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Lin Q, Li L, De Vrieze J, Li C, Fang X, Li X. Functional conservation of microbial communities determines composition predictability in anaerobic digestion. THE ISME JOURNAL 2023; 17:1920-1930. [PMID: 37666974 PMCID: PMC10579369 DOI: 10.1038/s41396-023-01505-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 08/24/2023] [Accepted: 08/29/2023] [Indexed: 09/06/2023]
Abstract
A major challenge in managing and engineering microbial communities is determining whether and how microbial community responses to environmental alterations can be predicted and explained, especially in microorganism-driven systems. We addressed this challenge by monitoring microbial community responses to the periodic addition of the same feedstock throughout anaerobic digestion, a typical microorganism-driven system where microorganisms degrade and transform the feedstock. The immediate and delayed response consortia were assemblages of microorganisms whose abundances significantly increased on the first or third day after feedstock addition. The immediate response consortia were more predictable than the delayed response consortia and showed a reproducible and predictable order-level composition across multiple feedstock additions. These results stood in both present (16 S rRNA gene) and potentially active (16 S rRNA) microbial communities and in different feedstocks with different biodegradability and were validated by simulation modeling. Despite substantial species variability, the immediate response consortia aligned well with the reproducible CH4 production, which was attributed to the conservation of expressed functions by the response consortia throughout anaerobic digestion, based on metatranscriptomic data analyses. The high species variability might be attributed to intraspecific competition and contribute to biodiversity maintenance and functional redundancy. Our results demonstrate reproducible and predictable microbial community responses and their importance in stabilizing system functions.
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Affiliation(s)
- Qiang Lin
- Key Laboratory of Environmental and Applied Microbiology, CAS; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Lingjuan Li
- Department of Biology, University of Antwerp, 2610, Wilrijk, Belgium
| | - Jo De Vrieze
- Center for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, Ghent, 9000, Belgium
| | - Chaonan Li
- Key Laboratory of Environmental and Applied Microbiology, CAS; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Xiaoyu Fang
- Key Laboratory of Environmental and Applied Microbiology, CAS; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Xiangzhen Li
- Key Laboratory of Environmental and Applied Microbiology, CAS; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China.
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2
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Chen Q, Xiang Q, Sun A, Hu H. Aridity differentially alters the stability of soil bacterial and fungal networks in coastal and inland areas of Australia. Environ Microbiol 2022; 24:5574-5582. [PMID: 36070190 PMCID: PMC9825871 DOI: 10.1111/1462-2920.16186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 08/29/2022] [Indexed: 01/11/2023]
Abstract
Despite the importance of soil bacterial and fungal communities for ecosystem services and human welfare, how their ecological networks respond to climatic aridity have yet been evaluated. Here, we collected soil samples from 47 sites across 2500 km in coastal and inland areas of eastern Australia with contrasting status of aridity. We found that the diversity of both bacteria and fungi significantly differed between inland and coastal soils. Despite the significant differences in soil nutrient availability and stoichiometry between the inland and coastal regions, aridity was the most important predictor of bacterial and fungal community compositions. Aridity has altered the potential microbial migration rates and further impacted the microbial assembly processes by increasing the importance of stochasticity in bacterial and fungal communities. More importantly, ecological network analysis indicated that aridity enhanced the complexity and stability of the bacterial network but reduced that of the fungal network, possibly due to the contrasting impacts of aridity on the community-level habitat niche breadth and overlaps. Our work paves the way towards a more comprehensive understanding of how climate changes will alter soil microbial communities, which is integral to predicting their long-term consequences for ecosystem sustainability and resilience to future disturbances.
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Affiliation(s)
- Qing‐Lin Chen
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban EnvironmentChinese Academy of SciencesXiamenChina,Faculty of Veterinary and Agricultural SciencesThe University of MelbourneParkvilleVictoriaAustralia
| | - Qian Xiang
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban EnvironmentChinese Academy of SciencesXiamenChina,Zhejiang Key Laboratory of Urban Environmental Processes and Pollution ControlCAS Haixi Industrial Technology Innovation Center in BeilunNingboChina
| | - An‐Qi Sun
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban EnvironmentChinese Academy of SciencesXiamenChina,Zhejiang Key Laboratory of Urban Environmental Processes and Pollution ControlCAS Haixi Industrial Technology Innovation Center in BeilunNingboChina
| | - Hang‐Wei Hu
- Faculty of Veterinary and Agricultural SciencesThe University of MelbourneParkvilleVictoriaAustralia
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3
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Yang X, Zhang Z, Li S, He Q, Peng X, Du X, Feng K, Wang S, Deng Y. Fungal dynamics and potential functions during anaerobic digestion of food waste. ENVIRONMENTAL RESEARCH 2022; 212:113298. [PMID: 35430281 DOI: 10.1016/j.envres.2022.113298] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 04/09/2022] [Accepted: 04/09/2022] [Indexed: 06/14/2023]
Abstract
Fungi could play an important role during anaerobic digestion (AD), but have received less attention than prokaryotes. Here, AD bioreactors of food waste were performed to explore fungal succession and their potential ecological and engineering value. We found that similar patterns in fungal biomass and diversity, decreasing from the initial time point (Day 0) to the lowest value within 3-6 days and then started to rise and stabilized between 9 and 42 days. Throughout the entire AD process, variations in fungal community composition were observed and dominant fungal taxa have the potential ability to degrade complex organic matter and alleviate fatty acid and ammonia accumulation. Furthermore, we found that deterministic processes gradually dominated fungal assembly succession (up to 84.85% at the final stage), suggesting changing environmental status responsible for fungal community dynamics and specifically, fungal community structure, diversity and biomass were regulated by different environmental variables or the same variables with opposite effects. AD bioreactors could directionally select specific fungal taxa over time, but some highly abundant fungi could not be mapped to any fungal species with defined function in the reference database, so function prediction relying on PICRUSt2 may underestimate fungal function in AD systems. Collectively, our study confirmed fungi have important ecological and engineering values in AD systems.
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Affiliation(s)
- Xingsheng Yang
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhaojing Zhang
- Institute for Marine Science and Technology, Shandong University, Qingdao, 266237, China
| | - Shuzhen Li
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
| | - Qing He
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xi Peng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiongfeng Du
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Kai Feng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
| | - Shang Wang
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China.
| | - Ye Deng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
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Kumar R, Kumar R, Brar SK, Kaur G. Next-generation -omics approaches to drive carboxylate production by acidogenic fermentation of food waste: a review. Bioengineered 2022; 13:14987-15002. [PMID: 37105768 DOI: 10.1080/21655979.2023.2180583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023] Open
Abstract
Acidogenic fermentation of food waste using mixed microbial cultures can produce carboxylates [or volatile fatty acids (VFA)] as high-valued bioproducts via a complex interplay of microorganisms during different stages of this process. However, the present fermentation systems are incapable of reaching the industrially relevant VFA production yields of ≥50 g/L primarly due to the complex process operation, competitive metabolic pathways, and limited understanding of microbial interplays. Recent reports have demonstrated the significant roles played by microbial communities from different phyla, which work together to control the process kinetics of various stages underlying acidogenic fermentation. In order to fully delineate the abundance, structure, and functionality of these microbial communities, next-generation high-throughput meta-omics technologies are required. In this article, we review the potential of metagenomics and metatranscriptomics approaches to enable microbial community engineering. Specifically, a deeper analysis of taxonomic relationships, shifts in microbial communities, and differences in the genetic expression of key pathway enzymes under varying operational and environmental parameters of acidogenic fermentation could lead to the identification of species-level functionalities for both cultivable and non-cultivable microbial fractions. Furthermore, it could also be used for successful gene sequence-guided microbial isolation and consortium development for bioaugmentation to allow VFA production with high concentrations and purity. Such highly controlled and engineered microbial systems could pave the way for tailored and high-yielding VFA synthesis, thereby creating a petrochemically competitive waste-to-value chain and promoting the circular bioeconomy.Research HighlightsMixed microbial mediated acidogenic fermentation of food waste.Metagenomics and metatranscriptomics based microbial community analysis.Omics derived function-associated microbial isolation and consortium engineering.High-valued sustainable carboxylate bio-products, i.e. volatile fatty acids.
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Affiliation(s)
- Reema Kumar
- Department of Civil Engineering, Lassonde School of Engineering, York University, Toronto, Ontario, Canada
| | - Rajat Kumar
- Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong
| | - Satinder K Brar
- Department of Civil Engineering, Lassonde School of Engineering, York University, Toronto, Ontario, Canada
| | - Guneet Kaur
- Department of Civil Engineering, Lassonde School of Engineering, York University, Toronto, Ontario, Canada
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Tan P, Liu H, Zhao J, Gu X, Wei X, Zhang X, Ma N, Johnston LJ, Bai Y, Zhang W, Nie C, Ma X. Amino acids metabolism by rumen microorganisms: Nutrition and ecology strategies to reduce nitrogen emissions from the inside to the outside. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 800:149596. [PMID: 34426337 DOI: 10.1016/j.scitotenv.2021.149596] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 08/06/2021] [Accepted: 08/07/2021] [Indexed: 06/13/2023]
Abstract
For the ruminant animal industry, the emission of nitrogenous substances, such as nitrous oxide (N2O) and ammonia (NH3), not only challenges environmental sustainability but also restricts its development. The metabolism of proteins and amino acids by rumen microorganisms is a key factor affecting nitrogen (N) excretion in ruminant animals. Rumen microorganisms that affect N excretion mainly include three types: proteolytic and peptidolytic bacteria (PPB), ureolytic bacteria (UB), and hyper-ammonia-producing bacteria (HAB). Microbes residing in the rumen, however, are influenced by several complex factors, such as diet, which results in fluctuations in the rumen metabolism of proteins and amino acids and ultimately affects N emission. Combining feed nutrition strategies (including ingredient adjustment and feed additives) and ecological mitigation strategies of N2O and NH3 in industrial practice can reduce the emission of nitrogenous pollutants from the ruminant breeding industry. In this review, the characteristics of the rumen microbial community related to N metabolism in ruminants were used as the metabolic basis. Furthermore, an effective strategy to increase N utilisation efficiency in combination with nutrition and ecology was reviewed to provide an inside-out approach to reduce N emissions from ruminants.
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Affiliation(s)
- Peng Tan
- State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
| | - Han Liu
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang 832000, China; College of Animal Science and Veterinary Medicine, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Jing Zhao
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang 832000, China; College of Animal Science and Veterinary Medicine, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Xueling Gu
- State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
| | - Xiaobing Wei
- College of Animal Science and Veterinary Medicine, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Xiaojian Zhang
- College of Animal Science and Veterinary Medicine, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Ning Ma
- State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
| | - Lee J Johnston
- West Central Research & Outreach Center, University of Minnesota, Morris, MN 56267, USA
| | - Yueyu Bai
- College of Animal Science and Veterinary Medicine, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Wenju Zhang
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang 832000, China
| | - Cunxi Nie
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang 832000, China
| | - Xi Ma
- State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang 832000, China.
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Gallardo-Altamirano MJ, Maza-Márquez P, Montemurro N, Pérez S, Rodelas B, Osorio F, Pozo C. Insights into the removal of pharmaceutically active compounds from sewage sludge by two-stage mesophilic anaerobic digestion. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 789:147869. [PMID: 34051504 DOI: 10.1016/j.scitotenv.2021.147869] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 03/22/2021] [Accepted: 05/14/2021] [Indexed: 05/23/2023]
Abstract
The removal efficiencies (REs) of twenty-seven pharmaceutically active compounds (PhACs) (eight analgesic/anti-inflammatories, six antibiotics, four β-blockers, two antihypertensives/diuretics, three lipid regulators and four psychiatric drugs) were evaluated in a pilot-scale two-stage mesophilic anaerobic digestion (MAD) system treating thickened sewage sludge from a pilot-scale A2O™ wastewater treatment plant (WWTP) which was fed with wastewater from the pre-treatment of the full-scale WWTP Murcia Este (Murcia, Spain). The MAD system was long-term operated using two different sets of sludge retention times (SRTs) for the acidogenic (AcD) and methanogenic (MD) digesters (phase I, 2 and 12 days; and phase II, 5 and 24 days, in AcD and MD, respectively). Quantitative PCR (qPCR) and Illumina MiSeq sequencing were used to estimate the absolute abundance of Bacteria, Archaea, and Fungi and investigate the structure, diversity and population dynamics of their communities in the AcD and MD effluents. The extension of the SRT from 12 (phase I) to 24 days (phase II) in the MD was significantly linked with an improved removal of carbamazepine, clarithromycin, codeine, gemfibrozil, ibuprofen, lorazepam, and propranolol. The absolute abundances of total Bacteria and Archaea were higher in the MD regardless of the phase, while the diversity of bacterial and archaeal communities was lower in phase II, in both digesters. Non-metric multidimensional scaling (MDS) plots showed strong negative correlations among phyla Proteobacteria and Firmicutes and between genera Methanosaeta and Methanosarcina throughout the full experimental period. Strong positive correlations were revealed between the relative abundances of Methanospirillum and Methanoculleus and the methanogenesis performance parameters (volatile solids removal, CH4 recovery rate and %CH4 in the biogas), which were also related to longer SRT. The REs of several PhACs (naproxen, ketoprofen, ofloxacin, fenofibrate, trimethoprim, and atenolol) correlated positively (r > 0.75) with the relative abundances of specific bacterial and archaeal groups, suggesting their participation in biodegradation/biotransformation pathways.
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Affiliation(s)
- M J Gallardo-Altamirano
- Environmental Microbiology Group, Institute of Water Research, University of Granada, Granada, Spain; Department of Civil Engineering, University of Granada, Granada, Spain
| | - P Maza-Márquez
- Environmental Microbiology Group, Institute of Water Research, University of Granada, Granada, Spain; Department of Microbiology, University of Granada, Granada, Spain
| | - N Montemurro
- Water, Environmental and Food Chemistry (ENFOCHEM), Institute of Environmental Assessment and Water Research (IDAEA-CSIC), Barcelona, Spain
| | - S Pérez
- Water, Environmental and Food Chemistry (ENFOCHEM), Institute of Environmental Assessment and Water Research (IDAEA-CSIC), Barcelona, Spain
| | - B Rodelas
- Environmental Microbiology Group, Institute of Water Research, University of Granada, Granada, Spain; Department of Microbiology, University of Granada, Granada, Spain.
| | - F Osorio
- Environmental Microbiology Group, Institute of Water Research, University of Granada, Granada, Spain; Department of Civil Engineering, University of Granada, Granada, Spain
| | - C Pozo
- Environmental Microbiology Group, Institute of Water Research, University of Granada, Granada, Spain; Department of Microbiology, University of Granada, Granada, Spain
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7
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High-Solid Anaerobic Digestion: Reviewing Strategies for Increasing Reactor Performance. ENVIRONMENTS 2021. [DOI: 10.3390/environments8080080] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
High-solid and solid-state anaerobic digestion are technologies capable of achieving high reactor productivity. The high organic load admissible for this type of configuration makes these technologies an ideal ally in the conversion of waste into bioenergy. However, there are still several factors associated with these technologies that result in low performance. The economic model based on a linear approach is unsustainable, and changes leading to the development of a low-carbon model with a high degree of circularity are necessary. Digestion technology may represent a key driver leading these changes but it is undeniable that the profitability of these plants needs to be increased. In the present review, the digestion process under high-solid-content configurations is analyzed and the different strategies for increasing reactor productivity that have been studied in recent years are described. Percolating reactor configurations and the use of low-cost adsorbents, nanoparticles and micro-aeration seem the most suitable approaches to increase volumetric production and reduce initial capital investment costs.
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8
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Pöther DC, Schneider D, Prott U, Karmann J, Klug K, Heubach N, Hebisch R, Jäckel U. Multiplexed Workplace Measurements in Biogas Plants Reveal Compositional Changes in Aerosol Properties. Ann Work Expo Health 2021; 65:1061-1074. [PMID: 34219143 PMCID: PMC8577234 DOI: 10.1093/annweh/wxab036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 04/20/2021] [Accepted: 05/04/2021] [Indexed: 11/13/2022] Open
Abstract
Anaerobic digestion is an emerging technology producing energy from renewable resources or food waste. Exposure screenings, comprising hazardous substances and biological agents, at different workplaces are necessary for a comprehensive overview of potential hazards in order to assess the risk of employees in biogas plants. In order to analyse these parameters, workplace measurements were conducted in seven full-scale anaerobic digesters. Personal and stationary sampling was performed for inhalable and respirable particles, volatile organic compounds, ammonia, hydrogen sulphide, carbon monoxide, and carbon dioxide. Furthermore, concentrations of the total cell count, endotoxins, and fungi—down to species level—were determined in comparison to windward air. Sequencing of the 16S rRNA genes was utilized for the determination of the bacterial composition inside the biogas plants. Measurements of hazardous substances show hardly values reaching the specific occupational exposure limit value, except ammonia. An approximate 5-fold increase in the median of the total cell count, 15-fold in endotoxins, and 4-fold in fungi was monitored in the biogas plants compared with windward air. Specifying the comparison to selected workplaces showed the highest concentrations of these parameters for workplaces related to delivery and cleaning. Strikingly, the fungal composition drastically changed between windward air and burdened workplaces with an increase of Aspergillus species up to 250-fold and Penicillium species up to 400-fold. Sequence analyses of 16S rRNA genes revealed that many workplaces are dominated by the order of Bacillales or Lactobacillales, but many sequences were not assignable to known bacteria. Although significant changes inside the biogas plant compared with windward air were identified, that increase does not suggest stricter occupational safety measures at least when applying German policies. However, exposure to biological agents revealed wide ranges and specific workplace measurements should be conducted for risk assessment.
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Affiliation(s)
- Dierk-Christoph Pöther
- Unit for Biological Agents, Federal Institute for Occupational Safety and Health, Nöldnerstr. 40-42, 10317 Berlin, Germany
| | - Daniela Schneider
- Unit for Biological Agents, Federal Institute for Occupational Safety and Health, Nöldnerstr. 40-42, 10317 Berlin, Germany
| | - Ulrich Prott
- Unit for Measurement of Hazardous Substances, Federal Institute for Occupational Safety and Health, Friedrich-Henkel-Weg 1-25, 44149 Dortmund, Germany
| | - Jörg Karmann
- Unit for Measurement of Hazardous Substances, Federal Institute for Occupational Safety and Health, Friedrich-Henkel-Weg 1-25, 44149 Dortmund, Germany
| | - Kerstin Klug
- Unit for Biological Agents, Federal Institute for Occupational Safety and Health, Nöldnerstr. 40-42, 10317 Berlin, Germany
| | - Nancy Heubach
- Unit for Biological Agents, Federal Institute for Occupational Safety and Health, Nöldnerstr. 40-42, 10317 Berlin, Germany
| | - Ralph Hebisch
- Unit for Measurement of Hazardous Substances, Federal Institute for Occupational Safety and Health, Friedrich-Henkel-Weg 1-25, 44149 Dortmund, Germany
| | - Udo Jäckel
- Unit for Biological Agents, Federal Institute for Occupational Safety and Health, Nöldnerstr. 40-42, 10317 Berlin, Germany
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9
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Patil SM, Kurade MB, Basak B, Saha S, Jang M, Kim SH, Jeon BH. Anaerobic co-digester microbiome during food waste valorization reveals Methanosaeta mediated methanogenesis with improved carbohydrate and lipid metabolism. BIORESOURCE TECHNOLOGY 2021; 332:125123. [PMID: 33862385 DOI: 10.1016/j.biortech.2021.125123] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 03/27/2021] [Accepted: 03/30/2021] [Indexed: 06/12/2023]
Abstract
This study determines the optimum food waste (FW) loading in an anaerobic digester for methane production. Interrelation between the degradation mechanism and microbial community composition was assessed through in-depth metabolic pathway analysis and gene quantification. Higher methane production and short lag phase were observed in the FW reactors with low substrate loadings (<4% v/v) while extended lag phase and incomplete substrate utilization were observed in the reactors fed with higher substrates (>6% v/v). The long-chain fatty acids (LCFAs) degradation was influenced by initial FW loading, and up to 99% LCFA degradation occurred at 4% FW reactor. The addition of 8 to 10% FW substrate inhibited methanogenesis due to the accumulation of volatile fatty acids (VFA) and low LCFA degradation. Under optimal conditions of substrate loading, Methanosaeta and Methanosarcina were abundant, indicating their role in methanogenesis and syntrophic acetogenesis, along with enhanced metabolic pathways specific for carbohydrate and lipid metabolism.
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Affiliation(s)
- Swapnil M Patil
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Mayur B Kurade
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Bikram Basak
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Shouvik Saha
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Min Jang
- Department of Environmental Engineering, Kwangwoon University, Seoul 01897, South Korea
| | - Sang-Hyoun Kim
- Department of Civil and Environmental Engineering, Yonsei University, Seoul 03722, South Korea
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea.
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10
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Basak B, Patil SM, Saha S, Kurade MB, Ha GS, Govindwar SP, Lee SS, Chang SW, Chung WJ, Jeon BH. Rapid recovery of methane yield in organic overloaded-failed anaerobic digesters through bioaugmentation with acclimatized microbial consortium. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 764:144219. [PMID: 33421748 DOI: 10.1016/j.scitotenv.2020.144219] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 11/27/2020] [Accepted: 11/29/2020] [Indexed: 06/12/2023]
Abstract
Acidification during anaerobic digestion (AD) due to organic overloading is one of the major reasons for process failures and decreased methane productivity in anaerobic digesters. Process failures can cause the anaerobic digesters to stall completely, prolong the digester recovery period, and inflict an increased operational cost on wastewater treatment plants and adverse impacts on the environment. This study investigated the efficacy of bioaugmentation by using acclimatized microbial consortium (AC) in recovering anaerobic digesters stalled due to acidosis. Overloading of digesters with food waste leachate (FWL) led to the accumulation of volatile fatty acids (11.30 g L-1) and a drop in pH (4.67), which resulted in process failure and a 22-fold decline in cumulative methane production compared to that in the initial phase. In the failure phase, the syntrophic and methanogenic activities of the anaerobic digester microbiota were disrupted by a significant decrease in the abundance of syntrophic populations such as Syntrophomonas, Syntrophorhabdus, Sedimentibacter, and Levilinea, and the phylum Euryarchaeota. Bioaugmentation of the failed digesters by adding AC along with the adjustment of pH resulted in the prompt recovery of methane productivity with a 15.7-fold higher yield than that in unaugmented control. The abundance of syntrophic bacteria Syntrophomonas and phylum Euryarchaeota significantly increased by 29- and 17-fold in the recovered digesters, respectively, which showed significant positive correlations with methane productivity. Methanosarcina and acetoclastic Methanosaeta played a major role in the recovery of the digesters; they were later replaced by hydrogenotrophic Methanoculleus. The increase in the abundance of genes associated with biomethanation contributed to digester recovery, according to the functional annotation of 16S rDNA amplicon data. Thus, bioaugmentation with AC could be a viable solution to recover digesters experiencing process failure due to organic overloading.
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Affiliation(s)
- Bikram Basak
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Swapnil M Patil
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Shouvik Saha
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Mayur B Kurade
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea.
| | - Geon-Soo Ha
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Sanjay P Govindwar
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Sean S Lee
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Soon Woong Chang
- Department of Environmental Energy Engineering, Kyonggi University, 154-42 Gwanggyosan-ro, Yeongtong-gu, Suwon-si, Gyeonggi-do 16227, Republic of Korea
| | - Woo Jin Chung
- Department of Environmental Energy Engineering, Kyonggi University, 154-42 Gwanggyosan-ro, Yeongtong-gu, Suwon-si, Gyeonggi-do 16227, Republic of Korea
| | - Byong-Hun Jeon
- Department of Earth Resources & Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea.
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11
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Spanoghe J, Grunert O, Wambacq E, Sakarika M, Papini G, Alloul A, Spiller M, Derycke V, Stragier L, Verstraete H, Fauconnier K, Verstraete W, Haesaert G, Vlaeminck SE. Storage, fertilization and cost properties highlight the potential of dried microbial biomass as organic fertilizer. Microb Biotechnol 2020; 13:1377-1389. [PMID: 32180337 PMCID: PMC7415357 DOI: 10.1111/1751-7915.13554] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 02/19/2020] [Accepted: 02/25/2020] [Indexed: 01/19/2023] Open
Abstract
The transition to sustainable agriculture and horticulture is a societal challenge of global importance. Fertilization with a minimum impact on the environment can facilitate this. Organic fertilizers can play an important role, given their typical release pattern and production through resource recovery. Microbial fertilizers (MFs) constitute an emerging class of organic fertilizers and consist of dried microbial biomass, for instance produced on effluents from the food and beverage industry. In this study, three groups of organisms were tested as MFs: a high-rate consortium aerobic bacteria (CAB), the microalga Arthrospira platensis ('Spirulina') and a purple non-sulfur bacterium (PNSB) Rhodobacter sp. During storage as dry products, the MFs showed light hygroscopic activity, but the mineral and organic fractions remained stable over a storage period of 91 days. For biological tests, a reference organic fertilizer (ROF) was used as positive control, and a commercial organic growing medium (GM) as substrate. The mineralization patterns without and with plants were similar for all MFs and ROF, with more than 70% of the organic nitrogen mineralized in 77 days. In a first fertilization trial with parsley, all MFs showed equal performance compared to ROF, and the plant fresh weight was even higher with CAB fertilization. CAB was subsequently used in a follow-up trial with petunia and resulted in elevated plant height, comparable chlorophyll content and a higher amount of flowers compared to ROF. Finally, a cost estimation for packed GM with supplemented fertilizer indicated that CAB and a blend of CAB/PNSB (85%/15%) were most cost competitive, with an increase of 6% and 7% in cost compared to ROF. In conclusion, as bio-based fertilizers, MFs have the potential to contribute to sustainable plant nutrition, performing as good as a commercially available organic fertilizer, and to a circular economy.
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Affiliation(s)
- Janne Spanoghe
- Research Group of Sustainable Energy, Air and Water Technology (DuEL)Department of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Oliver Grunert
- Greenyard Horticulture Belgium NVSkaldenstraat 7a9042GentBelgium
| | - Eva Wambacq
- Department of Plants and CropsFaculty of Bioscience EngineeringGhent UniversityV. Vaerwyckweg 19000GentBelgium
| | - Myrsini Sakarika
- Research Group of Sustainable Energy, Air and Water Technology (DuEL)Department of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Gustavo Papini
- Research Group of Sustainable Energy, Air and Water Technology (DuEL)Department of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Abbas Alloul
- Research Group of Sustainable Energy, Air and Water Technology (DuEL)Department of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Marc Spiller
- Research Group of Sustainable Energy, Air and Water Technology (DuEL)Department of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Veerle Derycke
- Department of Plants and CropsFaculty of Bioscience EngineeringGhent UniversityV. Vaerwyckweg 19000GentBelgium
| | | | | | | | - Willy Verstraete
- Avecom NVIndustrieweg 122P9032WondelgemBelgium
- Center for Microbial Ecology and TechnologyFaculty of Bioscience EngineeringGhent UniversityCoupure Links 6539000GentBelgium
| | - Geert Haesaert
- Department of Plants and CropsFaculty of Bioscience EngineeringGhent UniversityV. Vaerwyckweg 19000GentBelgium
| | - Siegfried E. Vlaeminck
- Research Group of Sustainable Energy, Air and Water Technology (DuEL)Department of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
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Siles JA, Michán C. Bacteria, archae, fungi and viruses: it takes a community to eliminate waste. Microb Biotechnol 2020; 13:892-894. [PMID: 31701639 PMCID: PMC7264746 DOI: 10.1111/1751-7915.13503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 10/09/2019] [Indexed: 11/28/2022] Open
Abstract
Importance of the microbiota communities for improving the efficiency in Waste Water Treatment Plants.
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Affiliation(s)
- José Angel Siles
- Departamento de Química Inorgánica e Ingeniería QuímicaUniversidad de CórdobaCampus Universitario de Rabanales, edificio Marie Curie C‐3, planta baja14071CórdobaSpain
| | - Carmen Michán
- Departamento de Bioquímica y Biología MolecularUniversidad de Córdoba Campus de Excelencia Internacional Agroalimentario CeiA3, Edificio Severo Ochoa C‐6, 2ª Planta14071CórdobaSpain
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Utilization of Food and Agricultural Residues for a Flexible Biogas Production: Process Stability and Effects on Needed Biogas Storage Capacities. ENERGIES 2019. [DOI: 10.3390/en12142678] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Biogas plants can contribute to future energy systems’ stability through flexible power generation. To provide power flexibly, a demand-oriented biogas supply is necessary, which may be ensured by applying flexible feeding strategies. In this study, the impacts of applying three different feeding strategies (1x, 3x and 9x feeding per day) on the biogas and methane production and process stability parameters were determined for a biogas plant with a focus on waste treatment. Two feedstocks that differed in (1) high fat and (2) higher carbohydrate content were investigated during semi-continuous fermentation tests. Measurements of the short chain fatty acids concentration, pH value, TVA/TIC ratio and total ammonium and ammonia content along with a molecular biology analysis were conducted to assess the effects on process stability. The results show that flexible biogas production can be obtained without negative impacts on the process performance and that production peaks in biogas and methane can be significantly shifted to another time by changing feeding intervals. Implementing the fermentation tests’ results into a biogas plant simulation model and an assessment of power generation scenarios focusing on peak-time power generation revealed a considerable reduction potential for the needed biogas storage capacity of up to 73.7%.
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