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Liu Y, Chan KN, Li X, Zhao X, Chu D, Yin Y, Liu Y, Chen A. The Genetic Diversity of White-Backed Planthoppers ( Sogatella furcifera) between Myanmar and Yunnan Province of China. Genes (Basel) 2023; 14:2164. [PMID: 38136986 PMCID: PMC10743027 DOI: 10.3390/genes14122164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 11/17/2023] [Accepted: 11/22/2023] [Indexed: 12/24/2023] Open
Abstract
In order to clarify the migration route and the source of white-backed planthopper (WBPH) (Sogatella furcifera) between Myanmar and Yunnan Province, China, we collected six populations throughout Myanmar and five populations around the border areas in Yunnan Province, China. A total of 790 base pairs in the mtDNA COI genes from 416 individuals were obtained. A total of 43 haplotypes were identified, among which 37 were unique haplotypes, and the remaining 6 were shared among different populations. Two common shared haplotypes (H_1 and H_2) had a widespread distribution in all populations and accounted for 88.8% of the total haplotype frequency, suggesting a high-level gene flow among the Myanmar and Yunnan populations. Bayesian skyline plot (BSP) analysis results indicated that the effective population size of WBPH expanded between about 10,000 and 7000 years ago, and S. furcifera might follow the post-LGM (Last Glacial Maximum) expansion pattern. Based on the total migrant (Nem) value, it can be deduced that north and northeast Myanmar were the primary migration sources for WBPH populations in the southwest and south Yunnan regions. This study aims to contribute to the sustainable regional management of this important rice pest and provide new insights into the genetic diversity of WBPH in Southeast Asia.
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Affiliation(s)
- Yue Liu
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China
| | - Khin Nyein Chan
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
- Biotechnology Research Department, Ministry of Education, Mandalay 05151, Myanmar
| | - Xiangyong Li
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
| | - Xueqing Zhao
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
| | - Dong Chu
- Key Lab of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Yanqiong Yin
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
| | - Ying Liu
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
| | - Aidong Chen
- Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests of Yunnan Province/Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China (Y.Y.)
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Othman SN, Litvinchuk SN, Maslova I, Dahn H, Messenger KR, Andersen D, Jowers MJ, Kojima Y, Skorinov DV, Yasumiba K, Chuang MF, Chen YH, Bae Y, Hoti J, Jang Y, Borzee A. From Gondwana to the Yellow Sea, evolutionary diversifications of true toads Bufo sp. in the Eastern Palearctic and a revisit of species boundaries for Asian lineages. eLife 2022; 11:e70494. [PMID: 35089130 PMCID: PMC8920510 DOI: 10.7554/elife.70494] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 01/27/2022] [Indexed: 11/13/2022] Open
Abstract
Taxa with vast distribution ranges often display unresolved phylogeographic structures and unclear taxonomic boundaries resulting in hidden diversity. This hypothesis-driven study reveals the evolutionary history of Bufonidae, covering the phylogeographic patterns found in Holarctic bufonids from the West Gondwana to the phylogenetic taxonomy of Asiatic true toads in the Eastern Palearctic. We used an integrative approach relying on fossilized birth-death calibrations, population dynamics, gene-flow, species distribution, and species delimitation modeling to resolve the biogeography of the clade and highlight cryptic lineages. We verified the near-simultaneous Miocene radiations within Western and Eastern Palearctic Bufo, c. 14.49-10.00 Mya, temporally matching with the maximum dust outflows in Central Asian deserts. Contrary to earlier studies, we demonstrated that the combined impacts of long dispersal and ice-age refugia equally contributed to the current genetic structure of Bufo in East Asia. Our findings reveal a climate-driven adaptation in septentrional Eastern Asian Bufo, explaining its range shifts toward northern latitudes. We resolve species boundaries within the Eastern Palearctic Bufo, and redefine the taxonomic and conservation units of the northeastern species: B. sachalinensis and its subspecies.
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Affiliation(s)
- Siti N Othman
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry UniversityNanjingChina
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Spartak N Litvinchuk
- Institute of Cytology, Russian Academy of SciencesSt. PetersburgRussian Federation
| | - Irina Maslova
- Federal Scientific Center of the East Asia Terrestrial Biodiversity Far Eastern Branch of Russian Academy of SciencesVladivostokRussian Federation
| | - Hollis Dahn
- Department of Ecology and Evolutionary Biology, University of TorontoTorontoCanada
| | - Kevin R Messenger
- Herpetology and Applied Conservation Laboratory, College of Biology and the Environment, Nanjing Forestry UniversityNanjingChina
| | - Desiree Andersen
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Michael J Jowers
- CIBIO/InBIO (Centro de Investigação em Biodiversidade e Recursos Genéticos), Universidade do PortoVairãoPortugal
| | - Yosuke Kojima
- Graduate School of Human and Environmental Studies, Kyoto UniversityKyotoJapan
| | - Dmitry V Skorinov
- Institute of Cytology, Russian Academy of SciencesSt. PetersburgRussian Federation
| | | | - Ming-Feng Chuang
- Department of Life Sciences and Research Center for Global Change Biology, National Chung Hsing UniversityTaichungTaiwan
| | - Yi-Huey Chen
- Department of Life Science, Chinese Culture UniversityTaipeiTaiwan
| | - Yoonhyuk Bae
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Jennifer Hoti
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
- Department of Life Sciences and Systems Biology, University of TurinTurinItaly
| | - Yikweon Jang
- Department of Life Sciences and Division of EcoScience, Ewha Womans UniversitySeoulRepublic of Korea
| | - Amael Borzee
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry UniversityNanjingChina
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Dufresnes C, Litvinchuk SN. Diversity, distribution and molecular species delimitation in frogs and toads from the Eastern Palaearctic. Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlab083] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Abstract
Biodiversity analyses can greatly benefit from coherent species delimitation schemes and up-to-date distribution data. In this article, we have made the daring attempt to delimit and map described and undescribed lineages of anuran amphibians in the Eastern Palaearctic (EP) region in its broad sense. Through a literature review, we have evaluated the species status considering reproductive isolation and genetic divergence, combined with an extensive occurrence dataset (nearly 85k localities). Altogether 274 native species from 46 genera and ten families were retrieved, plus eight additional species introduced from other realms. Independent hotspots of species richness were concentrated in southern Tibet (Medog County), the circum-Sichuan Basin region, Taiwan, the Korean Peninsula and the main Japanese islands. Phylogeographic breaks responsible for recent in situ speciation events were shared around the Sichuan Mountains, across Honshu and between the Ryukyu Island groups, but not across shallow water bodies like the Yellow Sea and the Taiwan Strait. Anuran compositions suggested to restrict the zoogeographical limits of the EP to East Asia. In a rapidly evolving field, our study provides a checkpoint to appreciate patterns of species diversity in the EP under a single, spatially explicit, species delimitation framework that integrates phylogeographic data in taxonomic research.
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Affiliation(s)
- Christophe Dufresnes
- LASER, College of Biology & Environment, Nanjing Forestry University, Nanjing, China
| | - Spartak N Litvinchuk
- Institute of Cytology, Russian Academy of Sciences, St. Petersburg, Russia
- Department of Biology, Dagestan State University, Makhachkala, Russia
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Borzée A, Litvinchuk SN, Ri K, Andersen D, Nam TY, Jon GH, Man HS, Choe JS, Kwon S, Othman SN, Messenger K, Bae Y, Shin Y, Kim A, Maslova I, Luedtke J, Hobin L, Moores N, Seliger B, Glenk F, Jang Y. Update on Distribution and Conservation Status of Amphibians in the Democratic People's Republic of Korea: Conclusions Based on Field Surveys, Environmental Modelling, Molecular Analyses and Call Properties. Animals (Basel) 2021; 11:2057. [PMID: 34359183 PMCID: PMC8300379 DOI: 10.3390/ani11072057] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 05/25/2021] [Accepted: 07/01/2021] [Indexed: 11/17/2022] Open
Abstract
Determining the range, status, ecology and behaviour of species from areas where surveys and samplings are uncommon or difficult to conduct is a challenge, such as in the Democratic People's Republic of Korea (DPR Korea). Here, we used genetic samples, field surveys, call recordings, photographic identification and a literature review to estimate the presence, range and status of amphibians in the DPR Korea. From our combined results and based on the IUCN Red List categories and criteria, we were able to estimate the national threat levels for most species. Our results demonstrated the presence of 18 native species and the suspected presence of Karsenia koreana and two Onychodactylus species. We reported the first record for Rana uenoi in the vicinity of Pyongyang using molecular tools and similarly confirmed the presence of Dryophytes japonicus at the same location. Based on distribution and modelling, we can expect the contact zone between species within the Rana and Onychodactylus genera to be located along the Changbai Massif, a mountain range that marks a shift in ecoregions and acts as a barrier to dispersion. The species richness was higher in the lowlands and at lower latitudes, with such areas populated by up to 11 species, while more northern regions were characterised by species richness of about half of that value. The combination of ecological models and known threats resulted in the recommendation of ten species as threatened at the national level following the IUCN Red List categories and criteria. This high number of threatened species was anticipated based on the high threat level to amphibians in bordering nations and globally. While the ecology of species in the DPR Korea is still understudied, we argue that species relying on agricultural wetlands such as rice paddies are not under imminent threat due to the enduring presence of extensive agricultural landscapes with low rates of chemical use and mechanisation. The maintenance of such landscapes is a clear benefit to amphibian species, in contrast to more industrialised agricultural landscapes in neighbouring nations. In comparison, the status of species dependent on forested habitats is unclear and threat levels are likely to be higher because of deforestation, as in neighbouring nations.
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Affiliation(s)
- Amaël Borzée
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China; (Y.B.); (Y.S.)
- Amphibian Specialist Group, IUCN Species Survival Commission, Toronto, ON L5A, Canada; (J.L.); (L.H.)
| | - Spartak N. Litvinchuk
- Institute of Cytology, Russian Academy of Sciences, Tikhoretsky pr. 4, 194064 St. Petersburg, Russia;
- Department of Zoology and Physiology, Dagestan State University, Gadzhiyev str. 43-a, Makhachkala, 3367000 Dagestan, Russia
| | - Kyongsim Ri
- Department of International Economic Cooperation, Ministry of Land and Environment Protection, Pyongyang, Democratic People’s Republic of Korea
| | - Desiree Andersen
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Tu Yong Nam
- Institute of Zoology, State Academy of Science, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Gwang Hyok Jon
- Department of Ecology, State Academy of Science, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Ho Song Man
- Department of Ecology, Life Science College, Kim Il Sung University, Ryongnam-dong, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Jong Sik Choe
- Department of Ecology, Life Science College, Kim Il Sung University, Ryongnam-dong, Daesong-dong, Daesong District, Pyongyang, Democratic People’s Republic of Korea
| | - Sera Kwon
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Siti N. Othman
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Kevin Messenger
- Herpetology and Applied Conservation Lab, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China;
| | - Yoonhyuk Bae
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China; (Y.B.); (Y.S.)
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Yucheol Shin
- Laboratory of Animal Behaviour and Conservation, College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd, Nanjing 210037, China; (Y.B.); (Y.S.)
| | - Ajoung Kim
- Interdisciplinary Program of Eco Creative, Ewha Womans University, Seoul 03760, Korea; (D.A.); (S.K.); (S.N.O.); (A.K.)
| | - Irina Maslova
- Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of Russian Academy of Sciences, 690022 Vladivostok, Russia;
| | - Jennifer Luedtke
- Amphibian Specialist Group, IUCN Species Survival Commission, Toronto, ON L5A, Canada; (J.L.); (L.H.)
- Re:wild, Austin, TX 78746, USA
| | - Louise Hobin
- Amphibian Specialist Group, IUCN Species Survival Commission, Toronto, ON L5A, Canada; (J.L.); (L.H.)
| | - Nial Moores
- Birds Korea, 101-1902, Hyundai I Park, Busan 48559, Korea;
| | | | - Felix Glenk
- Hanns Seidel Foundation, Seoul 04419, Korea; (B.S.); (F.G.)
| | - Yikweon Jang
- Department of Life Sciences and Division of EcoScience, Ewha Womans University, Seoul 03760, Korea;
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