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For: Baardsnes J, Jelokhani-Niaraki M, Kondejewski LH, Kuiper MJ, Kay CM, Hodges RS, Davies PL. Antifreeze protein from shorthorn sculpin: identification of the ice-binding surface. Protein Sci 2001;10:2566-76. [PMID: 11714925 PMCID: PMC2374026 DOI: 10.1110/ps.ps.26501] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Number Cited by Other Article(s)
1
Graham LA, Davies PL. Fish antifreeze protein origin in sculpins by frameshifting within a duplicated housekeeping gene. FEBS J 2024. [PMID: 38923815 DOI: 10.1111/febs.17205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 03/25/2024] [Accepted: 06/07/2024] [Indexed: 06/28/2024]
2
Rives N, Lamba V, Christina Cheng CH, Zhuang X. Diverse origins of near-identical antifreeze proteins in unrelated fish lineages provide insights into evolutionary mechanisms of new gene birth and protein sequence convergence. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.12.584730. [PMID: 38559027 PMCID: PMC10980009 DOI: 10.1101/2024.03.12.584730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
3
Cui M, Li J, Li J, Wang F, Li X, Yu J, Huang Y, Liu Y. Screening and characterization of a novel antifreeze peptide from silver carp muscle hydrolysate. Food Chem 2023;403:134480. [DOI: 10.1016/j.foodchem.2022.134480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 09/28/2022] [Accepted: 09/28/2022] [Indexed: 11/28/2022]
4
Water-organizing motif continuity is critical for potent ice nucleation protein activity. Nat Commun 2022;13:5019. [PMID: 36028506 PMCID: PMC9418140 DOI: 10.1038/s41467-022-32469-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 07/29/2022] [Indexed: 12/02/2022]  Open
5
Antifreeze Proteins: Novel Applications and Navigation towards Their Clinical Application in Cryobanking. Int J Mol Sci 2022;23:ijms23052639. [PMID: 35269780 PMCID: PMC8910022 DOI: 10.3390/ijms23052639] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 02/16/2022] [Accepted: 02/25/2022] [Indexed: 12/04/2022]  Open
6
Baskaran A, Kaari M, Venugopal G, Manikkam R, Joseph J, Bhaskar PV. Anti freeze proteins (Afp): Properties, sources and applications - A review. Int J Biol Macromol 2021;189:292-305. [PMID: 34419548 DOI: 10.1016/j.ijbiomac.2021.08.105] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 08/11/2021] [Accepted: 08/12/2021] [Indexed: 11/17/2022]
7
Kozuch DJ, Stillinger FH, Debenedetti PG. Genetic Algorithm Approach for the Optimization of Protein Antifreeze Activity Using Molecular Simulations. J Chem Theory Comput 2020;16:7866-7873. [PMID: 33201707 DOI: 10.1021/acs.jctc.0c00773] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
8
Hanson JM, Courtenay SC. Data Recovery from Old Filing Cabinets: Seasonal Diets of the Most Common Demersal Fishes in the Miramichi River Estuary (Atlantic Canada), 1991–1993. Northeast Nat (Steuben) 2020. [DOI: 10.1656/045.027.0302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
9
Lee H. Effects of hydrophobic and hydrogen-bond interactions on the binding affinity of antifreeze proteins to specific ice planes. J Mol Graph Model 2018;87:48-55. [PMID: 30502671 DOI: 10.1016/j.jmgm.2018.11.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2018] [Revised: 11/17/2018] [Accepted: 11/19/2018] [Indexed: 11/26/2022]
10
Wellig S, Hamm P. Solvation Layer of Antifreeze Proteins Analyzed with a Markov State Model. J Phys Chem B 2018;122:11014-11022. [PMID: 29889528 DOI: 10.1021/acs.jpcb.8b04491] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
11
Stevens CA, Semrau J, Chiriac D, Litschko M, Campbell RL, Langelaan DN, Smith SP, Davies PL, Allingham JS. Peptide backbone circularization enhances antifreeze protein thermostability. Protein Sci 2017;26:1932-1941. [PMID: 28691252 DOI: 10.1002/pro.3228] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2017] [Revised: 06/22/2017] [Accepted: 07/03/2017] [Indexed: 11/09/2022]
12
Blocking rapid ice crystal growth through nonbasal plane adsorption of antifreeze proteins. Proc Natl Acad Sci U S A 2016;113:3740-5. [PMID: 26936953 DOI: 10.1073/pnas.1524109113] [Citation(s) in RCA: 110] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Davies PL. Ice-binding proteins: a remarkable diversity of structures for stopping and starting ice growth. Trends Biochem Sci 2014;39:548-55. [DOI: 10.1016/j.tibs.2014.09.005] [Citation(s) in RCA: 268] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Revised: 09/24/2014] [Accepted: 09/25/2014] [Indexed: 12/01/2022]
14
Graham LA, Hobbs RS, Fletcher GL, Davies PL. Helical antifreeze proteins have independently evolved in fishes on four occasions. PLoS One 2013;8:e81285. [PMID: 24324684 PMCID: PMC3855684 DOI: 10.1371/journal.pone.0081285] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Accepted: 10/21/2013] [Indexed: 12/25/2022]  Open
15
Haridas V, Naik S. Natural macromolecular antifreeze agents to synthetic antifreeze agents. RSC Adv 2013. [DOI: 10.1039/c3ra00081h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
16
Middleton AJ, Marshall CB, Faucher F, Bar-Dolev M, Braslavsky I, Campbell RL, Walker VK, Davies PL. Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site. J Mol Biol 2012;416:713-24. [PMID: 22306740 DOI: 10.1016/j.jmb.2012.01.032] [Citation(s) in RCA: 93] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2011] [Accepted: 01/18/2012] [Indexed: 11/16/2022]
17
Hobbs RS, Shears MA, Graham LA, Davies PL, Fletcher GL. Isolation and characterization of type I antifreeze proteins from cunner, Tautogolabrus adspersus, order Perciformes. FEBS J 2011;278:3699-710. [DOI: 10.1111/j.1742-4658.2011.08288.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
18
Bayer-Giraldi M, Weikusat I, Besir H, Dieckmann G. Characterization of an antifreeze protein from the polar diatom Fragilariopsis cylindrus and its relevance in sea ice. Cryobiology 2011;63:210-9. [PMID: 21906587 DOI: 10.1016/j.cryobiol.2011.08.006] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2011] [Revised: 08/12/2011] [Accepted: 08/15/2011] [Indexed: 11/16/2022]
19
The triplet puzzle of homologies in receptor heteromers exists also in other types of protein-protein interactions. J Mol Neurosci 2011;44:173-7. [PMID: 21416272 DOI: 10.1007/s12031-011-9511-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2010] [Accepted: 03/03/2011] [Indexed: 11/26/2022]
20
Patel SN, Graether SP. Structures and ice-binding faces of the alanine-rich type I antifreeze proteins. Biochem Cell Biol 2010;88:223-9. [PMID: 20453925 DOI: 10.1139/o09-183] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
21
Mok YF, Lin FH, Graham LA, Celik Y, Braslavsky I, Davies PL. Structural Basis for the Superior Activity of the Large Isoform of Snow Flea Antifreeze Protein. Biochemistry 2010;49:2593-603. [DOI: 10.1021/bi901929n] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
22
Tarakanov AO, Fuxe KG. Triplet Puzzle: Homologies of Receptor Heteromers. J Mol Neurosci 2009;41:294-303. [DOI: 10.1007/s12031-009-9313-5] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2009] [Accepted: 11/12/2009] [Indexed: 11/27/2022]
23
Takamichi M, Nishimiya Y, Miura A, Tsuda S. Fully active QAE isoform confers thermal hysteresis activity on a defective SP isoform of type III antifreeze protein. FEBS J 2009;276:1471-9. [PMID: 19187223 DOI: 10.1111/j.1742-4658.2009.06887.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
24
Petit-Haertlein I, Blakeley MP, Howard E, Hazemann I, Mitschler A, Haertlein M, Podjarny A. Perdeuteration, purification, crystallization and preliminary neutron diffraction of an ocean pout type III antifreeze protein. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009;65:406-9. [PMID: 19342793 PMCID: PMC2664773 DOI: 10.1107/s1744309109008574] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2009] [Accepted: 03/09/2009] [Indexed: 11/10/2022]
25
Kristiansen E, Pedersen SA, Zachariassen KE. Salt-induced enhancement of antifreeze protein activity: A salting-out effect. Cryobiology 2008;57:122-9. [DOI: 10.1016/j.cryobiol.2008.07.001] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2008] [Revised: 05/20/2008] [Accepted: 07/05/2008] [Indexed: 10/21/2022]
26
Nishimiya Y, Kondo H, Takamichi M, Sugimoto H, Suzuki M, Miura A, Tsuda S. Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus. J Mol Biol 2008;382:734-46. [PMID: 18674542 DOI: 10.1016/j.jmb.2008.07.042] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2008] [Revised: 07/13/2008] [Accepted: 07/16/2008] [Indexed: 10/21/2022]
27
A Ca2+-dependent bacterial antifreeze protein domain has a novel β-helical ice-binding fold. Biochem J 2008;411:171-80. [DOI: 10.1042/bj20071372] [Citation(s) in RCA: 113] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
28
Жмакин А. Физические основы криобиологии. ACTA ACUST UNITED AC 2008. [DOI: 10.3367/ufnr.0178.200803b.0243] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
29
Lin FH, Graham LA, Campbell RL, Davies PL. Structural modeling of snow flea antifreeze protein. Biophys J 2006;92:1717-23. [PMID: 17158562 PMCID: PMC1796811 DOI: 10.1529/biophysj.106.093435] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
30
Scotter AJ, Marshall CB, Graham LA, Gilbert JA, Garnham CP, Davies PL. The basis for hyperactivity of antifreeze proteins. Cryobiology 2006;53:229-39. [PMID: 16887111 DOI: 10.1016/j.cryobiol.2006.06.006] [Citation(s) in RCA: 197] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2006] [Revised: 06/09/2006] [Accepted: 06/19/2006] [Indexed: 11/27/2022]
31
Nishimiya Y, Kondo H, Yasui M, Sugimoto H, Noro N, Sato R, Suzuki M, Miura A, Tsuda S. Crystallization and preliminary X-ray crystallographic analysis of Ca2+-independent and Ca2+-dependent species of the type II antifreeze protein. Acta Crystallogr Sect F Struct Biol Cryst Commun 2006;62:538-41. [PMID: 16754975 PMCID: PMC2243089 DOI: 10.1107/s1744309106015570] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2006] [Accepted: 04/28/2006] [Indexed: 11/10/2022]
32
Prabhu N, Sharp K. Protein-solvent interactions. Chem Rev 2006;106:1616-23. [PMID: 16683747 PMCID: PMC2584800 DOI: 10.1021/cr040437f] [Citation(s) in RCA: 125] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
33
Evans RP, Fletcher GL. Type I antifreeze proteins expressed in snailfish skin are identical to their plasma counterparts. FEBS J 2005;272:5327-36. [PMID: 16218962 DOI: 10.1111/j.1742-4658.2005.04929.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
34
Kristiansen E, Zachariassen KE. The mechanism by which fish antifreeze proteins cause thermal hysteresis. Cryobiology 2005;51:262-80. [PMID: 16140290 DOI: 10.1016/j.cryobiol.2005.07.007] [Citation(s) in RCA: 124] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2004] [Revised: 08/19/2004] [Accepted: 07/18/2005] [Indexed: 10/25/2022]
35
Antifreeze Proteins and Organismal Freezing Avoidance in Polar Fishes. FISH PHYSIOLOGY 2005. [DOI: 10.1016/s1546-5098(04)22004-0] [Citation(s) in RCA: 107] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
36
Baardsnes J, Davies PL. Contribution of hydrophobic residues to ice binding by fish type III antifreeze protein. BIOCHIMICA ET BIOPHYSICA ACTA 2002;1601:49-54. [PMID: 12429502 DOI: 10.1016/s1570-9639(02)00431-4] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
37
Marshall CB, Daley ME, Graham LA, Sykes BD, Davies PL. Identification of the ice-binding face of antifreeze protein from Tenebrio molitor. FEBS Lett 2002;529:261-7. [PMID: 12372611 DOI: 10.1016/s0014-5793(02)03355-0] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
38
Smallwood M, Bowles DJ. Plants in a cold climate. Philos Trans R Soc Lond B Biol Sci 2002;357:831-47. [PMID: 12171647 PMCID: PMC1692998 DOI: 10.1098/rstb.2002.1073] [Citation(s) in RCA: 126] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
39
Davies PL, Baardsnes J, Kuiper MJ, Walker VK. Structure and function of antifreeze proteins. Philos Trans R Soc Lond B Biol Sci 2002;357:927-35. [PMID: 12171656 PMCID: PMC1692999 DOI: 10.1098/rstb.2002.1081] [Citation(s) in RCA: 208] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
40
Fairley K, Westman BJ, Pham LH, Haymet ADJ, Harding MM, Mackay JP. Type I shorthorn sculpin antifreeze protein: recombinant synthesis, solution conformation, and ice growth inhibition studies. J Biol Chem 2002;277:24073-80. [PMID: 11940576 DOI: 10.1074/jbc.m200307200] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
41
Leinala EK, Davies PL, Jia Z. Crystal structure of beta-helical antifreeze protein points to a general ice binding model. Structure 2002;10:619-27. [PMID: 12015145 DOI: 10.1016/s0969-2126(02)00745-1] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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