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Godoy MS, de Miguel SR, Prieto MA. A singular PpaA/AerR-like protein in Rhodospirillum rubrum rules beyond the boundaries of photosynthesis in response to the intracellular redox state. mSystems 2023; 8:e0070223. [PMID: 38054698 PMCID: PMC10734443 DOI: 10.1128/msystems.00702-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 10/18/2023] [Indexed: 12/07/2023] Open
Abstract
IMPORTANCE Rhodospirillum rubrum vast metabolic versatility places it as a remarkable model bacterium and an excellent biotechnological chassis. The key component of photosynthesis (PS) studied in this work (HP1) stands out among the other members of PpaA/AerR anti-repressor family since it lacks the motif they all share: the cobalamin B-12 binding motif. Despite being reduced and poorly conserved, HP1 stills controls PS as the other members of the family, allowing a fast response to changes in the redox state of the cell. This work also shows that HP1 absence affects genes from relevant biological processes other than PS, including nitrogen fixation and stress response. From a biotechnological perspective, HP1 could be manipulated in approaches where PS is not necessary, such as hydrogen or polyhydroxyalkanoates production, to save energy.
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Affiliation(s)
- Manuel S. Godoy
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain
- Interdisciplinary Platform for Sustainable Plastics towards a Circular Economy‐CSIC (SusPlast‐CSIC), Madrid, Spain
| | - Santiago R. de Miguel
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain
- Interdisciplinary Platform for Sustainable Plastics towards a Circular Economy‐CSIC (SusPlast‐CSIC), Madrid, Spain
| | - M. Auxiliadora Prieto
- Polymer Biotechnology Lab, Biological Research Centre Margarita Salas, Spanish National Research Council (CIB-CSIC), Madrid, Spain
- Interdisciplinary Platform for Sustainable Plastics towards a Circular Economy‐CSIC (SusPlast‐CSIC), Madrid, Spain
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Schimanofsky C, Wielend D, Kröll S, Lerch S, Werner D, Gallmetzer JM, Mayr F, Neugebauer H, Irimia-Vladu M, Portenkirchner E, Hofer TS, Sariciftci NS. Direct Electrochemical CO 2 Capture Using Substituted Anthraquinones in Homogeneous Solutions: A Joint Experimental and Theoretical Study. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2022; 126:14138-14154. [PMID: 36051252 PMCID: PMC9421899 DOI: 10.1021/acs.jpcc.2c03129] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 07/12/2022] [Indexed: 06/15/2023]
Abstract
Electrochemical capture of carbon dioxide (CO2) using organic quinones is a promising and intensively studied alternative to the industrially established scrubbing processes. While recent studies focused only on the influence of substituents having a simple mesomeric or nucleophilicity effect, we have systematically selected six anthraquinone (AQ) derivatives (X-AQ) with amino and hydroxy substituents in order to thoroughly study the influence thereof on the properties of electrochemical CO2 capture. Experimental data from cyclic voltammetry (CV) and UV-Vis spectroelectrochemistry of solutions in acetonitrile were analyzed and compared with innovative density functional tight binding computational results. Our experimental and theoretical results provide a coherent explanation of the influence of CO2 on the CV data in terms of weak and strong binding nomenclature of the dianions. In addition to this terminology, we have identified the dihydroxy substituted AQ as a new class of molecules forming rather unstable [X-AQ-(CO2) n ]2- adducts. In contrast to the commonly used dianion consideration, the results presented herein reveal opposite trends in stability for the X-AQ-CO2 •- radical species for the first time. To the best of our knowledge, this study presents theoretically calculated UV-Vis spectra for the various CO2-AQ reduction products for the first time, enabling a detailed decomposition of the spectroelectrochemical data. Thus, this work provides an extension of the existing classification with proof of the existence of X-AQ-CO2 species, which will be the basis of future studies focusing on improved materials for electrochemical CO2 capture.
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Affiliation(s)
- Corina Schimanofsky
- Linz
Institute for Organic Solar Cells (LIOS), Institute of Physical Chemistry, Johannes Kepler University Linz, Altenberger Straße 69, 4040 Linz, Austria
| | - Dominik Wielend
- Linz
Institute for Organic Solar Cells (LIOS), Institute of Physical Chemistry, Johannes Kepler University Linz, Altenberger Straße 69, 4040 Linz, Austria
| | - Stefanie Kröll
- Theoretical
Chemistry Division, Institute for General, Inorganic and Theoretical
Chemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Sabine Lerch
- Theoretical
Chemistry Division, Institute for General, Inorganic and Theoretical
Chemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Daniel Werner
- Institute
of Physical Chemistry, University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria
| | - Josef M. Gallmetzer
- Theoretical
Chemistry Division, Institute for General, Inorganic and Theoretical
Chemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Felix Mayr
- Linz
Institute for Organic Solar Cells (LIOS), Institute of Physical Chemistry, Johannes Kepler University Linz, Altenberger Straße 69, 4040 Linz, Austria
- Institute
of Applied Physics, Johannes Kepler University
Linz, Altenberger Straße
69, 4040 Linz, Austria
| | - Helmut Neugebauer
- Linz
Institute for Organic Solar Cells (LIOS), Institute of Physical Chemistry, Johannes Kepler University Linz, Altenberger Straße 69, 4040 Linz, Austria
| | - Mihai Irimia-Vladu
- Linz
Institute for Organic Solar Cells (LIOS), Institute of Physical Chemistry, Johannes Kepler University Linz, Altenberger Straße 69, 4040 Linz, Austria
| | | | - Thomas S. Hofer
- Theoretical
Chemistry Division, Institute for General, Inorganic and Theoretical
Chemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Niyazi Serdar Sariciftci
- Linz
Institute for Organic Solar Cells (LIOS), Institute of Physical Chemistry, Johannes Kepler University Linz, Altenberger Straße 69, 4040 Linz, Austria
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Park J, Lee B, Shi P, Kwon H, Jeong SM, Jun H. Methanol metabolism and archaeal community changes in a bioelectrochemical anaerobic digestion sequencing batch reactor with copper-coated graphite cathode. BIORESOURCE TECHNOLOGY 2018; 259:398-406. [PMID: 29597148 DOI: 10.1016/j.biortech.2018.03.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Revised: 02/28/2018] [Accepted: 03/01/2018] [Indexed: 06/08/2023]
Abstract
In this study, the metabolism of methanol and changes in an archaeal community were examined in a bioelectrochemical anaerobic digestion sequencing batch reactor with a copper-coated graphite cathode (BEAD-SBRCu). Copper-coated graphite cathode produced methanol from food waste. The BEAD-SBRCu showed higher methanol removal and methane production than those of the anaerobic digestion (AD)-SBR. The methane production and pH of the BEAD-SBRCu were stable even under a high organic loading rate (OLR). The hydrogenotrophic methanogens increased from 32.2 to 60.0%, and the hydrogen-dependent methylotrophic methanogens increased from 19.5 to 37.7% in the bulk of BEAD-SBRCu at high OLR. Where methanol was directly injected as a single substrate into the BEAD-SBRCu, the main metabolism of methane production was hydrogenotrophic methanogenesis using carbon dioxide and hydrogen released by the oxidation of methanol on the anode through bioelectrochemical reactions.
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Affiliation(s)
- Jungyu Park
- Department of Environmental Engineering, Chungbuk National University, Cheongju 361-763, Republic of Korea
| | - Beom Lee
- Department of Environmental Engineering, Chungbuk National University, Cheongju 361-763, Republic of Korea
| | - Peng Shi
- Department of Environmental Engineering, Chungbuk National University, Cheongju 361-763, Republic of Korea
| | - Hyejeong Kwon
- Department of Environmental Engineering, Chungbuk National University, Cheongju 361-763, Republic of Korea
| | - Sang Mun Jeong
- Department of Chemical Engineering, Chungbuk National University, Cheongju 361-763, Republic of Korea
| | - Hangbae Jun
- Department of Environmental Engineering, Chungbuk National University, Cheongju 361-763, Republic of Korea.
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Timmis K, de Lorenzo V, Verstraete W, Ramos JL, Danchin A, Brüssow H, Singh BK, Timmis JK. The contribution of microbial biotechnology to economic growth and employment creation. Microb Biotechnol 2017; 10:1137-1144. [PMID: 28868756 PMCID: PMC5609265 DOI: 10.1111/1751-7915.12845] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Accepted: 08/01/2017] [Indexed: 11/29/2022] Open
Abstract
Our communication discusses the profound impact of bio-based economies - in particular microbial biotechnologies - on SDG 8: Promote sustained, inclusive and sustainable economic growth, full and productive employment and decent work for all. A bio-based economy provides significant potential for improving labour supply, education and investment, and thereby for substantially increasing the demographic dividend. This, in turn, improves the sustainable development of economies.
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Affiliation(s)
- Kenneth Timmis
- Institute of MicrobiologyTechnical University of BraunschweigBraunschweigGermany
| | | | - Willy Verstraete
- Center for Microbial Ecology and Technology (CMET)Ghent UniversityGhentBelgium
| | | | | | | | - Brajesh K. Singh
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithSAAustralia
| | - James Kenneth Timmis
- Student MSc Health PolicyDepartment of Surgery and CancerImperial College LondonUK
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Godoy MS, Mongili B, Fino D, Prieto MA. About how to capture and exploit the CO 2 surplus that nature, per se, is not capable of fixing. Microb Biotechnol 2017; 10:1216-1225. [PMID: 28805313 PMCID: PMC5609282 DOI: 10.1111/1751-7915.12805] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 07/13/2017] [Indexed: 11/30/2022] Open
Abstract
Human activity has been altering many ecological cycles for decades, disturbing the natural mechanisms which are responsible for re-establishing the normal environmental balances. Probably, the most disrupted of these cycles is the cycle of carbon. In this context, many technologies have been developed for an efficient CO2 removal from the atmosphere. Once captured, it could be stored in large geological formations and other reservoirs like oceans. This strategy could present some environmental and economic problems. Alternately, CO2 can be transformed into carbonates or different added-value products, such as biofuels and bioplastics, recycling CO2 from fossil fuel. Currently different methods are being studied in this field. We classified them into biological, inorganic and hybrid systems for CO2 transformation. To be environmentally compatible, they should be powered by renewable energy sources. Although hybrid systems are still incipient technologies, they have made great advances in the recent years. In this scenario, biotechnology is the spearhead of ambitious strategies to capture CO2 and reduce global warming.
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Affiliation(s)
- Manuel S Godoy
- Polymer Biotechnology Lab, Centro de Investigaciones Biologicas (CIB), C/Ramiro de Maeztu, 9, 28040, Madrid, Spain
| | - Beatrice Mongili
- Department of Applied Science and Technology (DISAT), Politecnico di Torino, Corso Duca Degli Abruzzi 24, Torino, Italy
| | - Debora Fino
- Department of Applied Science and Technology (DISAT), Politecnico di Torino, Corso Duca Degli Abruzzi 24, Torino, Italy
| | - M Auxiliadora Prieto
- Polymer Biotechnology Lab, Centro de Investigaciones Biologicas (CIB), C/Ramiro de Maeztu, 9, 28040, Madrid, Spain
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