Analysis of dental homologies and phylogeny of Paucituberculata (Mammalia: Marsupialia)

Review of the extinct ‘shrew-opossums’ (Marsupialia: Caenolestidae), with descriptions of two new genera and three new species from the Early Miocene of southern South America

We present a systematic review of the extinct species included in the family Caenolestidae, one of the few South American metatherian groups that has survived to the present. We perform a cladistic analysis based on a data matrix consisting of all extant and extinct species that have been referred to this family, 100 morphological characters and two sets of molecular data (cytochrome b and cytochrome c oxidase I). Morphological and molecular data were analysed separately and in combination, under maximum parsimony and maximum likelihood methods. As a result, caenolestids are recovered as a monophyletic group within which we formally recognize three new taxa: Caenolestoides miocaenicus gen. & sp. nov., Gaimanlestes pascuali gen. & sp. nov. and Stilotherium parvum sp. nov. from the Early Miocene of Patagonia, Argentina. Stilotherium is the earliest diverging lineage of caenolestids followed by Gaimanlestes, while C. miocaenicus was recovered as the extinct species most closely related to extant caenolestids.

Amazonia as the Origin and Diversification Area of Didelphidae (Mammalia: Metatheria), and a Review of the Fossil Record of the Clade

Didelphidae is the largest New World radiation of marsupials, and is mostly represented by arboreal, small- to medium-sized taxa that inhabit tropical and/or subtropical forests. The group originated and remained isolated in South America for millions of years, until the formation of the Isthmus of Panama. In this study, we present the first reconstruction of the biogeographic history of Didelphidae including all major clades, based on parametric models and stratified analyses over time. We also compiled all the pre-Quaternary fossil records of the group, and contrasted these data to our biogeographic inferences, as well as to major environmental events that occurred in the South American Cenozoic. Our results indicate the relevance of Amazonia in the early diversification of Didelphidae, including the divergence of the major clades traditionally ranked as subfamilies and tribes. Cladogeneses in other areas started in the late Miocene, an interval of intense shifts, especially in the northern portion of Andes and Amazon Basin. Occupation of other areas continued through the Pliocene, but few were only colonized in Quaternary times. The comparison between the biogeographic inference and the fossil records highlights some further steps towards better understanding the spatiotemporal evolution of the clade. Finally, our results stress that the early history of didelphids is obscured by the lack of Paleogene fossils, which are still to be unearthed from low-latitude deposits of South America.

Variability and variation in Rhyncholestes raphanurus Osgood (Paucituberculata, Caenolestidae)

Background

Caenolestids are a group of poorly known South American marsupials with a restricted distribution in Páramo and Subpáramo environments of the Andes from Colombia and western Venezuela to Bolivia (represented by the genera Caenolestes and Lestoros), and Valdivian rainforest in southern Chile (including a separate population in Chiloé Island) and Argentina, where a single species lives: the Long-nosed shrew opossum (Rhyncholestes raphanurus). The objectives of this work were to analyze the intraspecific variability of R. raphanurus, which includes an anatomical description of the skull and dentition, describe its geographic variation, test for sexual dimorphism, and assess potential differences between continental and Island populations.

Methods

Linear Mossimann-transformed variables were used to assess sexual differences within a large population (La Picada), compare sexes within other continental populations, and in a separate analysis, compare continental from Island samples. A full model Principal Components Analysis was performed to assess differences between males and females of the continental and Island populations. A thorough description of the skull and teeth of the species and comparisons with other living Caenolestidae is presented.

Results

Rhyncholestes raphanurus presents little geographic variation, even between Island and continental populations. Similarly, we found no significant difference between sexes of this species in cranial and dental measurements. We provide a detailed description of cranial morphology and its variation, and also, the first description of the occipital bones, which haven’t been previously described for any Paucituberculata.

Conclusions

Comparative studies of continental and Chiloé Island specimens support the treatment of R. raphanurus as a single valid species, especially since morphologic and morphometric differences fall within the extremes of continental populations. The morphology of R. raphanurus clearly separates this genus from other extant Caenolestidae, and in a much greater degree than the differences found between Lestoros and Caenolestes.

The Skull of Epidolops ameghinoi from the Early Eocene Itaboraí Fauna, Southeastern Brazil, and the Affinities of the Extinct Marsupialiform Order Polydolopimorphia

The skull of the polydolopimorphian marsupialiform Epidolops ameghinoi is described in detail for the first time, based on a single well-preserved cranium and associated left and right dentaries plus additional craniodental fragments, all from the early Eocene (53–50 million year old) Itaboraí fauna in southeastern Brazil. Notable craniodental features of E. ameghinoi include absence of a masseteric process, very small maxillopalatine fenestrae, a prominent pterygoid fossa enclosed laterally by a prominent ectopterygoid crest, an absent or tiny transverse canal foramen, a simple, planar glenoid fossa, and a postglenoid foramen that is immediately posterior to the postglenoid process. Most strikingly, the floor of the hypotympanic sinus was apparently unossified, a feature found in several stem marsupials but absent in all known crown marsupials. “Type II” marsupialiform petrosals previously described from Itaboraí plausibly belong to E. ameghinoi; in published phylogenetic analyses, these petrosals fell outside (crown-clade) Marsupialia. “IMG VII” tarsals previously referred to E. ameghinoi do not share obvious synapomorphies with any crown marsupial clade, nor do they resemble those of the only other putative polydolopimorphians represented by tarsal remains, namely the argyrolagids. Most studies have placed Polydolopimorphia within Marsupialia, related to either Paucituberculata, or to Microbiotheria and Diprotodontia. However, diprotodonty almost certainly evolved independently in polydolopimorphians, paucituberculatans and diprotodontians, and Epidolops does not share obvious synapomorphies with any marsupial order. Epidolops is dentally specialized, but several morphological features appear to be more plesiomorphic than any crown marsupial. It seems likely Epidolops that falls outside Marsupialia, as do morphologically similar forms such as Bonapartherium and polydolopids. Argyrolagids differ markedly in their known morphology from Epidolops but share some potential apomorphies with paucituberculatans. It is proposed that Polydolopimorphia as currently recognised is polyphyletic, and that argyrolagids (and possibly other taxa currently included in Argyrolagoidea, such as groeberiids and patagoniids) are members of Paucituberculata. This hypothesis is supported by Bayesian non-clock phylogenetic analyses of a total evidence matrix comprising DNA sequence data from five nuclear protein-coding genes, indels, retroposon insertions, and morphological characters: Epidolops falls outside Marsupialia, whereas argyrolagids form a clade with the paucituberculatans Caenolestes and Palaeothentes, regardless of whether the Type II petrosals and IMG VII tarsals are used to score characters for Epidolops or not. There is no clear evidence for the presence of crown marsupials at Itaboraí, and it is possible that the origin and early evolution of Marsupialia was restricted to the “Austral Kingdom” (southern South America, Antarctica, and Australia).

Sampling diverse characters improves phylogenies: Craniodental and postcranial characters of vertebrates often imply different trees

Morphological cladograms of vertebrates are often inferred from greater numbers of characters describing the skull and teeth than from postcranial characters. This is either because the skull is believed to yield characters with a stronger phylogenetic signal (i.e., contain less homoplasy), because morphological variation therein is more readily atomized, or because craniodental material is more widely available (particularly in the palaeontological case). An analysis of 85 vertebrate datasets published between 2000 and 2013 confirms that craniodental characters are significantly more numerous than postcranial characters, but finds no evidence that levels of homoplasy differ in the two partitions. However, a new partition test, based on tree-to-tree distances (as measured by the Robinson Foulds metric) rather than tree length, reveals that relationships inferred from the partitions are significantly different about one time in three, much more often than expected. Such differences may reflect divergent selective pressures in different body regions, resulting in different localized patterns of homoplasy. Most systematists attempt to sample characters broadly across body regions, but this is not always possible. We conclude that trees inferred largely from either craniodental or postcranial characters in isolation may differ significantly from those that would result from a more holistic approach. We urge the latter.

Observations on the behavior of Caenolestes fuliginosus (Tomes, 1863) (Marsupialia, Paucituberculata, Caenolestidae) in captivity

We describe the behavior in captivity of the dusky shrew-opossum Caenolestes fuliginosus from 17 specimens captured at Finca La Martinica (Colombia), which were kept alive in plastic terraria for different periods of time (between 1 and 12 consecutive days). We found that C. fuliginosus can climb and jump well and uses its nonprehensile tail as a support when climbing. Feeding observations showed a preference towards an animalivorous diet, which included moths/butterflies (Insecta, Lepidoptera), stick-insects (Insecta, Phasmatoidea), flatworms (Platyhelminthes, Turbellaria), earthworms (Annelida, Oligochaeta), frogs (Amphibia, e.g., Pristimantis sp.), and dead rodents (Rodentia, Sigmodontinae, e.g., Microryzomys sp., Thomasomys sp.). Individuals were active throughout the day and night, with no indication of daily torpor. Our observations showed C. fuliginosus is not aggressive towards congeners and often aggregates during rest, especially when several individuals are placed together. Unlike other New World marsupials, C. fuliginosus showed nonagonistic group feeding behavior when consuming carcasses. Stereotyped behavior patterns (e.g., grooming) were not frequently observed. Our work provides comparative information for further studies on caenolestids and other New World marsupials.

En este trabajo describimos el comportamiento en cautiverio del ratón Runcho, Caenolestes fuliginosus, a partir de la observación directa de 17 individuos capturados en Finca La Martinica (Colombia), que fueron mantenidos en terrarios plásticos por diferentes períodos de tiempo (entre 1 y 12 días consecutivos). Observamos que C. fuliginosus puede trepar y saltar bien, usando su cola no prensil como soporte al trepar. Los individuos mostraron preferencias alimenticias hacia una dieta animalívora que incluyó: polillas/mariposas (Insecta, Lepidoptera), insectos palo (Insecta, Phasmatoidea), gusanos planos de vida libre (Platyhelminthes, Turbellaria), lombrices (Annelida, Oligochaeta), ranas/sapos (Amphibia, e.g., Pristimantis sp.) y roedores muertos (Rodentia, Sigmodontinae, e.g., Microryzomys sp., Thomasomys sp.). Observamos actividad durante todo el día y la noche, sin preferencias, y no observamos torpor en ningún individuo. Los individuos no mostraron comportamiento agresivo hacia sus congéneres y, con frecuencia, se juntaron para descansar unos sobre otros. A diferencia de otros marsupiales del nuevo mundo, C. fuliginosus no mostró comportamiento agonístico cuando se alimenta de cadáveres. Patrones estereotipados de comportamiento (e.g., limpieza) no fueron frecuentemente observados. Nuestro trabajo aporta información comparativa para futuros estudios sobre el comportamiento de otros cenoléstidos y marsupiales del nuevo mundo.

Mammals from 'down under': a multi-gene species-level phylogeny of marsupial mammals (Mammalia, Metatheria)

Marsupials or metatherians are a group of mammals that are distinct in giving birth to young at early stages of development and in having a prolonged investment in lactation. The group consists of nearly 350 extant species, including kangaroos, koala, possums, and their relatives. Marsupials are an old lineage thought to have diverged from early therian mammals some 160 million years ago in the Jurassic, and have a remarkable evolutionary and biogeographical history, with extant species restricted to the Americas, mostly South America, and to Australasia. Although the group has been the subject of decades of phylogenetic research, the marsupial tree of life remains controversial, with most studies focusing on only a fraction of the species diversity within the infraclass. Here we present the first Methaterian species-level phylogeny to include 80% of the extant marsupial species and five nuclear and five mitochondrial markers obtained from Genbank and a recently published retroposon matrix. Our primary goal is to provide a summary phylogeny that will serve as a tool for comparative research. We evaluate the extent to which the phylogeny recovers current phylogenetic knowledge based on the recovery of “benchmark clades” from prior studies—unambiguously supported key clades and undisputed traditional taxonomic groups. The Bayesian phylogenetic analyses recovered nearly all benchmark clades but failed to find support for the suborder Phalagiformes. The most significant difference with previous published topologies is the support for Australidelphia as a group containing Microbiotheriidae, nested within American marsupials. However, a likelihood ratio test shows that alternative topologies with monophyletic Australidelphia and Ameridelphia are not significantly different than the preferred tree. Although further data are needed to solidify understanding of Methateria phylogeny, the new phylogenetic hypothesis provided here offers a well resolved and detailed tool for comparative analyses, covering the majority of the known species richness of the group.