Horn growth variation and hunting selection of the Alpine ibex

Demographic and evolutionary consequences of hunting of wild birds

Hunting has a long tradition in human evolutionary history and remains a common leisure activity or an important source of food. Herein, we first briefly review the literature on the demographic consequences of hunting and associated analytical methods. We then address the question of potential selective hunting and its possible genetic/evolutionary consequences. Birds have historically been popular models for demographic studies, and the huge amount of census and ringing data accumulated over the last century has paved the way for research about the demographic effects of harvesting. By contrast, the literature on the evolutionary consequences of harvesting is dominated by studies on mammals (especially ungulates) and fish. In these taxa, individuals selected for harvest often have particular traits such as large body size or extravagant secondary sexual characters (e.g. antlers, horns, etc.). Our review shows that targeting individuals according to such genetically heritable traits can exert strong selective pressures and alter the evolutionary trajectory of populations for these or correlated traits. Studies focusing on the evolutionary consequences of hunting in birds are extremely rare, likely because birds within populations appear much more similar, and do not display individual differences to the same extent as many mammals and fishes. Nevertheless, even without conscious choice by hunters, there remains the potential for selection through hunting in birds, for example by genetically inherited traits such as personality or pace-of-life. We emphasise that because so many bird species experience high hunting pressure, the possible selective effect of harvest in birds and its evolutionary consequences deserves far more attention, and that hunting may be one major driver of bird evolutionary trajectories that should be carefully considered in wildlife management schemes.

Genetic diversity, tissue-specific expression, and functional analysis of the ATP7A gene in sheep

In humans, variation of the ATP7A gene may cause cranial exostosis, which is similar to "human horn," but the function of the ATP7A gene in sheep is still unknown. Tissue expression patterns and potential functional loci analysis of the ATP7A gene could help understand its function in sheep horn. In this study, we first identified tissue, sex, breed, and species-specific expression of the ATP7A gene in sheep based on the RNA-sequencing (RNA-seq) data. Second, the potential functional sites of the ATP7A gene were analyzed by using the whole genome sequencing (WGS) data of 99 sheep from 10 breeds. Last, the allele-specific expression of the ATP7A gene was explored. Our result showed the ATP7A gene has significantly higher expression in the big horn than in the small horn, and the ATP7A gene has high expression in the horn and skin, suggesting that this gene may be related to the horn. The PCA results show that the region around the ATP7A can distinguish horned and hornless groups to some extent, further indicating that the ATP7A may be related to horns. When compared with other species, we find seven ruminate specific amino acid sites of the ATP7A protein, which can be important to the ruminate horn. By analyzing WGS, we found 6 SNP sites with significant differences in frequency in horned and hornless populations, and most of these variants are present in the intron. But we still find some potential functional sites, including three missenses, three synonymous mutations, and four Indels. Finally, by combining the RNA-seq and WGS functional loci results, we find three mutations that showed allele-specific expression between big and small horns. This study shows that the ATP7A gene in sheep may be related to horn size, and several potential functional sites we identified here can be useful molecular markers for sheep horn breeding.

Detecting parallel polygenic adaptation to novel evolutionary pressure in wild populations: a case study in Atlantic cod (Gadus morhua)

Populations can adapt to novel selection pressures through dramatic frequency changes in a few genes of large effect or subtle shifts in many genes of small effect. The latter (polygenic adaptation) is expected to be the primary mode of evolution for many life-history traits but tends to be more difficult to detect than changes in genes of large effect. Atlantic cod (Gadus morhua) were subjected to intense fishing pressure over the twentieth century, leading to abundance crashes and a phenotypic shift toward earlier maturation across many populations. Here, we use spatially replicated temporal genomic data to test for a shared polygenic adaptive response to fishing using methods previously applied to evolve-and-resequence experiments. Cod populations on either side of the Atlantic show covariance in allele frequency change across the genome that are characteristic of recent polygenic adaptation. Using simulations, we demonstrate that the degree of covariance in allele frequency change observed in cod is unlikely to be explained by neutral processes or background selection. As human pressures on wild populations continue to increase, understanding and attributing modes of adaptation using methods similar to those demonstrated here will be important in identifying the capacity for adaptive responses and evolutionary rescue. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.

Effects of hunting pressure and timing of harvest on bighorn sheep horn size

Trophy hunting can affect weapon size of wild animals through both demographic and evolutionary changes. In bighorn sheep (Ovis canadensis Shaw, 1804), intense harvest of young males with fast-growing horns may have partly driven long-term decreases in horn size. These selective effects could be dampened if migrants from protected areas, not subject to artificial selection, survived and reproduced within hunted populations. Bighorn rams undertake long-distance breeding migrations in the weeks preceding the late-November rut. We analysed records of >7 800 trophy bighorn rams shot from 1974 to 2019 in Alberta, Canada, to test the hypothesis that high harvest pressure during breeding migrations was correlated with a greater decrease in horn size. We compared areas with and without a pronounced harvest peak in late October, when male breeding migrations begin. Areas without a pronounced harvest peak in late October, that likely experienced a lower harvest rate, showed a similar temporal decline in horn size, but no increase in age at harvest suggesting a possibly weaker decline in horn growth. Our study suggests that unselected immigrants from protected areas could partly buffer the effects of intense trophy hunting only if harvest pressure was reduced when breeding migrations commence.

Variation in age of primiparity in mountain goats (Oreamnos americanus) estimated from horn growth increments

Variation in age of primiparity is important for population dynamics and wildlife management because it can affect population growth. Using a novel technique based on the trade-off between annual horn growth and reproduction, we estimated the age of primiparity for 2274 female mountain goats (Oreamnos americanus (Blainville, 1816)) harvested across British Columbia, Canada, from 1976 to 2019. We then investigated spatio-temporal variation in the probability that harvested females were primiparous when aged 3, 4, or 5 years and older using Bayesian ordinal regressions. We found that the probability of primiparity at 3 years decreased over time in nearly all mountain ranges. In the Coastal Mountain range, however, the probability of primiparity at age 3 significantly increased. These results suggest that the large coastal populations of mountain goats could be more resilient to harvest than other populations in British Columbia, which may be experiencing environmental effects promoting later primiparity. Models predicting age of primiparity from annual growth measures are a valuable tool for wildlife management and could help conservation of many species.

Horn growth patterns of Nubian ibex from the Sinai, Egypt

Documenting patterns of horn growth and horn-age relationships of Nubian ibex (Capra nubiana) can contribute to a more comprehensive understanding of their natural history, horn development in ibex in general, and future conservation of the species. Our specific objectives included (1) documenting age-horn growth patterns; (2) contrasting horn growth patterns of Nubian ibex with other ibex species; and (3) determining whether horn development accurately reflects age of Nubian ibex in Sinai, Egypt. As expected, all male and female horn measurements had significant relationships with age. Horn growth in males started plateauing at ca. age 7–8, whereas female horn growth started plateauing at ca. age 4–6. The extremely arid environment of Nubian ibex in the Sinai may account for the slowing of horn growth at a younger age than seen in populations of some other ibex species. We found a significant relationship between the number of horn ridges and age, indicating that counting horn ridges provides a viable method of aging males to within ±1 y. Thus counting horn ridges may be a useful and non-invasive method to determine age or age class, which can further our understanding of age structure, the natural history, and management of Nubian ibex populations.

Stable body size of Alpine ungulates

In many species, decreasing body size has been associated with increasing temperatures. Although climate-induced phenotypic shifts, and evolutionary impacts, can affect the structure and functioning of marine and terrestrial ecosystems through biological and metabolic rules, evidence for shrinking body size is often challenged by (i) relatively short intervals of observation, (ii) a limited number of individuals, and (iii) confinement to small and isolated populations. To overcome these issues and provide important multi-species, long-term information for conservation managers and scientists, we compiled and analysed 222 961 measurements of eviscerated body weight, 170 729 measurements of hind foot length and 145 980 measurements of lower jaw length, in the four most abundant Alpine ungulate species: ibex (Capra ibex), chamois (Rupicapra rupicapra), red deer (Cervus elaphus) and roe deer (Capreolus capreolus). Regardless of age, sex and phylogeny, the body mass and size of these sympatric animals, from the eastern Swiss Alps, remained stable between 1991 and 2013. Neither global warming nor local hunting influenced the fitness of the wild ungulates studied at a detectable level. However, we cannot rule out possible counteracting effects of enhanced nutritional resources associated with longer and warmer growing seasons, as well as the animals' ability to migrate along extensive elevational gradients in the highly diversified alpine landscape of this study.

From low to high gear: there has been a paradigm shift in our understanding of evolution

Experimental studies of evolution performed in nature and the associated demonstration of rapid evolution, observable on a time scale of months to years, were an acclaimed novelty in the 1980-1990s. Contemporary evolution is now considered ordinary and is an integrated feature of many areas of research. This shift from extraordinary to ordinary reflects a change in the perception of evolution. It was formerly thought of as a historical process, perceived through the footprints left in the fossil record or living organisms. It is now seen as a contemporary process that acts in real time. Here we review how this shift occurred and its consequences for fields as diverse as wildlife management, conservation biology, and ecosystems ecology. Incorporating contemporary evolution in these fields has caused old questions to be recast, changed the answers, caused new and previously inconceivable questions to be addressed, and inspired the development of new subdisciplines. We argue further that the potential of contemporary evolution has yet to be fulfilled. Incorporating evolutionary dynamics in any research program can provide a better assessment of how and why organisms and communities came to be as they are than is attainable without an explicit treatment of these dynamics.