1
|
Zhang J, Shen H, Wang H, Zhang W, Deng X, Gao Q, Yang X, Chen J, Xie P. Salinity and seasonality shaping free-living and particle-associated bacterioplankton community assembly in lakeshores of the northeastern Qinghai-Tibet Plateau. ENVIRONMENTAL RESEARCH 2022; 214:113717. [PMID: 35760113 DOI: 10.1016/j.envres.2022.113717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Revised: 05/30/2022] [Accepted: 06/14/2022] [Indexed: 06/15/2023]
Abstract
Microorganisms in lakeshore zones are essential for pollution interception and biodiversity maintenance. However, the biogeographic patterns of bacterioplankton communities in lakeshore zones and the mechanisms that driving them are poorly understood. We analyzed the 16 S rRNA gene sequences of particle-associated (PA) and free-living (FL) bacterioplankton communities in the lakeshore zones of 14 alpine lakes in two seasons on Qinghai-Tibet Plateau to investigate the bacterial diversity, composition and assembly processes. Our results revealed that PA and FL bacterioplankton communities were driven by both seasonality and salinity in the lakeshores on Qinghai-Tibet Plateau. Compared to FL bacterioplankton, PA bacterioplankton communities were more susceptible to seasonality than spatial salinity. FL bacterioplankton communities were more salinity constrained than the PA counterpart. Besides, the Stegen null model analyses have validated a quantitative bias on stochastic processes at different spatial scales. At a regional scale, stochasticity was the predominant assembly process in both PA and FL bacterioplankton. While at a subregional scale, dispersal limitation was the main contributor of stochastic processes for PA bacterioplankton in summer and heterogeneous selection was the dominant deterministic processes in winter, whereas the community assembly of FL bacterioplankton was more stochastic processes (i.e., dispersal limitation) dominated in the freshwater type but deterministic process (i.e., heterogeneous selection) increased with increasing salinity. Our study provides new insights into both significant spatiotemporal patterns and distinct assembly processes of PA and FL bacterioplankton in alpine lakeshores on the northeastern Qinghai-Tibet Plateau.
Collapse
Affiliation(s)
- Jia Zhang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hong Shen
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.
| | - Huan Wang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan 570228, China
| | - Weizhen Zhang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; Center for the Pan-Third Pole Environment, Lanzhou University, Lanzhou, 730000, China
| | - Xuwei Deng
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Qiang Gao
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, Qinghai, China
| | - Xi Yang
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, Qinghai, China
| | - Jun Chen
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.
| | - Ping Xie
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, Qinghai, China; Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650091, China
| |
Collapse
|
2
|
Tian J, Huang X, Chen H, Kang X, Wang Y. Homogeneous selection is stronger for fungi in deeper peat than in shallow peat in the low-temperature fens of China. ENVIRONMENTAL RESEARCH 2022; 212:113312. [PMID: 35513061 DOI: 10.1016/j.envres.2022.113312] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 04/10/2022] [Accepted: 04/11/2022] [Indexed: 06/14/2023]
Abstract
Peatlands have accumulated enormous amounts of carbon over millennia, and climate changes threatens the release of this carbon into the atmosphere. Fungi are crucial drivers of global carbon cycling because they are the principal decomposer of organic matter in peatlands. However, the fungal community composition and ecological preferences in peat remain unclear, which restricts our ability to evaluate the role of the fungal community in peat biogeochemical functions. We investigated 54 soils from 6 low-temperature peatlands across China to fill this knowledge gap. The peat was divided into above-water table (AWT) and below-water table (BWT) layers based on the water table fluctuation. We investigated fungal community assembly processes and drivers for each peat layer. The results showed that fungal communities differed significantly among peat layers. The relative abundance of symbiotrophs was significantly higher in the AWT (17.4%) than in the BWT (9.0%), while the abundances of yeast and litter saprotrophs were obviously lower in the AWT than in the BWT. Our results revealed that the assemblage of both fungal taxonomic and phylogenetic communities was mainly governed by stochastic processes in both AWT (87.8%) and BWT (58.6%) layers. However, in the BWT, the relative importance of deterministic processes (28.4%) significantly increased, indicating a potential deterministic environmental selection induced by permanently anaerobic condition. Mean annual precipitation and mean annual temperature were the most critical drives for the assemblage of the fungal community in the BWT. These observations collectively indicate that fungal community assembly is depth-dependent, implying different community assembly mechanisms and ecological functions along the peat profile. These findings highlight the importance of climate driven deep peat fungal community composition assemblages and suggest the potential to project the changes in fungal diversity with ongoing climate change.
Collapse
Affiliation(s)
- Jianqing Tian
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
| | - Xinya Huang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Huai Chen
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China.
| | - Xiaoming Kang
- Institute of Wetland Research, Chinese Academy of Forestry, Beijing, 100091, China
| | - Yanfen Wang
- University of Chinese Academy of Sciences, Beijing, 100049, China
| |
Collapse
|
3
|
Ernakovich JG, Barbato RA, Rich VI, Schädel C, Hewitt RE, Doherty SJ, Whalen E, Abbott BW, Barta J, Biasi C, Chabot CL, Hultman J, Knoblauch C, Vetter M, Leewis M, Liebner S, Mackelprang R, Onstott TC, Richter A, Schütte U, Siljanen HMP, Taş N, Timling I, Vishnivetskaya TA, Waldrop MP, Winkel M. Microbiome assembly in thawing permafrost and its feedbacks to climate. GLOBAL CHANGE BIOLOGY 2022; 28:5007-5026. [PMID: 35722720 PMCID: PMC9541943 DOI: 10.1111/gcb.16231] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 03/24/2022] [Indexed: 05/15/2023]
Abstract
The physical and chemical changes that accompany permafrost thaw directly influence the microbial communities that mediate the decomposition of formerly frozen organic matter, leading to uncertainty in permafrost-climate feedbacks. Although changes to microbial metabolism and community structure are documented following thaw, the generality of post-thaw assembly patterns across permafrost soils of the world remains uncertain, limiting our ability to predict biogeochemistry and microbial community responses to climate change. Based on our review of the Arctic microbiome, permafrost microbiology, and community ecology, we propose that Assembly Theory provides a framework to better understand thaw-mediated microbiome changes and the implications for community function and climate feedbacks. This framework posits that the prevalence of deterministic or stochastic processes indicates whether the community is well-suited to thrive in changing environmental conditions. We predict that on a short timescale and following high-disturbance thaw (e.g., thermokarst), stochasticity dominates post-thaw microbiome assembly, suggesting that functional predictions will be aided by detailed information about the microbiome. At a longer timescale and lower-intensity disturbance (e.g., active layer deepening), deterministic processes likely dominate, making environmental parameters sufficient for predicting function. We propose that the contribution of stochastic and deterministic processes to post-thaw microbiome assembly depends on the characteristics of the thaw disturbance, as well as characteristics of the microbial community, such as the ecological and phylogenetic breadth of functional guilds, their functional redundancy, and biotic interactions. These propagate across space and time, potentially providing a means for predicting the microbial forcing of greenhouse gas feedbacks to global climate change.
Collapse
Affiliation(s)
- Jessica G. Ernakovich
- Natural Resources and the EnvironmentUniversity of New HampshireDurhamNew HampshireUSA
- Molecular, Cellular and Biomedical SciencesUniversity of New HampshireDurhamNew HampshireUSA
- EMergent Ecosystem Response to ChanGE (EMERGE) Biology Integration Institute
| | - Robyn A. Barbato
- U.S. Army Cold Regions Research and Engineering LaboratoryHanoverNew HampshireUSA
| | - Virginia I. Rich
- EMergent Ecosystem Response to ChanGE (EMERGE) Biology Integration Institute
- Microbiology DepartmentOhio State UniversityColumbusOhioUSA
- Byrd Polar and Climate Research CenterOhio State UniversityColombusOhioUSA
- Center of Microbiome ScienceOhio State UniversityColombusOhioUSA
| | - Christina Schädel
- Center for Ecosystem Science and SocietyNorthern Arizona UniversityFlagstaffArizonaUSA
| | - Rebecca E. Hewitt
- Center for Ecosystem Science and SocietyNorthern Arizona UniversityFlagstaffArizonaUSA
- Department of Environmental StudiesAmherst CollegeAmherstMassachusettsUSA
| | - Stacey J. Doherty
- Molecular, Cellular and Biomedical SciencesUniversity of New HampshireDurhamNew HampshireUSA
- U.S. Army Cold Regions Research and Engineering LaboratoryHanoverNew HampshireUSA
| | - Emily D. Whalen
- Natural Resources and the EnvironmentUniversity of New HampshireDurhamNew HampshireUSA
| | - Benjamin W. Abbott
- Department of Plant and Wildlife SciencesBrigham Young UniversityProvoUtahUSA
| | - Jiri Barta
- Centre for Polar EcologyUniversity of South BohemiaCeske BudejoviceCzech Republic
| | - Christina Biasi
- Department of Environmental and Biological SciencesUniversity of Eastern FinlandKuopioFinland
| | - Chris L. Chabot
- California State University NorthridgeNorthridgeCaliforniaUSA
| | | | - Christian Knoblauch
- Institute of Soil ScienceUniversität HamburgHamburgGermany
- Center for Earth System Research and SustainabilityUniversität HamburgHamburgGermany
| | - Maggie C. Y. Lau Vetter
- Department of GeosciencesPrinceton UniversityPrincetonNew JerseyUSA
- Laboratory of Extraterrestrial Ocean Systems (LEOS)Institute of Deep‐sea Science and EngineeringChinese Academy of SciencesSanyaChina
| | - Mary‐Cathrine Leewis
- U.S. Geological Survey, GeologyMinerals, Energy and Geophysics Science CenterMenlo ParkCaliforniaUSA
- Agriculture and Agri‐Food CanadaQuebec Research and Development CentreQuebecQuebecCanada
| | - Susanne Liebner
- GFZ German Research Centre for GeosciencesSection GeomicrobiologyPotsdamGermany
| | | | | | - Andreas Richter
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaAustria
- Austrian Polar Research InstituteViennaAustria
| | | | - Henri M. P. Siljanen
- Department of Environmental and Biological SciencesUniversity of Eastern FinlandKuopioFinland
| | - Neslihan Taş
- Lawrence Berkeley National LaboratoryBerkeleyCaliforniaUSA
| | | | - Tatiana A. Vishnivetskaya
- University of TennesseeKnoxvilleTennesseeUSA
- Institute of Physicochemical and Biological Problems of Soil SciencePushchinoRussia
| | - Mark P. Waldrop
- U.S. Geological Survey, GeologyMinerals, Energy and Geophysics Science CenterMenlo ParkCaliforniaUSA
| | - Matthias Winkel
- GFZ German Research Centre for GeosciencesInterface GeochemistryPotsdamGermany
- BfR Federal Institute for Risk AssessmentBerlinGermany
| |
Collapse
|
4
|
Xu Q, Du Z, Wang L, Xue K, Wei Z, Zhang G, Liu K, Lin J, Lin P, Chen T, Xiao C. The Role of Thermokarst Lake Expansion in Altering the Microbial Community and Methane Cycling in Beiluhe Basin on Tibetan Plateau. Microorganisms 2022; 10:1620. [PMID: 36014037 PMCID: PMC9412574 DOI: 10.3390/microorganisms10081620] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 08/05/2022] [Accepted: 08/07/2022] [Indexed: 11/16/2022] Open
Abstract
One of the most significant environmental changes across the Tibetan Plateau (TP) is the rapid lake expansion. The expansion of thermokarst lakes affects the global biogeochemical cycles and local climate regulation by rising levels, expanding area, and increasing water volumes. Meanwhile, microbial activity contributes greatly to the biogeochemical cycle of carbon in the thermokarst lakes, including organic matter decomposition, soil formation, and mineralization. However, the impact of lake expansion on distribution patterns of microbial communities and methane cycling, especially those of water and sediment under ice, remain unknown. This hinders our ability to assess the true impact of lake expansion on ecosystem services and our ability to accurately investigate greenhouse gas emissions and consumption in thermokarst lakes. Here, we explored the patterns of microorganisms and methane cycling by investigating sediment and water samples at an oriented direction of expansion occurred from four points under ice of a mature-developed thermokarst lake on TP. In addition, the methane concentration of each water layer was examined. Microbial diversity and network complexity were different in our shallow points (MS, SH) and deep points (CE, SH). There are differences of microbial community composition among four points, resulting in the decreased relative abundances of dominant phyla, such as Firmicutes in sediment, Proteobacteria in water, Thermoplasmatota in sediment and water, and increased relative abundance of Actinobacteriota with MS and SH points. Microbial community composition involved in methane cycling also shifted, such as increases in USCγ, Methylomonas, and Methylobacter, with higher relative abundance consistent with low dissolved methane concentration in MS and SH points. There was a strong correlation between changes in microbiota characteristics and changes in water and sediment environmental factors. Together, these results show that lake expansion has an important impact on microbial diversity and methane cycling.
Collapse
Affiliation(s)
- Qian Xu
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhiheng Du
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Lei Wang
- Zhuhai Branch of State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, Zhuhai 519087, China
| | - Kai Xue
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhiqiang Wei
- Zhuhai Branch of State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, Zhuhai 519087, China
| | - Gaosen Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Keshao Liu
- State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Jiahui Lin
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, Beijing 100875, China
| | - Penglin Lin
- College of Geography and Environmental Science, Northwest Normal University, Lanzhou 730070, China
| | - Tuo Chen
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Cunde Xiao
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, Beijing 100875, China
| |
Collapse
|
5
|
Ren Z, Luo W, Zhang C. Rare bacterial biosphere is more environmental controlled and deterministically governed than abundant one in sediment of thermokarst lakes across the Qinghai-Tibet Plateau. Front Microbiol 2022; 13:944646. [PMID: 35958159 PMCID: PMC9358708 DOI: 10.3389/fmicb.2022.944646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Accepted: 06/29/2022] [Indexed: 11/13/2022] Open
Abstract
Thermokarst lakes are widely distributed in cold regions as a result of ice-rich permafrost thaw. Disentangling the biogeography of abundant and rare microbes is essential to understanding the environmental influences, assembly mechanisms, and responses to climate change of bacterial communities in thermokarst lakes. In light of this, we assessed the abundant and rare bacterial subcommunities in sediments from thermokarst lakes across the Qinghai-Tibet Plateau (QTP). The operational taxonomic unit (OTU) richness was more strongly associated with location and climate factors for abundant subcommunities, while more strongly associated with physicochemical variables for rare subcommunities. The relative abundance of abundant and rare taxa showed opposite patterns with abundant taxa having greater relative abundance at higher latitude and pH, but at lower mean annual precipitation and nutrients. Both the abundant and rare subcommunities had a clear distribution pattern along the gradient of latitude and mean annual precipitation. Abundant subcommunities were dominantly shaped by dispersal limitation processes (80.9%), while rare subcommunities were shaped almost equally by deterministic (47.3%) and stochastic (52.7%) processes. The balance between stochastic and deterministic processes was strongly environmentally adjusted for rare subcommunities, while not associated with environmental changes for abundant subcommunities. The results shed light on biogeography patterns and structuring mechanisms of bacterial communities in thermokarst lakes, improving our ability to predict the influences of future climate change on these lakes.
Collapse
Affiliation(s)
- Ze Ren
- Research and Development Center for Watershed Environmental Eco-Engineering, Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, China
- School of Environment, Beijing Normal University, Beijing, China
- *Correspondence: Ze Ren
| | - Wei Luo
- Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai, China
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, China
- Wei Luo
| | - Cheng Zhang
- Research and Development Center for Watershed Environmental Eco-Engineering, Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, China
- School of Engineering Technology, Beijing Normal University, Zhuhai, China
| |
Collapse
|
6
|
Ren Z, Zhang Y, Li X, Zhang C. Biogeography of Micro-Eukaryotic Communities in Sediment of Thermokarst Lakes Are Jointly Controlled by Spatial, Climatic, and Physicochemical Factors Across the Qinghai-Tibet Plateau. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.901107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Thermokarst lakes are formed following ice-rich permafrost thaw and widely distribute in the cold regions with high latitude and elevation. However, the micro-eukaryotic communities (MECs) in thermokarst lakes are not well studied. Employing 18S rRNA gene sequencing, we assessed the biogeography of MECs and their driving factors in sediments of thermokarst lakes across the Qinghai-Tibet Plateau (QTP). Results showed that Diatom, Gastrotricha, Nematozoa, Ciliophora, and Cercozoa were dominant lineages in relative abundance and OTU richness. MECs varied substantially across the lakes in terms of diversity and composition. Structural equation modeling and mantel test showed that both OTU richness and community structure of MECs had close relationships with spatial factors, climatic factors, and sediment properties, particularly with latitude, mean annual precipitation, pH, as well as nutrient concentrations and stoichiometric ratios. Moreover, different groups of microbial eukaryotes (taxonomic groups and co-occurrence modules) responded differentially to the measured environmental variables. The results suggested that the biogeography of sediment MECs of thermokarst lakes on the QTP were jointly controlled by spatial and climatic factors as well as sediment properties. This study provides the first view of the composition, diversity, and underlying drivers of MECs dynamic in surface sediments of thermokarst lakes across the QTP.
Collapse
|
7
|
Ren Z, Zhang C, Li X, Ma K, Cui B. Abundant and Rare Bacterial Taxa Structuring Differently in Sediment and Water in Thermokarst Lakes in the Yellow River Source Area, Qinghai-Tibet Plateau. Front Microbiol 2022; 13:774514. [PMID: 35422785 PMCID: PMC9002311 DOI: 10.3389/fmicb.2022.774514] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 02/02/2022] [Indexed: 01/28/2023] Open
Abstract
Thermokarst lakes are forming from permafrost thaw and are severely affected by accelerating climate change. Sediment and water in these lakes are distinct habitats but closely connected. However, our understanding of the differences and linkages between sediment and water in thermokarst lakes remains largely unknown, especially from the perspective of community assembly mechanisms. Here, we examined bacterial communities in sediment and water in thermokarst lakes in the Yellow River Source area, Qinghai-Tibet Plateau. Bacterial taxa were divided into abundant and rare according to their relative abundance, and the Sorensen dissimilarity (βsor) was partitioned into turnover (βturn) and nestedness (βnest). The whole bacterial communities and the abundant and rare subcommunities differed substantially between sediment and water in taxonomical composition, α-diversity, and β-diversity. Sediment had significantly lower α-diversity indexes but higher β-diversity than water. In general, bacterial communities are predominantly governed by strong turnover processes (βturn/βsor ratio of 0.925). Bacterial communities in sediment had a significantly higher βturn/βsor ratio than in water. Abundant subcommunities were significantly lower in the βturn/βsor ratio compared with rare subcommunities. The results suggest that the bacterial communities of thermokarst lakes, especially rare subcommunities or particularly in sediment, might be strongly structured by heterogeneity in the source material, environmental filtering, and geographical isolation, leading to compositionally distinct communities. This integral study increased our current knowledge of thermokarst lakes, enhancing our understanding of the community assembly rules and ecosystem structures and processes of these rapidly changing and vulnerable ecosystems.
Collapse
Affiliation(s)
- Ze Ren
- Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, China.,School of Environment, Beijing Normal University, Beijing, China
| | - Cheng Zhang
- Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, China.,School of Engineering Technology, Beijing Normal University, Zhuhai, China
| | - Xia Li
- Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, China.,School of Environment, Beijing Normal University, Beijing, China
| | - Kang Ma
- School of Environment, Beijing Normal University, Beijing, China
| | - Baoshan Cui
- Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, China.,School of Environment, Beijing Normal University, Beijing, China
| |
Collapse
|
8
|
Tang X, Zhang L, Fan C, Wang L, Fu H, Ren S, Shen W, Jia S, Wu G, Zhang Y. Dietary Fiber Influences Bacterial Community Assembly Processes in the Gut Microbiota of Durco × Bamei Crossbred Pig. Front Microbiol 2021; 12:688554. [PMID: 34956107 PMCID: PMC8693415 DOI: 10.3389/fmicb.2021.688554] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 11/08/2021] [Indexed: 01/17/2023] Open
Abstract
Several studies have shown that dietary fiber can significantly alter the composition and structure of the gut bacterial community in humans and mammals. However, few researches have been conducted on the dynamics of the bacterial community assembly across different graded levels of dietary fiber in different gut regions. To address this, 24 Durco × Bamei crossbred pigs were randomly assigned to four experimental chows comprising graded levels of dietary fiber. Results showed that the α-and β-diversity of the bacterial community was significantly different between the cecum and the jejunum. Adding fiber to the chow significantly increased the α-diversity of the bacterial community in the jejunum and cecum, while the β-diversity decreased. The complexity of the bacterial network increased with the increase of dietary fiber in jejunal content samples, while it decreased in cecal content samples. Furthermore, we found that stochastic processes governed the bacterial community assembly of low and medium dietary fiber groups of jejunal content samples, while deterministic processes dominated the high fiber group. In addition, deterministic processes dominated all cecal content samples. Taken together, the variation of gut community composition and structure in response to dietary fiber was distinct in different gut regions, and the dynamics of bacterial community assembly across the graded levels of dietary fiber in different gut regions was also distinct. These findings enhanced our knowledge on the bacterial community assembly processes in gut ecosystems of livestock.
Collapse
Affiliation(s)
- Xianjiang Tang
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Liangzhi Zhang
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining, China
| | - Chao Fan
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Lei Wang
- Plateau Livestock Genetic Resources Protection and Innovative Utilization Key Laboratory of Qinghai Province, Qinghai Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Haibo Fu
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Shi'en Ren
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Wenjuan Shen
- Plateau Livestock Genetic Resources Protection and Innovative Utilization Key Laboratory of Qinghai Province, Qinghai Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Shangang Jia
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Guofang Wu
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Plateau Livestock Genetic Resources Protection and Innovative Utilization Key Laboratory of Qinghai Province, Qinghai Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Yanming Zhang
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.,Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining, China
| |
Collapse
|
9
|
Bartosiewicz M, Rzepka P, Lehmann MF. Tapping Freshwaters for Methane and Energy. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:4183-4189. [PMID: 33666422 DOI: 10.1021/acs.est.0c06210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Energy supply limits development through fuel constraints and climatic effects. Production of renewable energy is a central pillar of sustainability but will need to play an increasingly important role in energy generation in order to mitigate fossil-fuel based greenhouse-gas emissions. Global freshwaters represent a vast reservoir of biomass and biogenic CH4. Here we demonstrate the great potential for the optimized use of this nonfossil carbon as a source of energy that is replenishable within a human lifetime. The feasibility of up-scaled adsorption-driven technologies to capture and refine aqueous CH4 still awaits verification, yet recent estimates of global freshwater CH4 production imply that the worldwide energy demand could be satisfied by using the "biofuel" building up in lakes and wetlands. Biogenic CH4 is mostly generated from biomass produced through atmospheric CO2 uptake. Its exploitation in freshwaters can thus secure large amounts of carbon-neutral energy, helping to sustain the planetary equilibrium.
Collapse
Affiliation(s)
- Maciej Bartosiewicz
- Department of Environmental Sciences, University of Basel, 4056 Basel, Switzerland
| | - Przemyslaw Rzepka
- Institute for Chemistry and Bioengineering, ETH Zurich, Vladimir-Prelog-Weg 1, 8093 Zurich, Switzerland
| | - Moritz F Lehmann
- Department of Environmental Sciences, University of Basel, 4056 Basel, Switzerland
| |
Collapse
|