-020-02497-9] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2019] [Revised: 01/30/2020] [Accepted: 02/06/2020] [Indexed: 11/26/2022]
Abstract
Microfluidic applications such as active particle sorting or selective enrichment require particle classification techniques that are capable of working in real time. In this paper, we explore the use of neural networks for fast label-free particle characterization during microfluidic impedance cytometry. A recurrent neural network is designed to process data from a novel impedance chip layout for enabling real-time multiparametric analysis of the measured impedance data streams. As demonstrated with both synthetic and experimental datasets, the trained network is able to characterize with good accuracy size, velocity, and cross-sectional position of beads, red blood cells, and yeasts, with a unitary prediction time of 0.4 ms. The proposed approach can be extended to other device designs and cell types for electrical parameter extraction. This combination of microfluidic impedance cytometry and machine learning can serve as a stepping stone to real-time single-cell analysis and sorting. Graphical Abstract.
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Affiliation(s)
- Carlos Honrado
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA
| | - John S McGrath
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA
| | - Riccardo Reale
- Department of Civil Engineering and Computer Science, University of Rome Tor Vergata, Via del Politecnico 1, 00133, Rome, Italy
| | - Paolo Bisegna
- Department of Civil Engineering and Computer Science, University of Rome Tor Vergata, Via del Politecnico 1, 00133, Rome, Italy
| | - Nathan S Swami
- Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, 22904, USA.
| | - Frederica Caselli
- Department of Civil Engineering and Computer Science, University of Rome Tor Vergata, Via del Politecnico 1, 00133, Rome, Italy.
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