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Meng C, Xu Y, Li N, Li Y, Ren L, Xia K. Incremental robust PCA for vessel segmentation in DSA sequences. Biomed Phys Eng Express 2022; 8. [PMID: 35439744 DOI: 10.1088/2057-1976/ac682b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 04/19/2022] [Indexed: 11/12/2022]
Abstract
In intervention surgery, DSA images provide a new way to observe the vessels and catheters inside the patient. Extracting coronary artery from the dynamic complex background fast improves the effectiveness directly in clinical interventional surgery. This article proposes an incremental robust principal component analysis (IRPCA) method to extract contrast-filled vessels from x-ray coronary angiograms. RPCA is a matrix decomposition method that decomposes a video matrix into foreground and background, commonly used to model complex backgrounds and extract target objects. IRPCA pre-optimizes an x-ray image sequence. When a new x-ray sequence is received, IRPCA optimizes it based on the pre-optimized matrix according to the strategy of minimizing the energy function to obtain the foreground matrix of the new sequence. Besides, based on the idea that the new x-ray sequence introduces new information to the pre-optimized matrix, we propose UIRPCA to improve the performence of IRPCA. Compared with the traditional RPCA method, IRPCA and UIRPCA save much time while ensuring that other indicators remain basically unchanged. The experiment results based on real data show the superiority of the proposed method over other RPCA algorithms.
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Affiliation(s)
- Cai Meng
- Image Processing Center, Beijing University of Aeronautics and Astronautics, Beijing 100191, People's Republic of China.,Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing 100083, People's Republic of China
| | - Yizhou Xu
- Image Processing Center, Beijing University of Aeronautics and Astronautics, Beijing 100191, People's Republic of China
| | - Ning Li
- Image Processing Center, Beijing University of Aeronautics and Astronautics, Beijing 100191, People's Republic of China
| | - Yanggang Li
- Image Processing Center, Beijing University of Aeronautics and Astronautics, Beijing 100191, People's Republic of China
| | - Longfei Ren
- Image Processing Center, Beijing University of Aeronautics and Astronautics, Beijing 100191, People's Republic of China
| | - Kun Xia
- Beijing Chaoyang hospital, Medical University of Capital Science, Beijing 100020, People's Republic of China
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Robust Registration of Medical Images in the Presence of Spatially-Varying Noise. ALGORITHMS 2022. [DOI: 10.3390/a15020058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Spatially-varying intensity noise is a common source of distortion in medical images and is often associated with reduced accuracy in medical image registration. In this paper, we propose two multi-resolution image registration algorithms based on Empirical Mode Decomposition (EMD) that are robust against additive spatially-varying noise. EMD is a multi-resolution tool that decomposes a signal into several principle patterns and residual components. Our first proposed algorithm (LR-EMD) is based on the registration of EMD feature maps from both floating and reference images in various resolutions. In the second algorithm (AFR-EMD), we first extract a single average feature map based on EMD and then use a simple hierarchical multi-resolution algorithm to register the average feature maps. We then showcase the superior performance of both algorithms in the registration of brain MRIs as well as retina images. For the registration of brain MR images, using mutual information as the similarity measure, both AFR-EMD and LR-EMD achieve a lower error rate in intensity (42% and 32%, respectively) and lower error rate in transformation (52% and 41%, respectively) compared to intensity-based hierarchical registration. Our results suggest that the two proposed algorithms offer robust registration solutions in the presence of spatially-varying noise.
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Yang L, Li Q, Song X, Cai W, Hou C, Xiong Z. An Improved Stereo Matching Algorithm for Vehicle Speed Measurement System Based on Spatial and Temporal Image Fusion. ENTROPY 2021; 23:e23070866. [PMID: 34356407 PMCID: PMC8305597 DOI: 10.3390/e23070866] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 07/04/2021] [Accepted: 07/05/2021] [Indexed: 11/20/2022]
Abstract
This paper proposes an improved stereo matching algorithm for vehicle speed measurement system based on spatial and temporal image fusion (STIF). Firstly, the matching point pairs in the license plate area with obviously abnormal distance to the camera are roughly removed according to the characteristic of license plate specification. Secondly, more mismatching point pairs are finely removed according to local neighborhood consistency constraint (LNCC). Thirdly, the optimum speed measurement point pairs are selected for successive stereo frame pairs by STIF of binocular stereo video, so that the 3D points corresponding to the matching point pairs for speed measurement in the successive stereo frame pairs are in the same position on the real vehicle, which can significantly improve the vehicle speed measurement accuracy. LNCC and STIF can be used not only for license plate, but also for vehicle logo, light, mirror etc. Experimental results demonstrate that the vehicle speed measurement system with the proposed LNCC+STIF stereo matching algorithm can significantly outperform the state-of-the-art system in accuracy.
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Affiliation(s)
- Lei Yang
- School of Electronic and Information, Zhongyuan University of Technology, Zhengzhou 450007, China; (Q.L.); (W.C.)
- Correspondence: (L.Y.); (X.S.)
| | - Qingyuan Li
- School of Electronic and Information, Zhongyuan University of Technology, Zhengzhou 450007, China; (Q.L.); (W.C.)
| | - Xiaowei Song
- School of Electronic and Information, Zhongyuan University of Technology, Zhengzhou 450007, China; (Q.L.); (W.C.)
- Dongjing Avenue Campus, Kaifeng University, Kaifeng 475004, China
- Correspondence: (L.Y.); (X.S.)
| | - Wenjing Cai
- School of Electronic and Information, Zhongyuan University of Technology, Zhengzhou 450007, China; (Q.L.); (W.C.)
| | - Chunping Hou
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China;
| | - Zixiang Xiong
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA;
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Shah KD, Shackleford JA, Kandasamy N, Sharp GC. A generalized framework for analytic regularization of uniform cubic B-spline displacement fields. Biomed Phys Eng Express 2021; 7. [PMID: 33878749 DOI: 10.1088/2057-1976/abf9e6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 04/20/2021] [Indexed: 11/11/2022]
Abstract
Image registration is an inherently ill-posed problem that lacks the constraints needed for a unique mapping between voxels of the two images being registered. As such, one must regularize the registration to achieve physically meaningful transforms. The regularization penalty is usually a function of derivatives of the displacement-vector field and can be calculated either analytically or numerically. The numerical approach, however, is computationally expensive depending on the image size, and therefore a computationally efficient analytical framework has been developed. Using cubic B-splines as the registration transform, we develop a generalized mathematical framework that supports five distinct regularizers: diffusion, curvature, linear elastic, third-order, and total displacement. We validate our approach by comparing each with its numerical counterpart in terms of accuracy. We also provide benchmarking results showing that the analytic solutions run significantly faster-up to two orders of magnitude-than finite differencing based numerical implementations.
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Affiliation(s)
- Keyur D Shah
- Electrical and Computer Engineering Department, Drexel University, Philadelphia, PA 19104, United States of America
| | - James A Shackleford
- Electrical and Computer Engineering Department, Drexel University, Philadelphia, PA 19104, United States of America
| | - Nagarajan Kandasamy
- Electrical and Computer Engineering Department, Drexel University, Philadelphia, PA 19104, United States of America
| | - Gregory C Sharp
- Department of Radiation Oncology, Massachusetts General Hospital, Boston, MA 02114, United States of America
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Moldovanu S, Toporaș LP, Biswas A, Moraru L. Combining Sparse and Dense Features to Improve Multi-Modal Registration for Brain DTI Images. ENTROPY (BASEL, SWITZERLAND) 2020; 22:E1299. [PMID: 33287067 PMCID: PMC7711905 DOI: 10.3390/e22111299] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Revised: 11/09/2020] [Accepted: 11/12/2020] [Indexed: 12/13/2022]
Abstract
A new solution to overcome the constraints of multimodality medical intra-subject image registration is proposed, using the mutual information (MI) of image histogram-oriented gradients as a new matching criterion. We present a rigid, multi-modal image registration algorithm based on linear transformation and oriented gradients for the alignment of T2-weighted (T2w) images (as a fixed reference) and diffusion tensor imaging (DTI) (b-values of 500 and 1250 s/mm2) as floating images of three patients to compensate for the motion during the acquisition process. Diffusion MRI is very sensitive to motion, especially when the intensity and duration of the gradient pulses (characterized by the b-value) increases. The proposed method relies on the whole brain surface and addresses the variability of anatomical features into an image stack. The sparse features refer to corners detected using the Harris corner detector operator, while dense features use all image pixels through the image histogram of oriented gradients (HOG) as a measure of the degree of statistical dependence between a pair of registered images. HOG as a dense feature is focused on the structure and extracts the oriented gradient image in the x and y directions. MI is used as an objective function for the optimization process. The entropy functions and joint entropy function are determined using the HOGs data. To determine the best image transformation, the fiducial registration error (FRE) measure is used. We compare the results against the MI-based intensities results computed using a statistical intensity relationship between corresponding pixels in source and target images. Our approach, which is devoted to the whole brain, shows improved registration accuracy, robustness, and computational cost compared with the registration algorithms, which use anatomical features or regions of interest areas with specific neuroanatomy. Despite the supplementary HOG computation task, the computation time is comparable for MI-based intensities and MI-based HOG methods.
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Affiliation(s)
- Simona Moldovanu
- Department of Computer Science and Information Technology, Faculty of Automation, Computers, Electrical Engineering and Electronics, Dunarea de Jos University of Galati, Galati 47 Domneasca Str., 800008 Galati, Romania;
- The Modelling & Simulation Laboratory, Dunarea de Jos University of Galati, Galati 47 Domneasca Str., 800008 Galati, Romania;
| | - Lenuta Pană Toporaș
- The Modelling & Simulation Laboratory, Dunarea de Jos University of Galati, Galati 47 Domneasca Str., 800008 Galati, Romania;
- Department of Chemistry, Physics & Environment, Faculty of Sciences and Environment, Dunarea de Jos University of Galati, 47 Domneasca Str., 800008 Galati, Romania
| | - Anjan Biswas
- Department of Physics, Chemistry and Mathematics, Alabama A&M University, Normal, AL 35762-4900, USA;
- Department of Mathematics, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Department of Applied Mathematics, National Research Nuclear University, 31 Kashirskoe Hwy, 115409 Moscow, Russia
| | - Luminita Moraru
- The Modelling & Simulation Laboratory, Dunarea de Jos University of Galati, Galati 47 Domneasca Str., 800008 Galati, Romania;
- Department of Chemistry, Physics & Environment, Faculty of Sciences and Environment, Dunarea de Jos University of Galati, 47 Domneasca Str., 800008 Galati, Romania
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Wen Y, Xu C, Lu Y, Li Q, Cai H, He L. Gabor Feature Based LogDemons with Inertial Constraint for Nonrigid Image Registration. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2020; PP:8238-8250. [PMID: 32755862 DOI: 10.1109/tip.2020.3013169] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Nonrigid image registration plays an important role in the field of computer vision and medical application. The methods based on Demons algorithm for image registration usually use intensity difference as similarity criteria. However, intensity based methods can not preserve image texture details well and are limited by local minima. In order to solve these problems, we propose a Gabor feature based LogDemons registration method in this paper, called GFDemons. We extract Gabor features of the registered images to construct feature similarity metric since Gabor filters are suitable to extract image texture information. Furthermore, because of the weak gradients in some image regions, the update fields are too small to transform the moving image to the fixed image correctly. In order to compensate this deficiency, we propose an inertial constraint strategy based on GFDemons, named IGFDemons, using the previous update fields to provide guided information for the current update field. The inertial constraint strategy can further improve the performance of the proposed method in terms of accuracy and convergence. We conduct experiments on three different types of images and the results demonstrate that the proposed methods achieve better performance than some popular methods.
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Xia S, Zhu H, Liu X, Gong M, Huang X, Xu L, Zhang H, Guo J. Vessel Segmentation of X-Ray Coronary Angiographic Image Sequence. IEEE Trans Biomed Eng 2019; 67:1338-1348. [PMID: 31494537 DOI: 10.1109/tbme.2019.2936460] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
OBJECTIVE To facilitate the analysis and diagnosis of X-ray coronary angiography in interventional surgery, it is necessary to extract vessel from X-ray coronary angiography. However, vessel images of angiography suffer from low quality with large artefacts, which challenges the existing vascular technology. METHODS In this paper, we propose a ávessel framework to detect vessels and segment vessels in angiographic vessel data. In this framework, we develop a new matrix decomposition model with gradient sparse in the tensor representation. Then, the energy function with the input of the hierarchical vessel is used in vessel detection and vessel segmentation. RESULTS Through experiments conducted on angiographic data, we have demonstrated the good performance of the proposed method in removing background structure. CONCLUSION We evaluated our method for vessel detection and segmentation in different clinical settings, including LAO/RAO with cranial and caudal angulation, and showed its competitive results compared with eight state-of-the-art methods in terms of extensive qualitative and quantitative evaluation. SIGNIFICANCE Our method can remove a large number of background artefacts and obtain a better vascular structure, which has contributed to the clinical diagnosis of coronary artery diseases.
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Ma J, Jiang X, Jiang J, Guo X. Robust Feature Matching Using Spatial Clustering with Heavy Outliers. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2019; 29:736-746. [PMID: 31449018 DOI: 10.1109/tip.2019.2934572] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
This paper focuses on removing mismatches from given putative feature matches created typically based on descriptor similarity. To achieve this goal, existing attempts usually involve estimating the image transformation under a geometrical constraint, where a pre-defined transformation model is demanded. This severely limits the applicability, as the transformation could vary with different data and is complex and hard to model in many real-world tasks. From a novel perspective, this paper casts the feature matching into a spatial clustering problem with outliers. The main idea is to adaptively cluster the putative matches into several motion consistent clusters together with an outlier/mismatch cluster. To implement the spatial clustering, we customize the classic density based spatial clustering method of applications with noise (DBSCAN) in the context of feature matching, which enables our approach to achieve quasi-linear time complexity. We also design an iterative clustering strategy to promote the matching performance in case of severely degraded data. Extensive experiments on several datasets involving different types of image transformations demonstrate the superiority of our approach over state-of-the-art alternatives. Our approach is also applied to near-duplicate image retrieval and co-segmentation and achieves promising performance.
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Bashiri FS, Baghaie A, Rostami R, Yu Z, D’Souza RM. Multi-Modal Medical Image Registration with Full or Partial Data: A Manifold Learning Approach. J Imaging 2018; 5:5. [PMID: 34470183 PMCID: PMC8320870 DOI: 10.3390/jimaging5010005] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 12/23/2018] [Accepted: 12/25/2018] [Indexed: 11/16/2022] Open
Abstract
Multi-modal image registration is the primary step in integrating information stored in two or more images, which are captured using multiple imaging modalities. In addition to intensity variations and structural differences between images, they may have partial or full overlap, which adds an extra hurdle to the success of registration process. In this contribution, we propose a multi-modal to mono-modal transformation method that facilitates direct application of well-founded mono-modal registration methods in order to obtain accurate alignment of multi-modal images in both cases, with complete (full) and incomplete (partial) overlap. The proposed transformation facilitates recovering strong scales, rotations, and translations. We explain the method thoroughly and discuss the choice of parameters. For evaluation purposes, the effectiveness of the proposed method is examined and compared with widely used information theory-based techniques using simulated and clinical human brain images with full data. Using RIRE dataset, mean absolute error of 1.37, 1.00, and 1.41 mm are obtained for registering CT images with PD-, T1-, and T2-MRIs, respectively. In the end, we empirically investigate the efficacy of the proposed transformation in registering multi-modal partially overlapped images.
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Affiliation(s)
- Fereshteh S. Bashiri
- Department of Electrical Engineering, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA
| | - Ahmadreza Baghaie
- Department of Electrical Engineering, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA
| | - Reihaneh Rostami
- Department of Computer Science, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA
| | - Zeyun Yu
- Department of Electrical Engineering, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA
- Department of Computer Science, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA
| | - Roshan M. D’Souza
- Department of Mechanical Engineering, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA
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