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Ergin EK, Myung JJ, Lange PF. Statistical Testing for Protein Equivalence Identifies Core Functional Modules Conserved across 360 Cancer Cell Lines and Presents a General Approach to Investigating Biological Systems. J Proteome Res 2024; 23:2169-2185. [PMID: 38804581 PMCID: PMC11166143 DOI: 10.1021/acs.jproteome.4c00131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 05/04/2024] [Accepted: 05/17/2024] [Indexed: 05/29/2024]
Abstract
Quantitative proteomics has enhanced our capability to study protein dynamics and their involvement in disease using various techniques, including statistical testing, to discern the significant differences between conditions. While most focus is on what is different between conditions, exploring similarities can provide valuable insights. However, exploring similarities directly from the analyte level, such as proteins, genes, or metabolites, is not a standard practice and is not widely adopted. In this study, we propose a statistical framework called QuEStVar (Quantitative Exploration of Stability and Variability through statistical hypothesis testing), enabling the exploration of quantitative stability and variability of features with a combined statistical framework. QuEStVar utilizes differential and equivalence testing to expand statistical classifications of analytes when comparing conditions. We applied our method to an extensive data set of cancer cell lines and revealed a quantitatively stable core proteome across diverse tissues and cancer subtypes. The functional analysis of this set of proteins highlighted the molecular mechanism of cancer cells to maintain constant conditions of the tumorigenic environment via biological processes, including transcription, translation, and nucleocytoplasmic transport.
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Affiliation(s)
- Enes K. Ergin
- Department
of Pathology, University of British Columbia, Vancouver, British Columbia V6T 1Z7, Canada
- Michael
Cuccione Childhood Cancer Research Program, BC Children’s Hospital Research Institute, Vancouver, British Columbia V5Z 2H4, Canada
| | - Junia J.K. Myung
- Department
of Pathology, University of British Columbia, Vancouver, British Columbia V6T 1Z7, Canada
- Michael
Cuccione Childhood Cancer Research Program, BC Children’s Hospital Research Institute, Vancouver, British Columbia V5Z 2H4, Canada
| | - Philipp F. Lange
- Department
of Pathology, University of British Columbia, Vancouver, British Columbia V6T 1Z7, Canada
- Michael
Cuccione Childhood Cancer Research Program, BC Children’s Hospital Research Institute, Vancouver, British Columbia V5Z 2H4, Canada
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Böhm R, Jörling M, Reiter L, Fuchs C. People devalue generative AI's competence but not its advice in addressing societal and personal challenges. COMMUNICATIONS PSYCHOLOGY 2023; 1:32. [PMID: 39242905 PMCID: PMC11332189 DOI: 10.1038/s44271-023-00032-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 10/17/2023] [Indexed: 09/09/2024]
Abstract
The release of ChatGPT and related tools have made generative artificial intelligence (AI) easily accessible for the broader public. We conducted four preregistered experimental studies (total N = 3308; participants from the US) to investigate people's perceptions of generative AI and the advice it generates on how to address societal and personal challenges. The results indicate that when individuals are (vs. are not) aware that the advice was generated by AI, they devalue the author's competence but not the content or the intention to share and follow the advice on how to address societal challenges (Study 1) and personal challenges (Studies 2a and 2b). Study 3 further shows that individuals' preference to receive advice from AI (vs. human experts) increases when they gained positive experience with generative AI advice in the past. The results are discussed regarding the nature of AI aversion in the context of generative AI and beyond.
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Affiliation(s)
- Robert Böhm
- Faculty of Psychology, University of Vienna, Universitätsstrasse 7, 1010, Vienna, Austria.
- Department of Psychology and Copenhagen Center for Social Data Science (SODAS), University of Copenhagen, Øster Farimagsgade 2A, 1353, Copenhagen K, Denmark.
| | - Moritz Jörling
- Marketing Department, EMLyon Business School, 23 Av. Guy de Collongue, 69130, Écully, France
| | - Leonhard Reiter
- Faculty of Psychology, University of Vienna, Universitätsstrasse 7, 1010, Vienna, Austria
| | - Christoph Fuchs
- Faculty of Business, Economics, and Statistics, University of Vienna, Oskar-Morgenstern-Platz 1, 1090, Vienna, Austria
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Ruan Y, Byers-Heinlein K, Orena AJ, Polka L. Mixed-Language Input and Infant Volubility: Friend or Foe? BILINGUALISM (CAMBRIDGE, ENGLAND) 2023; 26:1051-1066. [PMID: 38187471 PMCID: PMC10769107 DOI: 10.1017/s1366728923000287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
Abstract
Language mixing is a common feature of many bilingually-raised children's input. Yet how it is related to their language development remains an open question. The current study investigated mixed-language input indexed by observed (30-second segment) counts and proportions in day-long recordings as well as parent-reported scores, in relation to infant vocal activeness (i.e., volubility) when infants were 10 and 18 months old. Results suggested infants who received a higher score or proportion of mixed input in one-on-one social contexts were less voluble. However, within contexts involving language mixing, infants who heard more words were also the ones who produced more vocalizations. These divergent associations between mixed input and infant vocal development point for a need to better understand the causal factors that drive these associations.
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Affiliation(s)
- Yufang Ruan
- School of Communication Sciences and Disorders, Faculty of Medicine and Health Sciences, McGill University, Montréal, Québec, Canada
- Centre for Research on Brain, Language and Music, Montréal, Québec, Canada
| | - Krista Byers-Heinlein
- Centre for Research on Brain, Language and Music, Montréal, Québec, Canada
- Department of Psychology, Concordia University, Montréal, Québec, Canada
- Centre for Research in Human Development, Concordia University, Montréal, Québec, Canada
| | - Adriel John Orena
- Department of Psychology, University of British Columbia, Vancouver, British Columbia, Canada
| | - Linda Polka
- School of Communication Sciences and Disorders, Faculty of Medicine and Health Sciences, McGill University, Montréal, Québec, Canada
- Centre for Research on Brain, Language and Music, Montréal, Québec, Canada
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Scheifele C, Steffens MC, Van Laar C. Which representations of their gender group affect men's orientation towards care? the case of parental leave-taking intentions. PLoS One 2021; 16:e0260950. [PMID: 34860838 PMCID: PMC8641870 DOI: 10.1371/journal.pone.0260950] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 11/19/2021] [Indexed: 12/03/2022] Open
Abstract
Men are currently underrepresented in traditionally female care-oriented (communal) engagement such as taking parental leave, whereas they are overrepresented in traditionally male (agentic) engagement such as breadwinning or leadership. We examined to what extent different prototypical representations of men affect men's self-reported parental leave-taking intentions and more generally the future they can imagine for themselves with regard to work and care roles (i.e., their possible selves). We expected prototypes of men that combine the two basic stereotype dimensions of agency and communion to increase men's communal intentions. In two experiments (N1 = 132, N2 = 233), we presented male participants with contrived newspaper articles that described the ideal man of today with varying degrees of agency and communion (between-subjects design with four conditions; combined agentic and communal vs. agentic vs. communal vs. control condition). Results of Experiment 1 were in line with the main hypothesis that especially presenting a combination of agency and communion increases men's expectations for communal engagement: As compared to a control condition, men expected more to engage in caretaking in the future, reported higher parental leave-taking intentions, and tended to expect taking longer parental leave. Experiment 2 only partially replicated these findings, namely for parental leave-taking intentions. Both experiments additionally provided initial evidence for a contrast effect in that an exclusive focus on agency also increased men's self-reported parental leave-taking intentions compared to the control condition. Yet, exclusively emphasizing communion in prototypes of men did not affect men's communal intentions, which were high to begin with. We further did not find evidence for preregistered mechanisms. We discuss conditions and explanations for the emergence of these mixed effects as well as implications for the communication of gendered norms and barriers to men's communal engagement more broadly.
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Affiliation(s)
- Carolin Scheifele
- Center for Social and Cultural Psychology, University of Leuven, Leuven, Belgium
- PhD Fellow of the Research Foundation–Flanders, Brussels, Belgium
- Department of Social, Environmental, and Economic Psychology, University of Koblenz-Landau, Landau, Germany
| | - Melanie C. Steffens
- Department of Social, Environmental, and Economic Psychology, University of Koblenz-Landau, Landau, Germany
| | - Colette Van Laar
- Center for Social and Cultural Psychology, University of Leuven, Leuven, Belgium
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Religion, parochialism and intuitive cooperation. Nat Hum Behav 2021; 5:512-521. [PMID: 33398149 DOI: 10.1038/s41562-020-01014-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Accepted: 11/16/2020] [Indexed: 12/28/2022]
Abstract
Religions promote cooperation, but they can also be divisive. Is religious cooperation intuitively parochial against atheists? Evidence supporting the social heuristics hypothesis (SHH) suggests that cooperation is intuitive, independent of religious group identity. We tested this prediction in a one-shot prisoner's dilemma game, where 1,280 practising Christian believers were paired with either a coreligionist or an atheist and where time limits were used to increase reliance on either intuitive or deliberated decisions. We explored another dual-process account of cooperation, the self-control account (SCA), which suggests that visceral reactions tend to be selfish and that cooperation requires deliberation. We found evidence for religious parochialism but no support for SHH's prediction of intuitive cooperation. Consistent with SCA but requiring confirmation in future studies, exploratory analyses showed that religious parochialism involves decision conflict and concern for strong reciprocity and that deliberation promotes cooperation independent of religious group identity. PROTOCOL REGISTRATION: The Stage 1 protocol for this Registered Report was accepted in principle on 28 January 2020. The protocol, as accepted by the journal, can be found at https://doi.org/10.6084/m9.figshare.12086781.v1 .
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