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Tiedge TM, Nagachar N, Wendt FR, Lakhtakia A, Roy R. High-throughput DNA sequencing of environmentally insulted latent fingerprints after visualization with nanoscale columnar-thin-film technique. Sci Justice 2021; 61:505-515. [PMID: 34482930 DOI: 10.1016/j.scijus.2021.06.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 04/17/2021] [Accepted: 06/05/2021] [Indexed: 11/19/2022]
Abstract
The goals of this study were to (a) ascertain human identity capabilities of DNA obtained from latent fingerprints that have been first environmentally insulted and then developed by the deposition of a columnar thin film (CTF), and (b) to determine if the CTF process and material are detrimental to single nucleotide polymorphism (SNP) analysis. Fingerprints were deposited on five different types of substrates and aged for one day, 7 days or 30 days while being environmentally insulted under one of the four conditions: 16.6 °C and 60% relative humidity (RH) (Condition A), 24.5 °C and 60% RH (Condition B), 35 °C and 67% RH (Condition C) and a cold condition (Condition D). Then CTF technique was then on 59% of these fingerprints. DNA samples from 805 fingerprints were extracted, quantified, subjected to manual library preparation using the Precision ID Identity Panel, and underwent high-throughput sequencing. The Ion S5™ platform was employed to sequence 124 SNP amplicons. SNPs were successfully sequenced from 802/805 samples. Total read depth was consistent across environmental conditions, and majority of samples had 100% profile completeness and 100% concordance. Anecdotally, libraries that were amplified with a higher cycle number had more 'Major Allele Frequency' flags compared to samples amplified with 23 cycle numbers, possibly due to stochastic effects. Neither the substrates nor the CTF process and materials inhibit downstream DNA analysis. DNA of low quality and quantity from the chosen samples can be sequenced using the Precision ID Identity Panel on the Ion S5™ platform which performed well, however, a different approach may be needed if spurious alleles are suspected.
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Affiliation(s)
- Teresa M Tiedge
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Nivedita Nagachar
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Frank R Wendt
- Department of Psychiatry, Yale University School of Medicine & VA CT Healthcare System, New Haven, CT 06511, USA
| | - Akhlesh Lakhtakia
- Materials Research Institute and Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA 16802, USA
| | - Reena Roy
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA.
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Tiedge TM, McAtee PD, McCormick MN, Lakhtakia A, Roy R. Massively parallel sequencing and STR analysis from partial bloody fingerprints enhanced with columnar thin films. Forensic Sci Int Genet 2020; 49:102369. [PMID: 32871490 DOI: 10.1016/j.fsigen.2020.102369] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 07/13/2020] [Accepted: 07/31/2020] [Indexed: 11/20/2022]
Abstract
Fingerprint enhancement often includes either physical or chemical approaches, such as fingerprint powder or cyanoacrylate fuming, to improve the quality of a fingerprint for visualization and analysis. However, these methods become more complex when fingerprints are partial bloody, and these procedures may interfere with downstream DNA analysis. Columnar thin film (CTF) deposition is a type of nanotechnology that utilizes an evaporant material to enhance a fingerprint under low-pressure conditions. Short tandem repeat (STR) analysis is the traditional method employed in crime laboratories. When DNA is of poor quality and quantity, like that often obtained from fingerprints, little to no genetic information may be obtained. Single nucleotide polymorphisms (SNPs) may be used to glean additional information when STR analysis fails. In this pilot study, 100 partial bloody fingerprints were collected from two donors and deposited on five different crime scene substrates, in which half were enhanced with CTFs and were graded for quality by an IAI-certified latent fingerprint examiner. CTF-developed fingerprints, on average, had higher grades compared to non-developed partial bloody fingerprints. STR analysis using Fusion 6C was performed to assess inhibition from the evaporant materials, in which no inhibition was observed. Sequencing of SNPs using the Precision ID Identity Panel was also employed, in which genetic information that could not be obtained from STRs was acquired with SNPs. Various sample types (i.e. pristine, low quality, and contaminated) utilized in this project demonstrated the acceptable performance of the Precision ID Identity Panel.
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Affiliation(s)
- Teresa M Tiedge
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, 16802, USA
| | - Patrick D McAtee
- Materials Research Institute and Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA, 16802, USA
| | - Mallory N McCormick
- Forensic Services Division, United States Secret Service, Washington, DC, 20223, USA
| | - Akhlesh Lakhtakia
- Materials Research Institute and Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA, 16802, USA
| | - Reena Roy
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, 16802, USA.
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Nagachar N, Tiedge TM, Lakhtakia A, McCormick MN, Roy R. Development of environmentally insulted fingermarks on nonporous forensically relevant substrates with conformal columnar thin films. CANADIAN SOCIETY OF FORENSIC SCIENCE JOURNAL 2020. [DOI: 10.1080/00085030.2020.1799658] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Nivedita Nagachar
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA
| | - Teresa M. Tiedge
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA
| | - Akhlesh Lakhtakia
- Materials Research Institute and Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA, USA
| | | | - Reena Roy
- Forensic Science Program and Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA
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Tiwari AK, Alaoui IM, Guddala S, Ramakrishna SA. Enhanced Visualization of Latent Fingermarks on Rough Aluminum Surfaces Using Sequential Au and Zn/ZnS/ZnO Depositions. J Forensic Sci 2017; 63:1275-1281. [PMID: 29098708 DOI: 10.1111/1556-4029.13686] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 10/14/2017] [Accepted: 10/16/2017] [Indexed: 11/29/2022]
Abstract
Detection and visualization of fingermarks on rough and diffuse surfaces is a relatively challenging task. We succeeded in developing latent fingermarks on scratched and rough aluminum surfaces by sequential deposition of a thin layer of gold followed by one of zinc or zinc-based compounds on the fingermarks. The best image enhancement was achieved with sequential Au and ZnS depositions. Using this combination, we could enhance the visualization of latent fingermarks aged over 65 days in normal conditions. The optical reflectance from the fingermarks with the deposited layers of metal/dielectric is analyzed as a stratified medium. Significant contrast in the reflectance from the regions of the ridges and the valleys of the fingermark would enhance the visualization. Our results show that the Au and ZnS bi-layer combination can have a large reflection contrast and improved fingermark visualization at wavelengths corresponding to the green light for specific thickness of ZnS.
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Affiliation(s)
- Anjani Kumar Tiwari
- Department of Physics, Indian Institute of Technology Kanpur, Kanpur, 208016, India
| | - Ismail Mekkaoui Alaoui
- Physics Department, Faculty of Sciences Semlalia, Cadi Ayyad University, Marrakech, 40000, Morocco
| | - Sriram Guddala
- Department of Physics, Indian Institute of Technology Kanpur, Kanpur, 208016, India
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Goecker ZC, Swiontek SE, Lakhtakia A, Roy R. Comparison of Quantifiler ® Trio and InnoQuant™ human DNA quantification kits for detection of DNA degradation in developed and aged fingerprints. Forensic Sci Int 2016; 263:132-138. [DOI: 10.1016/j.forsciint.2016.04.009] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2015] [Revised: 03/18/2016] [Accepted: 04/07/2016] [Indexed: 10/21/2022]
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Plazibat SL, Roy R, Swiontek SE, Lakhtakia A. Generation of DNA profiles from fingerprints developed with columnar thin film technique. Forensic Sci Int 2015; 257:453-457. [DOI: 10.1016/j.forsciint.2015.10.031] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Accepted: 10/29/2015] [Indexed: 11/28/2022]
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Plazibat SL, Swiontek SE, Lakhtakia A, Roy R. White-light vs. short-wavelength ultraviolet illumination of fingerprints developed with columnar thin films of Alq3. CANADIAN SOCIETY OF FORENSIC SCIENCE JOURNAL 2015. [DOI: 10.1080/00085030.2015.1073522] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Williams SF, Pulsifer DP, Shaler RC, Ramotowski RS, Brazelle S, Lakhtakia A. Comparison of the columnar-thin-film and vacuum-metal-deposition techniques to develop sebaceous fingermarks on nonporous substrates. J Forensic Sci 2014; 60:295-302. [PMID: 25421147 DOI: 10.1111/1556-4029.12648] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2013] [Revised: 02/20/2014] [Accepted: 03/06/2014] [Indexed: 11/28/2022]
Abstract
Both the columnar-thin-film (CTF) and the vacuum-metal-deposition (VMD) techniques for visualizing sebaceous fingermarks require the deposition of a material thereon in a vacuum chamber. Despite that similarity, there are many differences between the two techniques. The film deposited with the CTF technique has a columnar morphology, but the film deposited with the VMD technique comprises discrete islands. A split-print methodology on a variety of fingermarked substrates was used to determine that the CTF technique is superior for developing fingermarks on clear sandwich bags and partial bloody fingermarks on stainless steel. Both techniques are similar in their ability to develop fingermarks on glass but the CTF technique yields higher contrast. The VMD technique is superior for developing fingermarks on white grocery bags and the smooth side of Gloss Finish Scotch Multitask(™) tape. Neither technique worked well for fingermarks on black garbage bags.
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Affiliation(s)
- Stephanie F Williams
- Forensic Science Program, Pennsylvania State University, University Park, PA, 16802
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Williams SF, Pulsifer DP, Lakhtakia A, Shaler RC. Columnar-thin-film-assisted visualization of depleted sebaceous fingermarks on nonporous metals and hard plastics. J Forensic Sci 2014; 60:179-85. [PMID: 25284136 DOI: 10.1111/1556-4029.12599] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Revised: 12/25/2013] [Accepted: 01/05/2014] [Indexed: 11/27/2022]
Abstract
A fingermark on a nonporous substrate can be developed by depositing a columnar thin film (CTF) on it, but the CTF technique's sensitivity for low-quality fingermarks is unknown. The optimized CTF and traditional development of several depletion series of sebaceous-loaded fingermarks were compared using a split-print methodology as well as subjective and objective grading schemes, in a limited laboratory trial. CTF development was superior to development with selected traditional techniques on brass, anodized aluminum, black acrylonitrile butadiene styrene (ABS), and white nylon. On white ABS and black nylon, the CTF technique performed poorly but still as well as the best-performing traditional development technique. The CTF technique was more sensitive on brass and anodized aluminum than, and as sensitive on the four hard plastics and stainless steel as, the best-performing traditional technique. Thus, the CTF technique is useful to develop friction-ridge detail from limited fingermark residue on some smooth substrates.
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Affiliation(s)
- Stephanie F Williams
- Forensic Science Program, Pennsylvania State University, University Park, PA, 16802
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