Frogs at the summits: phylogeny of the Andean frogs of the genusTelmatobius(Anura, Telmatobiidae) based on phenotypic characters

Transcriptome analysis reveals the genetic basis underlying the formation and seasonal changes of nuptial pads in Rana chensinensis

BACKGROUND

Nuptial pads, a typical sexually dimorphic trait in anurans, are located on the first digit of the male forelimb in Rana chensinensis and exhibit morphological changes synchronized with breeding cycles. However, the genetic mechanisms underlying its formation and seasonal changes remain poorly understood.

RESULTS

To identify genes and biological processes associated with the development and seasonal variations of nuptial pads, we conducted a comprehensive transcriptome analysis on nuptial pads and hind toe skin across both sexes at different breeding periods in R. chensinensis. We identified numerous sexually and seasonally differential expression genes in nuptial pads. Notably, genes including KRT, TRY, HPDB, AKR1C1, and AKR1C3 were identified as potential key regulators of keratinization and coloration variation in nuptial pads. We further examined gene co-expression modules closely linked to nuptial pad development. These modules contained genes involved in signal transduction, substance transport, cytoskeletal structure, energy metabolism, and protein modification, suggesting that the development of nuptial pads is a complex multifaceted regulatory process. Furthermore, genes in modules associated with pad development during the breeding season were primarily involved in apoptosis, steroid hormone synthesis, autophagy, and cytochrome P450 pathways, suggesting their pivotal role in pad formation. Additionally, key regulators of the cell cycle, such as FOXO4, PIK3C2A, and GSPT2, were implicated in influencing nuptial pad development by modulating cell differentiation and proliferation.

CONCLUSIONS

Our study provides a valuable reference for investigating the molecular basis of sexual dimorphism in R. chensinensis and other amphibian species more broadly.

Unravelling drivers on the morphological diversification of the terminal phalanx in hyloid frogs

The anuran locomotor system integrates traits that are influenced by phylogenetic, ecological, and development constraints. Given their significance to locomotion, we studied terminal phalange morphology in the Hyloidea group. We aim to deduce if morphological variability stems from phylogenetic, ecological, or life-cycle constraints. We explore the influence of size on variation and assess if evolutionary rates and shape disparities differ among the groups under consideration. Finally, we optimized phalangeal morphology within the phylogenetic framework to delineate evolutionary trends. We included 424 specimens of 128 species representing 17 families of Hyloidea and two of non-hyloid anurans. Configuration of the terminal phalanx was quantified using geometric morphometrics and characterized through qualitative traits. We established four categories based on microhabitats and locomotor abilities. Our life-cycle categorization distinguishes species by their consistent or changing microhabitat across larval and adult stages. The results show a complex scenario, where certain clades occupy distinct regions of morphospace, but there is also a relationship between phalangeal shape, microhabitats, and locomotor abilities. However, both the phylogenetic signal and the relationship with microhabitats and locomotor abilities are not particularly robust. Species inhabiting arboreal microhabitats develop convergent traits to thrive in this niche, such as rounded proximal epiphysis and the claw-shaped phalanx. Morphological disparity was higher in walkers, which also includes arboreal species, prompting further questions on the demands of locomotion in vertical substrates.

Back to the water: Tongue morphology associated to contrasting lifestyles in two Andean frogs of the genus Telmatobius

The evolution of the tongue in tetrapods is associated with feeding in the terrestrial environment. This study analyzes the tongue morphology of two closely related frog species, Telmatobius oxycephalus and T. rubigo, which exhibit contrasting feeding mechanisms. Telmatobius oxycephalus, a semi-aquatic species, relies on its tongue to capture terrestrial prey whereas T. rubigo, a secondarily aquatic species, uses suction feeding not involving the tongue. Through anatomical, histological and scanning electron microscopy analyses, we revealed remarkable differences in tongue morphology between these species. Telmatobius oxycephalus exhibits a well-developed tongue whose dorsal epithelium has numerous and slender filiform papillae. The epithelial cells of the papillae are protruded and have a complex array of microridges. In contrast, T. rubigo possesses a reduced tongue with flat and less numerous filiform papillae. The epithelial cells are completely flat and lack microridges. These findings highlight the remarkable adaptability of lingual morphology in Telmatobius to respond to the contrasting ecological niches and prey capture mechanisms. This study sheds light on the relationship between tongue shape and the different functional demands, contributing to our understanding of the evolution of prey capture mechanisms in amphibians.

Phylogeny of Telmatobius marmoratus complex (Anura, Telmatobiidae) reveals high cryptic diversity in the Andean Altiplano

Telmatobius is the most diverse group of anurans in the Andean Altiplano (highlands) Morphologically, these amphibians have a generally conserved morphology but in turn present large intraspecific variation, which has led to a complex taxonomy and systematics. T. marmoratus has the widest distribution of the genus and forms a complex composed of at least two Telmatobius species. Partial systematic studies based on molecular evidence reveal the existence of three lineages with a complex spatial distribution. However, these studies did not include the entire distribution of T. marmoratus. Our study aims to reassess the current systematic scenario including the complete distribution of the complex. For this, we used a multilocus approach based on mitochondrial (16S, Cytb) and nuclear (RAG1-1, BFIB) DNA sequences to build a phylogenetic hypothesis based on Bayesian inference, maximum likelihood and maximum parsimony. Subsequently, we performed single-locus (ABGD and PTP) and multilocus (STACEY) species delimitation analyses to verify the diversity of nominal species within the complex. The analyses suggest seven non-sibling lineages and 6-10 candidate species within the marmoratus complex. Only one of the two lineages restricted to the central northern plateau correspond to T. marmoratus sensu stricto. South-central marbled water frogs belong to completely new lineages closer to T. gigas and T. culeus, evidencing the polyphyletic condition of the marmoratus complex. The findings of several sympatric lineages in some localities reveal a complex history of ancient water connections in south-central Altiplano.

The definitive rediscovery of Telmatobiushalli (Anura, Telmatobiidae) at its historic type locality and its synonymy with T.dankoi and T.vilamensis

Telmatobiushalli was the first representative of its genus to be described exclusively for Chile, yet for 85 years no new individuals could be located due to the vagueness with which its type locality was described. The type series was collected by one of the members of the International High Altitude Expedition to Chile (IHAEC) of 1935. Recently, three studies successively claimed to have located the type locality in different places. The third study proved, according to the chronicles of the IHAEC, that the actual locality is Miño, at the origin of the Loa River, where currently there are no published records of Telmatobius. In this study, additional documentary antecedents and graphic material are provided that corroborate that Miño is indeed the type locality of T.halli. Additionally, the recently rediscovered Telmatobius population from Miño and the environment it inhabits are described. The external characteristics of the frogs are consistent with the description of T.halli. Furthermore, molecular phylogenetic analyses were performed that showed that T.halli, T.dankoi, and T.vilamensis, all known only from their type localities in Chile, comprise a clade without internal resolution. A detailed comparison of the diagnoses of the three species revealed that the few phenotypic differences between these taxa were based on characteristics that vary widely within and between populations of the genus, hence their conspecificity is proposed. The implications of this synonymy for the taxonomy, biogeography, and conservation of the Telmatobius from the extreme south of its distribution in Chile are discussed.

A solution to the enigma of the type locality of Telmatobiushalli Noble, 1938 (Anura, Telmatobiidae), a frog lost for 86 years

For 80 years, there were no sightings of the Andean frog, Telmatobiushalli, due to the ambiguity with which its type locality was described ("warm spring near Ollagüe", northern Chile). The type specimens were collected during the International High Altitude Expedition to Chile (IHAEC) in 1935 and were subsequently described in 1938. In 2018 and 2020, two studies independently reported the rediscovery of the species, but they reached different conclusions about its identity and geographic distribution. In fact, the populations identified as T.halli in those studies are more phylogenetically related to other species than to each other, so they clearly do not belong to the same taxon. Although the study of 2020 is more in line with the geographic information of the description, it does not consider some bibliographic details and the transport limitations of the IHAEC. Here, based on a detailed analysis of the chronicles of the IHAEC and other bibliographic sources, I first refute the proposals of the 2018 and 2020 studies and then provide a possible solution. The combined information from the chronicles indicates that the type locality of T.halli is found at the sources of the Loa River, a different place from those identified in the two previous studies. By also incorporating geographic information of the time, I conclude that its true type locality is Miño, an abandoned mining camp located near the origin of the Loa River, where currently no populations of the genus have been described.

Rampant tooth loss across 200 million years of frog evolution

Teeth are present in most clades of vertebrates but have been lost completely several times in actinopterygian fishes and amniotes. Using phenotypic data collected from over 500 genera via micro-computed tomography, we provide the first rigorous assessment of the evolutionary history of dentition across all major lineages of amphibians. We demonstrate that dentition is invariably present in caecilians and salamanders, but teeth have been lost completely more than 20 times in frogs, a much higher occurrence of edentulism than in any other vertebrate group. The repeated loss of teeth in anurans is associated with a specialized diet of small invertebrate prey as well as shortening of the lower jaw, but it is not correlated with a reduction in body size. Frogs provide an unparalleled opportunity for investigating the molecular and developmental mechanisms of convergent tooth loss on a large phylogenetic scale.

Unravelling interspecific relationships among highland lizards: first phylogenetic hypothesis using total evidence of the Liolaemus montanus group (Iguania: Liolaemidae)

The South American lizard genus Liolaemus comprises > 260 species, of which > 60 are recognized as members of the Liolaemus montanus group, distributed throughout the Andes in central Peru, Bolivia, Chile and central Argentina. Despite its great morphological diversity and complex taxonomic history, a robust phylogenetic estimate is still lacking for this group. Here, we study the morphological and molecular diversity of the L. montanus group and present the most complete quantitative phylogenetic hypothesis for the group to date. Our phylogeny includes 103 terminal taxa, of which 91 are members of the L. montanus group (58 are assigned to available species and 33 are of uncertain taxonomic status). Our matrix includes 306 morphological and ecological characters and 3057 molecular characters. Morphological characters include 48 continuous and 258 discrete characters, of which 70% (216) are new to the literature. The molecular characters represent five mitochondrial markers. We performed three analyses: a morphology-only matrix, a molecular-only matrix and a matrix including both morphological and molecular characters (total evidence hypothesis). Our total evidence hypothesis recovered the L. montanus group as monophyletic and included ≥ 12 major clades, revealing an unexpectedly complex phylogeny.

Development and characterization of 22 polymorphic microsatellites of the Andean frog Telmatobius chusmisensis (Anura, Telmatobius) and cross amplification in seven Chilean species of the genus

The genus Telmatobius Wiegmann, 1834 is composed of a wide variety of species and is one of the most diverse native components of the high-altitude Andean environments. The species of the genus present in Chile are considered as endangered, critically endangered or data deficient. We isolated and evaluated 44 microsatellites in 80 individuals of 8 species of Telmatobius present in Chile, obtaining 22 polymorphic microsatellite loci for Telmatobius chusmisensis. The cross-amplification test was successful in all other species tested. For the first time, microsatellite markers are described for Telmatobius. The description of these primers will be useful for further genetic studies for T. chusmisensis and other species of the same genus; allowing further analyses of population structuring, dispersal patterns, recent demographic history and population effective size. This information is also significant to undertake conservation actions for the species of the genus Telmatobius, since most species have conservation issues.

Phylogeny, time divergence, and historical biogeography of the South American Liolaemus alticolor-bibronii group (Iguania: Liolaemidae)

The genus Liolaemus comprises more than 260 species and can be divided in two subgenera: Eulaemus and Liolaemus sensu stricto. In this paper, we present a phylogenetic analysis, divergence times, and ancestral distribution ranges of the Liolaemus alticolor-bibronii group (Liolaemus sensu stricto subgenus). We inferred a total evidence phylogeny combining molecular (Cytb and 12S genes) and morphological characters using Maximum Parsimony and Bayesian Inference. Divergence times were calculated using Bayesian MCMC with an uncorrelated lognormal distributed relaxed clock, calibrated with a fossil record. Ancestral ranges were estimated using the Dispersal-Extinction-Cladogenesis (DEC-Lagrange). Effects of some a priori parameters of DEC were also tested. Distribution ranged from central Perú to southern Argentina, including areas at sea level up to the high Andes. The L. alticolor-bibronii group was recovered as monophyletic, formed by two clades: L. walkeri and L. gracilis, the latter can be split in two groups. Additionally, many species candidates were recognized. We estimate that the L. alticolor-bibronii group diversified 14.5 Myr ago, during the Middle Miocene. Our results suggest that the ancestor of the Liolaemus alticolor-bibronii group was distributed in a wide area including Patagonia and Puna highlands. The speciation pattern follows the South-North Diversification Hypothesis, following the Andean uplift.

Silent sounds in the Andes: underwater vocalizations of three frog species with reduced tympanic middle ears (Anura: Telmatobiidae: Telmatobius)

Underwater vocalization in anurans is restricted to a few, distantly related species. In some of them, sound is transmitted through tympanic and extra-tympanic pathways. Members of the Andean genus Telmatobius Wiegmann, 1834 lack a tympanic membrane, and earlier reports assumed the absence of vocalizations in the genus. We recorded underwater vocalizations and examined the middle-ear morphology in three species of Telmatobius with different lifestyles: Telmatobius oxycephalus Vellard, 1946 (semiaquatic, riverine); Telmatobius hintoni Parker, 1940 (markedly aquatic, riverine); Telmatobius culeus (Garman 1876) (fully aquatic, lacustrine). Males emit underwater calls, which in the three species are simple and stereotyped; they consist of a repeated train of notes, with a low fundamental frequency (309–941 Hz). In each of the three species, the tympanic membrane is absent and the tympanic cavity is extremely reduced or absent, whereas the opercular system is well developed. Our data, along with prior knowledge in other species of anurans, suggest that the species examined here probably perceived sound through extra-tympanic pathways. Given the limited knowledge about underwater calling in anurans, Telmatobius seems a logical candidate to study the functional and evolutionary bases of underwater hearing and tympanic middle-ear reduction in anurans.