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Legierse A, Struik Q, Smith G, Echeveste Medrano MJ, Weideveld S, van Dijk G, Smolders AJP, Jetten M, Veraart AJ, Welte CU, Glodowska M. Nitrate-dependent anaerobic methane oxidation (N-DAMO) as a bioremediation strategy for waters affected by agricultural runoff. FEMS Microbiol Lett 2023; 370:fnad041. [PMID: 37170064 PMCID: PMC10214460 DOI: 10.1093/femsle/fnad041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 04/14/2023] [Accepted: 05/10/2023] [Indexed: 05/13/2023] Open
Abstract
Agricultural drainage ditches are subjected to high anthropogenic nitrogen input, leading to eutrophication and greenhouse gas emissions. Nitrate-dependent anaerobic methane oxidation (N-DAMO) could be a promising remediation strategy to remove methane (CH4) and nitrate (NO3-) simultaneously. Therefore, we aimed to evaluate the potential of N-DAMO to remove excess NO3- and decrease CH4 release from agricultural drainage ditches. Microcosm experiments were conducted using sediment and surface water collected from three different sites: a sandy-clay ditch (SCD), a freshwater-fed peatland ditch (FPD), and a brackish peatland ditch (BPD). The microcosms were inoculated with an N-DAMO enrichment culture dominated by Candidatus Methanoperedens and Candidatus Methylomirabilis and supplemented with 13CH4 and 15NO3-. A significant decrease in CH4 and NO3- concentration was only observed in the BPD sediment. In freshwater sediments (FPD and SCD), the effect of N-DAMO inoculation on CH4 and NO3- removal was negligible, likely because N-DAMO microorganisms were outcompeted by heterotrophic denitrifiers consuming NO3- much faster. Overall, our results suggest that bioaugmentation with N-DAMO might be a potential strategy for decreasing NO3- concentrations and CH4 emission in brackish ecosystems with increasing agricultural activities where the native microbial community is incapable of efficient denitrification.
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Affiliation(s)
- Annabel Legierse
- Department of Microbiology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
| | - Quinten Struik
- Aquatic Ecology and Environmental Biology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
| | - Garrett Smith
- Department of Microbiology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
| | | | | | - Gijs van Dijk
- Aquatic Ecology and Environmental Biology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
- B-WARE Research Centre, Nijmegen 6525 ED, The Netherlands
| | - Alfons J P Smolders
- Aquatic Ecology and Environmental Biology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
- B-WARE Research Centre, Nijmegen 6525 ED, The Netherlands
| | - Mike Jetten
- Department of Microbiology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
| | - Annelies J Veraart
- Aquatic Ecology and Environmental Biology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
| | - Cornelia U Welte
- Department of Microbiology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
| | - Martyna Glodowska
- Department of Microbiology, RIBES, Radboud University, Nijmegen, 6525 AJ, The Netherlands
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Sun P, Chen Y, Liu J, Xu Y, Zhou L, Wu Y. Periphytic biofilms function as a double-edged sword influencing nitrogen cycling in paddy fields. Environ Microbiol 2022; 24:6279-6289. [PMID: 36335557 DOI: 10.1111/1462-2920.16277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 11/01/2022] [Indexed: 11/07/2022]
Abstract
It remains unclear whether periphytic biofilms are beneficial to N cycling in paddy fields. Here, based on a national-scale field investigation covering 220 rice fields in China, the N accumulation potential of periphytic biofilms was found to decrease from 8.8 ± 2.4 to 4.5 ± 0.7 g/kg and 3.1 ± 0.6 g/kg with increasing habitat latitude and longitude, respectively. The difference in abundant and rare subcommunities likely accounts for their geo-difference in N accumulation potential. The N cycling pathways involved in periphytic biofilms inferred that soil N and N2 were two potential sources for N accumulation in periphytic biofilms. Meanwhile, some of the accumulated N may be lost via N2 , N2 O, NO, or NH3 outputs. Superficially, periphytic biofilms are double-edged swords to N cycling by increasing soil N through biological N fixation but accelerating greenhouse gas emissions. Essentially, augmented periphytic biofilms increased change of TN (ΔTN) content in paddy soil from -231.9 to 31.9 mg/kg, indicating that periphytic biofilms overall benefit N content enhancement in paddy fields. This study highlights the contribution of periphytic biofilms to N cycling in rice fields, thus, drawing attention to their effect on rice production and environmental security.
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Affiliation(s)
- Pengfei Sun
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Yin Chen
- School of Life Sciences, University of Warwick, Coventry, UK
| | - Junzhuo Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Ying Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Lei Zhou
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
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