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Riddell EA, Burger IJ, Tyner-Swanson TL, Biggerstaff J, Muñoz MM, Levy O, Porter CK. Parameterizing mechanistic niche models in biophysical ecology: a review of empirical approaches. J Exp Biol 2023; 226:jeb245543. [PMID: 37955347 DOI: 10.1242/jeb.245543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2023]
Abstract
Mechanistic niche models are computational tools developed using biophysical principles to address grand challenges in ecology and evolution, such as the mechanisms that shape the fundamental niche and the adaptive significance of traits. Here, we review the empirical basis of mechanistic niche models in biophysical ecology, which are used to answer a broad array of questions in ecology, evolution and global change biology. We describe the experiments and observations that are frequently used to parameterize these models and how these empirical data are then incorporated into mechanistic niche models to predict performance, growth, survival and reproduction. We focus on the physiological, behavioral and morphological traits that are frequently measured and then integrated into these models. We also review the empirical approaches used to incorporate evolutionary processes, phenotypic plasticity and biotic interactions. We discuss the importance of validation experiments and observations in verifying underlying assumptions and complex processes. Despite the reliance of mechanistic niche models on biophysical theory, empirical data have and will continue to play an essential role in their development and implementation.
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Affiliation(s)
- Eric A Riddell
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| | - Isabella J Burger
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| | - Tamara L Tyner-Swanson
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA
| | - Justin Biggerstaff
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA
| | - Martha M Muñoz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, USA
| | - Ofir Levy
- Faculty of Life Sciences, School of Zoology, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Cody K Porter
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA
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Porter WP, Bertz AE, Mathewson PD, Solorzano LC, Dudley PN, Bonazza R, Gebremedhin KG. Climate Spaces and Cliffs: A Novel Bovine Thermodynamic and Mass Balances Model. Animals (Basel) 2023; 13:3043. [PMID: 37835649 PMCID: PMC10572002 DOI: 10.3390/ani13193043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 09/15/2023] [Accepted: 09/18/2023] [Indexed: 10/15/2023] Open
Abstract
The effects of climate change on animals are typically viewed in terms of survivability and wellbeing. In this study, we broaden that purview to include climate impacts on reproductive capability. There are not only climate spaces for daily function, but climate cliffs that represent reproductive failures in the face of climate warming. This alternative focus suggests that climate warming challenges may be more immediate and profound than initially imagined. This research describes a state-of-the-art mechanistic model, Dairy Niche Mapper (DNM), and independent validation tests. Where test data are absent, the calculated results are consistent with expected responses. Simulations of metabolic chamber conditions reveal the local steady-state impacts of climate and animal variables on milk production capacity, metabolic rate, food consumption and water needs. Simulations of a temperature humidity index (THI) show strengths and limitations of that approach. Broader time- and spatial-scale calculations applied in the western and eastern halves of the northern hemisphere identify current and future monthly latitudinal climate change impacts on milk production potential, feed and water needs in dairy cows of different sizes. Dairy Niche Mapper (DNM) was developed from a broadly tested mechanistic microclimate-animal model, Niche Mapper (NM). DNM provides an improved quantitative understanding of the complex nonlinear interactions of climate variation and dairy bovine properties' effects on current and future milk production, feed and water needs for grazing and confinement dairy operations. DNM outputs include feasible activity times, milk production and water and feed needs of different-sized Holstein cows on high-grain (confinement feeding) versus high-forage (grazing feeding) diets at three arbitrary north latitudes, 12°, 30° and 60°, for North and Central America and for Asia. These three latitudes encompass current northern hemisphere bovine production environments and possible future production locations. The greatest impacts of climate change will be in the low elevations in tropical and subtropical regions. Global regions above 30° and below 60° latitude with reliable rainfall will be least affected by current projected levels of climate change. This work provides the basis for computational animal design for guiding agricultural development via breeding programs, genetic engineering, management options including siting or the manipulation of other relevant environmental and animal variables.
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Affiliation(s)
- Warren P. Porter
- Department of Integrative Biology, University of Wisconsin, Madison, WI 53706, USA; (A.E.B.); (P.D.M.)
| | - Alexa E. Bertz
- Department of Integrative Biology, University of Wisconsin, Madison, WI 53706, USA; (A.E.B.); (P.D.M.)
| | - Paul D. Mathewson
- Department of Integrative Biology, University of Wisconsin, Madison, WI 53706, USA; (A.E.B.); (P.D.M.)
| | - Luis C. Solorzano
- Adjunct Faculty, Department of Animal Science, University of Puerto Rico-Mayagüez, Mayagüez, PR 00680, USA;
| | - Peter N. Dudley
- Fisheries Collaborative Program, University of California, Santa Cruz, CA 95064, USA;
| | - Riccardo Bonazza
- Department of Mechanical Engineering, University of Wisconsin, Madison, WI 53706, USA;
| | - Kifle G. Gebremedhin
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY 14853, USA;
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Fur removal promotes an earlier expression of involution-related genes in mammary gland of lactating mice. J Comp Physiol B 2023; 193:171-192. [PMID: 36650338 PMCID: PMC9992052 DOI: 10.1007/s00360-023-01474-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 12/31/2022] [Accepted: 01/06/2023] [Indexed: 01/19/2023]
Abstract
Peak lactation occurs when milk production is at its highest. The factors limiting peak lactation performance have been subject of intense debate. Milk production at peak lactation appears limited by the capacity of lactating females to dissipate body heat generated as a by-product of processing food and producing milk. As a result, manipulations that enhance capacity to dissipate body heat (such as fur removal) increase peak milk production. We investigated the potential correlates of shaving-induced increases in peak milk production in laboratory mice. By transcriptomic profiling of the mammary gland, we searched for the mechanisms underlying experimentally increased milk production and its consequences for mother-young conflict over weaning, manifested by advanced or delayed involution of mammary gland. We demonstrated that shaving-induced increases in milk production were paradoxically linked to reduced expression of some milk synthesis-related genes. Moreover, the mammary glands of shaved mice had a gene expression profile indicative of earlier involution relative to unshaved mice. Once provided with enhanced capacity to dissipate body heat, shaved mice were likely to rear their young to independence faster than unshaved mothers.
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Denryter K, Fischer JK. Mitigating anthropogenic barriers to facilitate distributional shifts helps reduce vulnerability of a large herbivore to climate change. Anim Conserv 2022. [DOI: 10.1111/acv.12776] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- K. Denryter
- Wildlife Branch California Department of Fish and Wildlife West Sacramento California USA
| | - J. K. Fischer
- Wildlife Branch California Department of Fish and Wildlife West Sacramento California USA
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Campbell-Staton SC, Walker RH, Rogers SA, De León J, Landecker H, Porter W, Mathewson PD, Long RA. Physiological costs of undocumented human migration across the southern United States border. Science 2021; 374:1496-1500. [PMID: 34914507 DOI: 10.1126/science.abh1924] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
[Figure: see text].
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Affiliation(s)
- Shane C Campbell-Staton
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA.,Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA.,Institute for Society and Genetics, University of California, Los Angeles, CA, USA
| | - Reena H Walker
- Department of Fish and Wildlife Sciences, University of Idaho, Moscow, ID, USA
| | - Savannah A Rogers
- Bioinformatics and Computational Biology, University of Idaho, Moscow, ID, USA
| | - Jason De León
- Department of Anthropology and Chicana, Chicano, and Central American Studies, University of California, Los Angeles, CA, USA
| | - Hannah Landecker
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA.,Sociology Department, University of California, Los Angeles, CA, USA
| | - Warren Porter
- Department of Integrative Biology, University of Wisconsin, Madison, WI, USA
| | - Paul D Mathewson
- Department of Integrative Biology, University of Wisconsin, Madison, WI, USA
| | - Ryan A Long
- Department of Fish and Wildlife Sciences, University of Idaho, Moscow, ID, USA
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Verzuh TL, Hall LE, Cufaude T, Knox L, Class C, Monteith KL. Behavioural flexibility in a heat-sensitive endotherm: the role of bed sites as thermal refuges. Anim Behav 2021. [DOI: 10.1016/j.anbehav.2021.05.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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