1
|
Ambu J, Martínez-Solano Í, Suchan T, Hernandez A, Wielstra B, Crochet PA, Dufresnes C. Genomic phylogeography illuminates deep cyto-nuclear discordances in midwife toads (Alytes). Mol Phylogenet Evol 2023; 183:107783. [PMID: 37044190 DOI: 10.1016/j.ympev.2023.107783] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 03/28/2023] [Accepted: 04/06/2023] [Indexed: 04/14/2023]
Abstract
The advent of genomic methods allows us to revisit the evolutionary history of organismal groups for which robust phylogenies are still lacking, particularly in species complexes that frequently hybridize. In this study, we conduct RAD-sequencing (RAD-seq) analyses of midwife toads (genus Alytes), an iconic group of western Mediterranean amphibians famous for their parental care behavior, but equally infamous for the difficulties to reconstruct their evolutionary history. Through admixture and phylogenetic analyses of thousands of loci, we provide the most comprehensive phylogeographic framework for the A. obstetricans complex to date, as well as the first fully resolved phylogeny for the entire genus. As part of this effort, we carefully explore the influence of different sampling schemes and data filtering thresholds on tree reconstruction, showing that several, slightly different, yet robust topologies may be retrieved with small datasets obtained by stringent SNP calling parameters, especially when admixed individuals are included. In contrast, analyses of incomplete but larger datasets converged on the same phylogeny, irrespective of the reconstruction method used or the proportion of missing data. The Alytes tree features three Miocene-diverged clades corresponding to the proposed subgenera Ammoryctis (A. cisternasii), Baleaphryne (A. maurus, A. dickhilleni and A. muletensis), and Alytes (A. obstetricans complex). The latter consists of six evolutionary lineages, grouped into three clades of Pliocene origin, and currently delimited as two species: (1) A. almogavarii almogavarii and A. a. inigoi; (2) A. obstetricans obstetricans and A. o. pertinax; (3) A. o. boscai and an undescribed taxon (A. o. cf. boscai). These results contradict the mitochondrial tree, due to past mitochondrial captures in A. a. almogavarii (central Pyrenees) and A. o. boscai (central Iberia) by A. obstetricans ancestors during the Pleistocene. Patterns of admixture between subspecies appear far more extensive than previously assumed from microsatellites, causing nomenclatural uncertainties, and even underlying the reticulate evolution of one taxon (A. o. pertinax). All Ammoryctis and Baleaphryne species form shallow clades, so their taxonomy should remain stable. Amid the prevalence of cyto-nuclear discordance among terrestrial vertebrates and the usual lack of resolution of conventional nuclear markers, our study advocates for phylogeography based on next-generation sequencing, but also encourages properly exploring parameter space and sampling schemes when building and analyzing genomic datasets.
Collapse
Affiliation(s)
- Johanna Ambu
- LASER, College of Biology and the Environment, Nanjing Forestry University, Nanjing, People's Republic of China
| | - Íñigo Martínez-Solano
- Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
| | - Tomasz Suchan
- W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków, Poland
| | - Axel Hernandez
- LASER, College of Biology and the Environment, Nanjing Forestry University, Nanjing, People's Republic of China
| | - Ben Wielstra
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, The Netherlands
| | | | - Christophe Dufresnes
- LASER, College of Biology and the Environment, Nanjing Forestry University, Nanjing, People's Republic of China
| |
Collapse
|
2
|
Effect of natural abiotic soil vibrations, rainfall and wind on anuran calling behavior: a test with captive-bred midwife toads (Alytes obstetricans). J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2023; 209:105-113. [PMID: 36508004 PMCID: PMC9742647 DOI: 10.1007/s00359-022-01596-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 11/16/2022] [Accepted: 11/17/2022] [Indexed: 12/14/2022]
Abstract
Anurans are known to detect vibrations, but few studies explore relationships between vibrations and resultant behaviors. We studied the reaction of calling captive-bred male midwife toads (Alytes obstetricans) to the randomized playback of a vibrational crescendo stimulus train. We considered two sources of natural abiotic vibrational stimuli: rainfall and wind. Rainfall was expected to induce calling and wind was expected to inhibit it. Playback experiments with two synthetic tones (200 Hz and 300 Hz) tested the sensitivity to pure tones and could possibly reveal a hearing sensitivity trend between these frequencies. The toads did not increase call rate in response to rainfall vibrations and only one of the five wind stimulus levels caused a significant decrease in call rate. This limited response could be explained, because the tested toads came from a captive population, where emergence may not be mediated by rainfall vibrations. We found that A. obstetricans is highly sensitive to very low frequencies, which could explain the sensitivity observed to vibrational stimuli. Playback of a random crescendo stimulus train proves to be a valid approach for addressing behavioral questions. However, the use of a captive population may have been a limitation in the clarity of the results.
Collapse
|
3
|
Labra A, Reyes‐Olivares C, Moreno‐Gómez FN, Velásquez NA, Penna M, Delano PH, Narins PM. Geographic variation in the matching between call characteristics and tympanic sensitivity in the Weeping lizard. Ecol Evol 2021; 11:18633-18650. [PMID: 35003698 PMCID: PMC8717325 DOI: 10.1002/ece3.8469] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 11/28/2021] [Accepted: 12/02/2021] [Indexed: 11/21/2022] Open
Abstract
Effective communication requires a match among signal characteristics, environmental conditions, and receptor tuning and decoding. The degree of matching, however, can vary, among others due to different selective pressures affecting the communication components. For evolutionary novelties, strong selective pressures are likely to act upon the signal and receptor to promote a tight match among them. We test this prediction by exploring the coupling between the acoustic signals and auditory sensitivity in Liolaemus chiliensis, the Weeping lizard, the only one of more than 285 Liolaemus species that vocalizes. Individuals emit distress calls that convey information of predation risk to conspecifics, which may respond with antipredator behaviors upon hearing calls. Specifically, we explored the match between spectral characteristics of the distress calls and the tympanic sensitivities of two populations separated by more than 700 km, for which previous data suggested variation in their distress calls. We found that populations differed in signal and receptor characteristics and that this signal variation was explained by population differences in body size. No precise match occurred between the communication components studied, and populations differed in the degree of such correspondence. We suggest that this difference in matching between populations relates to evolutionary processes affecting the Weeping lizard distress calls.
Collapse
Affiliation(s)
- Antonieta Labra
- Department of BiosciencesCentre for Ecological and Evolutionary Synthesis (CEES)University of OsloOsloNorway
| | - Claudio Reyes‐Olivares
- Programa de Fisiología y BiofísicaInstituto de Ciencias BiomédicasFacultad de MedicinaUniversidad de ChileSantiago de ChileChile
| | - Felipe N. Moreno‐Gómez
- Departamento de Biología y QuímicaFacultad de Ciencias BásicasUniversidad Católica del MauleTalcaChile
| | - Nelson A. Velásquez
- Departamento de Biología y QuímicaFacultad de Ciencias BásicasUniversidad Católica del MauleTalcaChile
| | - Mario Penna
- Programa de Fisiología y BiofísicaInstituto de Ciencias BiomédicasFacultad de MedicinaUniversidad de ChileSantiago de ChileChile
| | - Paul H. Delano
- Departamento de NeurocienciaFacultad de MedicinaUniversidad de ChileSantiagoChile
- Centro Avanzado de Ingeniería Eléctrica y ElectrónicaAC3EUniversidad Técnica Federico Santa MaríaValparaísoChile
| | - Peter M. Narins
- Department of Integrative Biology & PhysiologyUniversity of California Los AngelesLos AngelesCaliforniaUSA
| |
Collapse
|
4
|
Caorsi V, Guerra V, Furtado R, Llusia D, Miron LR, Borges-Martins M, Both C, Narins PM, Meenderink SWF, Márquez R. Anthropogenic substrate-borne vibrations impact anuran calling. Sci Rep 2019; 9:19456. [PMID: 31857629 PMCID: PMC6923410 DOI: 10.1038/s41598-019-55639-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 11/20/2019] [Indexed: 11/10/2022] Open
Abstract
Anthropogenic disturbance is a major cause of the biodiversity crisis. Nevertheless, the role of anthropogenic substrate vibrations in disrupting animal behavior is poorly understood. Amphibians comprise the terrestrial vertebrates most sensitive to vibrations, and since communication is crucial to their survival and reproduction, they are a suitable model for investigating this timely subject. Playback tests were used to assess the effects of substrate vibrations produced by two sources of anthropogenic activity– road traffic and wind turbines– on the calling activity of a naïve population of terrestrial toads. In their natural habitat, a buried tactile sound transducer was used to emit simulated traffic and wind turbine vibrations, and changes in the toads’ acoustic responses were analyzed by measuring parameters important for reproductive success: call rate, call duration and dominant frequency. Our results showed a significant call rate reduction by males of Alytes obstetricans in response to both seismic sources, whereas other parameters remained stable. Since females of several species prefer males with higher call rates, our results suggest that anthropogenically derived substrate-borne vibrations could reduce individual reproductive success. Our study demonstrates a clear negative effect of anthropogenic vibrations on anuran communication, and the urgent need for further investigation in this area.
Collapse
Affiliation(s)
- Valentina Caorsi
- Programa de Pós-Graduação em Biologia Animal, Dep. de Zoologia, Inst. de Biociências, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves 9500, Porto Alegre, RS, 91540-000, Brazil. .,Research and Innovation Centre, Fondazione Edmund Mach, via Mach 1, S. Michele all'Adige, 38010, TN, Italy. .,Laboratório de Herpetologia e Comportamento Animal, Departamento de Ecologia, Inst. de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brazil.
| | - Vinicius Guerra
- Programa de Pós-Graduação em Ecologia e Manejo de Recursos Naturais, Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rio Branco, AC, Brazil.,Laboratório de Herpetologia e Comportamento Animal, Departamento de Ecologia, Inst. de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brazil
| | - Raíssa Furtado
- Programa de Pós-Graduação em Ecologia, Dep. de Ecologia, Inst. de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, CP 15007, RS, 91501-970, Brazil
| | - Diego Llusia
- Departamento de Ecología, Terrestrial Ecology Group, Universidad Autónoma de Madrid (UAM), C/Darwin 2, E-28049, Ciudad Universitaria de Cantoblanco, Madrid, Spain.,Laboratório de Herpetologia e Comportamento Animal, Departamento de Ecologia, Inst. de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brazil
| | - Lívia Roese Miron
- Curso de Ciências Biológicas, Universidade Federal de Santa Maria, Avenida Roraima, n 1000, 97105-900, Santa Maria, RS, Brazil
| | - Márcio Borges-Martins
- Programa de Pós-Graduação em Biologia Animal, Dep. de Zoologia, Inst. de Biociências, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves 9500, Porto Alegre, RS, 91540-000, Brazil
| | - Camila Both
- Departamento Interdisciplinar, Universidade Federal do Rio Grande do Sul, Campus Litoral Norte, Av. Tramandaí, 976, 95625-000, Imbé, RS, Brazil
| | - Peter M Narins
- Departments of Integrative Biology & Physiology, and Ecology & Evolutionary Biology, University of California Los Angeles, 621 Charles E. Young Drive S., Los Angeles, CA, 90095, USA
| | | | - Rafael Márquez
- Fonoteca Zoológica. Dept. de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales-CSIC, José Gutiérrez Abascal 2, 28006, Madrid, Spain
| |
Collapse
|
5
|
Taylor RC, Akre K, Wilczynski W, Ryan MJ. Behavioral and neural auditory thresholds in a frog. Curr Zool 2019; 65:333-341. [PMID: 31263492 PMCID: PMC6595421 DOI: 10.1093/cz/zoy089] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 11/27/2018] [Indexed: 01/22/2023] Open
Abstract
Vocalizations play a critical role in mate recognition and mate choice in a number of taxa, especially, but not limited to, orthopterans, frogs, and birds. But receivers can only recognize and prefer sounds that they can hear. Thus a fundamental question linking neurobiology and sexual selection asks-what is the threshold for detecting acoustic sexual displays? In this study, we use 3 methods to assess such thresholds in túngara frogs: behavioral responses, auditory brainstem responses, and multiunit electrophysiological recordings from the midbrain. We show that thresholds are lowest for multiunit recordings (ca. 45 dB SPL), and then for behavioral responses (ca. 61 dB SPL), with auditory brainstem responses exhibiting the highest thresholds (ca. 71 dB SPL). We discuss why these estimates differ and why, as with other studies, it is unlikely that they should be the same. Although all of these studies estimate thresholds they are not measuring the same thresholds; behavioral thresholds are based on signal salience whereas the 2 neural assays estimate physiological thresholds. All 3 estimates, however, make it clear that to have an appreciation for detection and salience of acoustic signals we must listen to those signals through the ears of the receivers.
Collapse
Affiliation(s)
- Ryan C Taylor
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
- Department of Biological Sciences, Salisbury University, Salisbury, MD, USA
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama
| | - Karin Akre
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - Walter Wilczynski
- Neuroscience Institute and Center for Behavioral Neuroscience, Georgia State University, Atlanta, GA, USA
| | - Michael J Ryan
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama
| |
Collapse
|