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Kuo NIH, Perez-Concha O, Hanly M, Mnatzaganian E, Hao B, Di Sipio M, Yu G, Vanjara J, Valerie IC, de Oliveira Costa J, Churches T, Lujic S, Hegarty J, Jorm L, Barbieri S. Enriching Data Science and Health Care Education: Application and Impact of Synthetic Data Sets Through the Health Gym Project. JMIR MEDICAL EDUCATION 2024; 10:e51388. [PMID: 38227356 PMCID: PMC10828942 DOI: 10.2196/51388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 10/20/2023] [Accepted: 11/08/2023] [Indexed: 01/17/2024]
Abstract
Large-scale medical data sets are vital for hands-on education in health data science but are often inaccessible due to privacy concerns. Addressing this gap, we developed the Health Gym project, a free and open-source platform designed to generate synthetic health data sets applicable to various areas of data science education, including machine learning, data visualization, and traditional statistical models. Initially, we generated 3 synthetic data sets for sepsis, acute hypotension, and antiretroviral therapy for HIV infection. This paper discusses the educational applications of Health Gym's synthetic data sets. We illustrate this through their use in postgraduate health data science courses delivered by the University of New South Wales, Australia, and a Datathon event, involving academics, students, clinicians, and local health district professionals. We also include adaptable worked examples using our synthetic data sets, designed to enrich hands-on tutorial and workshop experiences. Although we highlight the potential of these data sets in advancing data science education and health care artificial intelligence, we also emphasize the need for continued research into the inherent limitations of synthetic data.
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Affiliation(s)
- Nicholas I-Hsien Kuo
- Centre for Big Data Research in Health, The University of New South Wales, Sydney, Australia
| | - Oscar Perez-Concha
- Centre for Big Data Research in Health, The University of New South Wales, Sydney, Australia
| | - Mark Hanly
- Centre for Big Data Research in Health, The University of New South Wales, Sydney, Australia
| | | | - Brandon Hao
- The University of New South Wales, Sydney, Australia
| | | | - Guolin Yu
- The University of New South Wales, Sydney, Australia
| | - Jash Vanjara
- The University of New South Wales, Sydney, Australia
| | | | - Juliana de Oliveira Costa
- Medicines Intelligence Research Program, School of Population Health, The University of New South Wales, Sydney, Australia
| | - Timothy Churches
- School of Clinical Medicine, University of New South Wales, Sydney, Australia
- Ingham Institute of Applied Medical Research, Liverpool, Sydney, Australia
| | - Sanja Lujic
- Centre for Big Data Research in Health, The University of New South Wales, Sydney, Australia
| | - Jo Hegarty
- Sydney Local Health District, Sydney, Australia
| | - Louisa Jorm
- Centre for Big Data Research in Health, The University of New South Wales, Sydney, Australia
| | - Sebastiano Barbieri
- Centre for Big Data Research in Health, The University of New South Wales, Sydney, Australia
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