1
|
Cerna-Chávez E, Rodríguez-Rodríguez JF, García-Conde KB, Ochoa-Fuentes YM. Potential of Streptomyces avermitilis: A Review on Avermectin Production and Its Biocidal Effect. Metabolites 2024; 14:374. [PMID: 39057697 PMCID: PMC11278826 DOI: 10.3390/metabo14070374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 06/27/2024] [Accepted: 06/27/2024] [Indexed: 07/28/2024] Open
Abstract
Secondary metabolites produced by the fermentation of Streptomyces avermitilis bacterium are powerful antiparasitic agents used in animal health, agriculture and human infection treatments. Avermectin is a macrocyclic lactone with four structural components (A1, A2, B1, B2), each of them containing a major and a minor subcomponent, out of which avermectin B1a is the most effective parasitic control compound. Avermectin B1a produces two homologue avermectins (B1 and B2) that have been used in agriculture as pesticides and antiparasitic agents, since 1985. It has a great affinity with the Cl-channels of the glutamate receptor, allowing the constant flow of Cl- ions into the nerve cells, causing a phenomenon of hyperpolarization causing death by flaccid paralysis. The purpose of this work was to gather information on the production of avermectins and their biocidal effects, with special emphasis on their role in the control of pests and phytopathogenic diseases. The literature showed that S. avermitilis is an important producer of macrocyclic lactones with biocidal properties. In addition, avermectin contributes to the control of ectoparasites and endoparasites in human health care, veterinary medicine and agriculture. Importantly, avermectin is a compound that is harmless to the host (no side effects), non-target organisms and the environment.
Collapse
Affiliation(s)
- Ernesto Cerna-Chávez
- Departamento de Parasitología, Universidad Autónoma Agraria Antonio Narro, Calzada Antonio Narro 1923, Saltillo 25315, Coahuila, Mexico;
| | - José Francisco Rodríguez-Rodríguez
- Estudiante de Postgrado en Ciencias en Parasitología Agrícola, Universidad Autónoma Agraria Antonia Narro, Calzada Antonio Narro 1923, Saltillo 25315, Coahuila, Mexico;
| | - Karen Berenice García-Conde
- Estudiante de Postgrado en Ciencias en Parasitología Agrícola, Universidad Autónoma Agraria Antonia Narro, Calzada Antonio Narro 1923, Saltillo 25315, Coahuila, Mexico;
| | - Yisa María Ochoa-Fuentes
- Departamento de Parasitología, Universidad Autónoma Agraria Antonio Narro, Calzada Antonio Narro 1923, Saltillo 25315, Coahuila, Mexico;
| |
Collapse
|
2
|
Seipp K, Kammler C, Rossdam NO, Eckhardt P, Kiefer AM, Erkel G, Opatz T. Total Synthesis, Structure Reassignment, and Biological Evaluation of the Anti-Inflammatory Macrolactone 13-Hydroxy-14-deoxyoxacyclododecindione. JOURNAL OF NATURAL PRODUCTS 2024; 87:1131-1149. [PMID: 38555526 DOI: 10.1021/acs.jnatprod.4c00082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2024]
Abstract
Herein, the first total synthesis of natural 13-hydroxy-14-deoxyoxacyclododecindione along with the revision of the proposed configuration is reported. This natural product, initially discovered in 2018, belongs to the oxacyclododecindione family, renowned for their remarkable anti-inflammatory and antifibrotic activities. The synthetic route involves an esterification/Friedel-Crafts-acylation approach and uses various triol fragments. It allows the preparation of different stereoisomers, including the (revised) natural product, two threo-derivatives, and two Z-isomers of the endocyclic C═C double bond. Furthermore, a late-stage inversion of the C-13 stereocenter could transform the originally proposed structure into the revised natural product. With this comprehensive set of compounds and the previously prepared (13R,14S,15R)-isomer, deeper insights into their structural properties and biological activities were obtained. A detailed analysis of the final macrolactones using spectroscopy (NMR, IR, UV-vis) and X-ray crystallography gave new insights such as the significance of the optical rotation for the elucidation of their configuration and the light-induced E/Z double-bond photoisomerization. The pharmacological potential of the compounds was underlined by remarkably low IC50 values in biological assays addressing the inhibition of cellular inflammatory responses.
Collapse
Affiliation(s)
- Kevin Seipp
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Claudia Kammler
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Nils Ole Rossdam
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Paul Eckhardt
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Anna Maria Kiefer
- Department of Molecular Biotechnology & Systems Biology, RPTU Kaiserslautern-Landau, Paul-Ehrlich-Straße 23, Building 23, 67663 Kaiserslautern, Germany
| | - Gerhard Erkel
- Department of Molecular Biotechnology & Systems Biology, RPTU Kaiserslautern-Landau, Paul-Ehrlich-Straße 23, Building 23, 67663 Kaiserslautern, Germany
| | - Till Opatz
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| |
Collapse
|
3
|
Seipp K, Grölz V, Glass H, Quraishi E, Vierengel N, Opatz T. Total Synthesis of (±)-Oxacyclododecindione. J Org Chem 2024; 89:5746-5763. [PMID: 38597924 DOI: 10.1021/acs.joc.4c00333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
Racemic total synthesis of the natural product oxacyclododecindione, isolated in 2008 as the first member of the oxacyclododecindione family, is reported. Studies toward this molecule commenced with a biomimetic late-stage C-H oxidation starting from 14-deoxyoxacyclododecindione as a known precursor. This provided insights into the reactivity of the macrolactone class but did not permit the synthesis of the target natural product. Based on these results, a synthetic strategy through intramolecular Friedel-Crafts acylation combined with Barton decarboxylation to introduce the tertiary alcohol, a major challenge in previous synthetic efforts, was envisioned. This resulted in an 11-step racemic total synthesis of (±)-oxacyclododecindione, renowned for its potent anti-inflammatory and antifibrotic activities.
Collapse
Affiliation(s)
- Kevin Seipp
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Vincent Grölz
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Hagen Glass
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Elisabeth Quraishi
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Nina Vierengel
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Till Opatz
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| |
Collapse
|
4
|
Seipp K, Groß J, Kiefer AM, Erkel G, Opatz T. Total Synthesis and Biological Evaluation of the Anti-Inflammatory (13 R,14 S,15 R)-13-Hydroxy-14-deoxyoxacyclododecindione. JOURNAL OF NATURAL PRODUCTS 2023; 86:924-938. [PMID: 37001011 DOI: 10.1021/acs.jnatprod.2c01145] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
The first total synthesis of the natural product (13R,14S,15R)-13-hydroxy-14-deoxyoxacyclododecindione, which was isolated in 2018 as a member of the oxacyclododecindione family, is reported. A synthetic strategy through intramolecular Friedel-Crafts acylation combined with the stereoselective synthesis of a new triol key fragment allowed the preparation of the macrolactone. Due to mismatching physical data of the synthetic product, a revision of the configuration of the natural product isolated in 2018 is required. Light-induced E/Z-isomerism of the macrolactone backbone is described for the first time in the class of oxacyclododecindione-type macrolactones. The hydroxylated macrolactone prepared herein was found to show highly promising IC50 values in biological assays addressing the inhibition of inflammatory responses.
Collapse
Affiliation(s)
- Kevin Seipp
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Jonathan Groß
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Anna Maria Kiefer
- Department of Molecular Biotechnology & Systems Biology, University of Kaiserslautern, Erwin-Schrödinger Straße 70, Building 70, 67663 Kaiserslautern, Germany
| | - Gerhard Erkel
- Department of Molecular Biotechnology & Systems Biology, University of Kaiserslautern, Erwin-Schrödinger Straße 70, Building 70, 67663 Kaiserslautern, Germany
| | - Till Opatz
- Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, 55128 Mainz, Germany
| |
Collapse
|
5
|
Liang Q, Zheng J, Lu S, Wang H, Luo L, Zhang X, Peng J, Feng N, Ma A. Intramolecular Aerobic Ring Expansion of Cyclic Ketone: A Mild Method for the Synthesis of Medium‐Sized Lactones and Macrolactones. Adv Synth Catal 2022. [DOI: 10.1002/adsc.202200192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Qi‐Ming Liang
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Jing‐Yun Zheng
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Si‐Yuan Lu
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Hong‐Mei Wang
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Lu Luo
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Xiang‐Zhi Zhang
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Jin‐Bao Peng
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Na Feng
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Ai‐Jun Ma
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| |
Collapse
|
6
|
Shrestha UK, Golliher AE, Newar TD, Holguin FO, Maio WA. Asymmetric Total Synthesis and Revision of Absolute Stereochemistry for (+)-Taumycin A: An Approach that Exploits Orthogonally Protected Quasienantiomers. J Org Chem 2021; 86:11086-11099. [PMID: 33444024 DOI: 10.1021/acs.joc.0c02820] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The first asymmetric total synthesis of C(9)-S-(+)-taumycin A is now reported using an approach that targeted both C(9) diastereomers concurrently. To facilitate this work, we called upon the symmetrical nature of a C(5)-C(13) side-chain intermediate and exploited orthogonal protecting groups as a tactic to access both stereoisomers from a single chiral, nonracemic intermediate. In addition to our successful approach, several minor detours that helped refine our strategy and a detailed analysis of 1H NMR data will be discussed. Select compounds included in this work were screened against the NCI60 cell line panel and displayed modest growth inhibition activity.
Collapse
Affiliation(s)
| | | | | | | | - William A Maio
- New Mexico State University, Department of Chemistry and Biochemistry, Las Cruces, New Mexico 88003, United States
| |
Collapse
|
7
|
Zong G, Hu Z, Duah KB, Andrews LE, Zhou J, O'Keefe S, Whisenhunt L, Shim JS, Du Y, High S, Shi WQ. Ring Expansion Leads to a More Potent Analogue of Ipomoeassin F. J Org Chem 2020; 85:16226-16235. [PMID: 33264019 PMCID: PMC7808706 DOI: 10.1021/acs.joc.0c01659] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
![]()
Two
new ring-size-varying analogues (2 and 3) of ipomoeassin F were synthesized and evaluated. Improved cytotoxicity
(IC50: from 1.8 nM) and in vitro protein translocation
inhibition (IC50: 35 nM) derived from ring expansion imply
that the binding pocket of Sec61α (isoform 1) can accommodate
further structural modifications, likely in the fatty acid portion.
Streamlined preparation of the key diol intermediate 5 enabled gram-scale production, allowing us to establish that ipomoeassin
F is biologically active in vivo (MTD: ∼3 mg/kg).
Collapse
Affiliation(s)
- Guanghui Zong
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, United States
| | - Zhijian Hu
- Angion Biomedica Corp., 51 Charles Lindbergh Boulevard, Uniondale, New York 11553, United States
| | - Kwabena Baffour Duah
- Department of Chemistry, Ball State University, Muncie, Indiana 47306, United States
| | - Lauren E Andrews
- Department of Chemistry, Ball State University, Muncie, Indiana 47306, United States
| | - Jianhong Zhou
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Sarah O'Keefe
- School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, United Kingdom
| | - Lucas Whisenhunt
- Thermo Fisher Scientific, 6173 E. Old Marion Highway, Florence, South Carolina 29501, United States
| | - Joong Sup Shim
- Faculty of Health Sciences, University of Macau, Avenida da Universidade, 999078 Taipa, Macau SAR China
| | - Yuchun Du
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Stephen High
- School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, United Kingdom
| | - Wei Q Shi
- Department of Chemistry, Ball State University, Muncie, Indiana 47306, United States
| |
Collapse
|
8
|
Zin PPK, Williams GJ, Ekins S. Cheminformatics Analysis and Modeling with MacrolactoneDB. Sci Rep 2020; 10:6284. [PMID: 32286395 PMCID: PMC7156526 DOI: 10.1038/s41598-020-63192-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 03/24/2020] [Indexed: 12/26/2022] Open
Abstract
Macrolactones, macrocyclic lactones with at least twelve atoms within the core ring, include diverse natural products such as macrolides with potent bioactivities (e.g. antibiotics) and useful drug-like characteristics. We have developed MacrolactoneDB, which integrates nearly 14,000 existing macrolactones and their bioactivity information from different public databases, and new molecular descriptors to better characterize macrolide structures. The chemical distribution of MacrolactoneDB was analyzed in terms of important molecular properties and we have utilized three targets of interest (Plasmodium falciparum, Hepatitis C virus and T-cells) to demonstrate the value of compiling this data. Regression machine learning models were generated to predict biological endpoints using seven molecular descriptor sets and eight machine learning algorithms. Our results show that merging descriptors yields the best predictive power with Random Forest models, often boosted by consensus or hybrid modeling approaches. Our study provides cheminformatics insights into this privileged, underexplored structural class of compounds with high therapeutic potential.
Collapse
Affiliation(s)
- Phyo Phyo Kyaw Zin
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
- Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA
| | - Gavin J Williams
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
- Comparative Medicine Institute, North Carolina State University, Raleigh, NC, USA
| | - Sean Ekins
- Comparative Medicine Institute, North Carolina State University, Raleigh, NC, USA.
- Collaborations Pharmaceuticals, Inc., 840 Main Campus Drive, Lab 3510, Raleigh, NC, 27606, USA.
| |
Collapse
|
9
|
Reiss A, Maier ME. Synthesis of a Leiodermatolide Analogue with a Dienyl Side Chain. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800693] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Anita Reiss
- Institut für Organische Chemie; Eberhard Karls Universität Tübingen; Auf der Morgenstelle 18 72076 Tübingen Germany
| | - Martin E. Maier
- Institut für Organische Chemie; Eberhard Karls Universität Tübingen; Auf der Morgenstelle 18 72076 Tübingen Germany
| |
Collapse
|
10
|
Selwood DL. Macrocycles, the edge of drug-likeness chemical space or Goldilocks zone? Chem Biol Drug Des 2017; 89:164-168. [PMID: 28205398 DOI: 10.1111/cbdd.12922] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2016] [Accepted: 12/24/2016] [Indexed: 11/29/2022]
Affiliation(s)
- David L Selwood
- The Wolfson Institute for Biomedical Research, University College London, London, UK
| |
Collapse
|
11
|
Solinski AE, Koval AB, Brzozowski RS, Morrison KR, Fraboni AJ, Carson CE, Eshraghi AR, Zhou G, Quivey RG, Voelz VA, Buttaro BA, Wuest WM. Diverted Total Synthesis of Carolacton-Inspired Analogs Yields Three Distinct Phenotypes in Streptococcus mutans Biofilms. J Am Chem Soc 2017; 139:7188-7191. [PMID: 28502178 PMCID: PMC5891724 DOI: 10.1021/jacs.7b03879] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The oral microbiome is a dynamic environment inhabited by both commensals and pathogens. Among these is Streptococcus mutans, the causative agent of dental caries, the most prevalent childhood disease. Carolacton has remarkably specific activity against S. mutans, causing acid-mediated cell death during biofilm formation; however, its complex structure limits its utility. Herein, we report the diverted total synthesis and biological evaluation of a rationally designed library of simplified analogs that unveiled three unique biofilm phenotypes further validating the role of natural product synthesis in the discovery of new biological phenomena.
Collapse
Affiliation(s)
- Amy E. Solinski
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Alexander B. Koval
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Richard S. Brzozowski
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Kelly R. Morrison
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Americo J. Fraboni
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Carrie E. Carson
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Anisa R. Eshraghi
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Guangfeng Zhou
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Robert G. Quivey
- Center for Oral Biology, University of Rochester School of Medicine and Dentistry, Rochester New York 14642, United States
| | - Vincent A Voelz
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Bettina A. Buttaro
- Department of Microbiology and Immunology, Lewis Katz School of Medicine, Temple University, Philadelphia, Pennsylvania 19140, United States
| | - William M. Wuest
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| |
Collapse
|
12
|
Saint-Auret S, Abdelkafi H, Le Nouen D, Bisseret P, Blanchard N. Synthetic strategies towards mycolactone A/B, an exotoxin secreted by Mycobacterium ulcerans. Org Chem Front 2017. [DOI: 10.1039/c7qo00608j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Pitfalls and dead-ends pave the way to mycolactone A/B. This full account reports synthetic efforts towards this natural product that eventually culminated in a de novo total synthesis.
Collapse
Affiliation(s)
- Sarah Saint-Auret
- Université de Strasbourg
- CNRS
- Laboratoire de Chimie Moléculaire UMR 7509
- 67000 Strasbourg
- France
| | - Hajer Abdelkafi
- Université de Strasbourg
- CNRS
- Laboratoire de Chimie Moléculaire UMR 7509
- 67000 Strasbourg
- France
| | - Didier Le Nouen
- Université de Haute-Alsace
- Laboratoire de Chimie Organique et Bioorganique EA 4566
- 68093 Mulhouse Cedex
- France
| | - Philippe Bisseret
- Université de Strasbourg
- CNRS
- Laboratoire de Chimie Moléculaire UMR 7509
- 67000 Strasbourg
- France
| | - Nicolas Blanchard
- Université de Strasbourg
- CNRS
- Laboratoire de Chimie Moléculaire UMR 7509
- 67000 Strasbourg
- France
| |
Collapse
|