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Tyagi A, Yadav N, Pandit A, Ramakrishnan U. On the road to losing connectivity: Faecal samples provide genome-wide insights into anthropogenic impacts on two large herbivore species in central India. Mol Ecol 2024; 33:e17461. [PMID: 38958291 DOI: 10.1111/mec.17461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 06/12/2024] [Accepted: 06/24/2024] [Indexed: 07/04/2024]
Abstract
Humans have impacted most of the planet, and the ensuing fragmentation results in small, isolated habitat patches posing a risk of genetic diversity loss, inbreeding, and genetic load. Understanding how natural and anthropogenic landscape features affect gene flow among habitat patches is critical for maintaining connectivity. Genome-wide data are required to comprehend the impacts of recent fragmentation, which can be challenging when only non-invasive samples are available. Here, we build upon advancements in conservation genomics to address connectivity of two large herbivores, gaur (Bos gaurus) and sambar (Rusa unicolor) in central India. Given their habitat associations, we expected these species to respond similarly to habitat fragmentation. We used faecal-DNA and methylation-based host-DNA enrichment with modified ddRAD protocol to generate genome-wide single-nucleotide polymorphism (SNP) data for 124 gaur and 99 sambar individuals. Our findings reveal that gaur populations in central India are fragmented, displaying high genetic differentiation, with drift significantly affecting small populations like Umred Karhandla Wildlife Sanctuary. Although sambar shows low genetic structure, another small population, Bor Tiger Reserve is genetically differentiated. Our results suggest that although land cover change and roads restrict animal movement, the extent of this impact varies across the two species. We show that different species respond differently to landscape features, even with similar habitat associations. We highlight small and isolated populations requiring urgent conservation intervention. Such multi-species approaches enhance our understanding of cross-species connectivity patterns. We suggest shifting from single-species to multi-species holistic conservation approach in rapidly developing landscapes to better manage co-occurring endangered species.
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Affiliation(s)
- Abhinav Tyagi
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
- SASTRA Deemed to be University, Thanjavur, India
| | - Nidhi Yadav
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - Awadhesh Pandit
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - Uma Ramakrishnan
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
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Robin VV. Population genetics of animals in the wild to aid conservation: Uma Ramakrishnan-Recipient of the 2023 Molecular Ecology Prize. Mol Ecol 2024; 33:e17290. [PMID: 38339857 DOI: 10.1111/mec.17290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 01/13/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024]
Affiliation(s)
- V V Robin
- IISER Tirupati, Tirupati, Andhra Pradesh, India
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3
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Palm EC, Landguth EL, Holden ZA, Day CC, Lamb CT, Frame PF, Morehouse AT, Mowat G, Proctor MF, Sawaya MA, Stenhouse G, Whittington J, Zeller KA. Corridor-based approach with spatial cross-validation reveals scale-dependent effects of geographic distance, human footprint and canopy cover on grizzly bear genetic connectivity. Mol Ecol 2023; 32:5211-5227. [PMID: 37602946 DOI: 10.1111/mec.17098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Revised: 06/17/2023] [Accepted: 07/25/2023] [Indexed: 08/22/2023]
Abstract
Understanding how human infrastructure and other landscape attributes affect genetic differentiation in animals is an important step for identifying and maintaining dispersal corridors for these species. We built upon recent advances in the field of landscape genetics by using an individual-based and multiscale approach to predict landscape-level genetic connectivity for grizzly bears (Ursus arctos) across ~100,000 km2 in Canada's southern Rocky Mountains. We used a genetic dataset with 1156 unique individuals genotyped at nine microsatellite loci to identify landscape characteristics that influence grizzly bear gene flow at multiple spatial scales and map predicted genetic connectivity through a matrix of rugged terrain, large protected areas, highways and a growing human footprint. Our corridor-based modelling approach used a machine learning algorithm that objectively parameterized landscape resistance, incorporated spatial cross validation and variable selection and explicitly accounted for isolation by distance. This approach avoided overfitting, discarded variables that did not improve model performance across withheld test datasets and spatial predictive capacity compared to random cross-validation. We found that across all spatial scales, geographic distance explained more variation in genetic differentiation in grizzly bears than landscape variables. Human footprint inhibited connectivity across all spatial scales, while open canopies inhibited connectivity at the broadest spatial scale. Our results highlight the negative effect of human footprint on genetic connectivity, provide strong evidence for using spatial cross-validation in landscape genetics analyses and show that multiscale analyses provide additional information on how landscape variables affect genetic differentiation.
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Affiliation(s)
- Eric C Palm
- Computational Ecology Lab, School of Public and Community Health Sciences, University of Montana, Missoula, Montana, USA
- Rocky Mountain Research Station, Aldo Leopold Wilderness Research Institute, US Forest Service, Missoula, Montana, USA
| | - Erin L Landguth
- Computational Ecology Lab, School of Public and Community Health Sciences, University of Montana, Missoula, Montana, USA
- Center for Population Health Research, School of Public and Community Health Sciences, University of Montana, Missoula, Montana, USA
| | | | - Casey C Day
- Computational Ecology Lab, School of Public and Community Health Sciences, University of Montana, Missoula, Montana, USA
| | - Clayton T Lamb
- Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada
| | - Paul F Frame
- Fish and Wildlife Stewardship Branch, Government of Alberta, Whitecourt, Alberta, Canada
| | | | - Garth Mowat
- Wildlife & Habitat Branch, British Columbia Ministry of Forests, Lands, Natural Resource Operations & Rural Development, Nelson, British Columbia, Canada
- Department of Earth, Environmental and Geographic Sciences, UBC Okanagan, Kelowna, British Columbia, Canada
| | | | | | | | - Jesse Whittington
- Parks Canada, Banff National Park Resource Conservation, Banff, Alberta, Canada
| | - Katherine A Zeller
- Rocky Mountain Research Station, Aldo Leopold Wilderness Research Institute, US Forest Service, Missoula, Montana, USA
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4
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Brown MB, Fennessy JT, Crego RD, Fleming CH, Alves J, Brandlová K, Fennessy S, Ferguson S, Hauptfleisch M, Hejcmanova P, Hoffman R, Leimgruber P, Masiaine S, McQualter K, Mueller T, Muller B, Muneza A, O'Connor D, Olivier AJ, Rabeil T, Seager S, Stacy-Dawes J, van Schalkwyk L, Stabach J. Ranging behaviours across ecological and anthropogenic disturbance gradients: a pan-African perspective of giraffe ( Giraffa spp .) space use. Proc Biol Sci 2023; 290:20230912. [PMID: 37357852 PMCID: PMC10291724 DOI: 10.1098/rspb.2023.0912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 05/26/2023] [Indexed: 06/27/2023] Open
Abstract
Animal movement behaviours are shaped by diverse factors, including resource availability and human impacts on the landscape. We generated home range estimates and daily movement rate estimates for 149 giraffe (Giraffa spp.) from all four species across Africa to evaluate the effects of environmental productivity and anthropogenic disturbance on space use. Using the continuous time movement modelling framework and a novel application of mixed effects meta-regression, we summarized overall giraffe space use and tested for the effects of resource availability and human impact on 95% autocorrelated kernel density estimate (AKDE) size and daily movement. The mean 95% AKDE was 359.9 km2 and the mean daily movement was 14.2 km, both with marginally significant differences across species. We found significant negative effects of resource availability, and significant positive effects of resource heterogeneity and protected area overlap on 95% AKDE size. There were significant negative effects of overall anthropogenic disturbance and positive effects of the heterogeneity of anthropogenic disturbance on daily movements and 95% AKDE size. Our results provide unique insights into the interactive effects of resource availability and anthropogenic development on the movements of a large-bodied browser and highlight the potential impacts of rapidly changing landscapes on animal space-use patterns.
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Affiliation(s)
- Michael Butler Brown
- Giraffe Conservation Foundation, PO Box 86099, Eros, Windhoek, Namibia
- Smithsonian National Zoo and Conservation Biology Institute, Conservation Ecology Center, 1500 Remount Rd, Front Royal, VA 22630, USA
| | | | - Ramiro D. Crego
- Smithsonian National Zoo and Conservation Biology Institute, Conservation Ecology Center, 1500 Remount Rd, Front Royal, VA 22630, USA
| | - Christen H. Fleming
- Smithsonian National Zoo and Conservation Biology Institute, Conservation Ecology Center, 1500 Remount Rd, Front Royal, VA 22630, USA
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Joel Alves
- Wildscapes Veterinary & Conservation Services, Hoedspruit, South Africa
| | - Karolina Brandlová
- Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, Kamycka 129, 16500 Prague, Czechia
| | | | - Sara Ferguson
- Giraffe Conservation Foundation, PO Box 86099, Eros, Windhoek, Namibia
| | - Morgan Hauptfleisch
- Biodiversity Research Centre, Namibia University of Science and Technology, 8 Johann Albrecht Street, Windhoek, Namibia
| | - Pavla Hejcmanova
- Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, Kamycka 129, 16500 Prague, Czechia
| | - Rigardt Hoffman
- Giraffe Conservation Foundation, PO Box 86099, Eros, Windhoek, Namibia
| | - Peter Leimgruber
- Smithsonian National Zoo and Conservation Biology Institute, Conservation Ecology Center, 1500 Remount Rd, Front Royal, VA 22630, USA
| | - Symon Masiaine
- Conservation Science & Wildlife Health, San Diego Zoo Wildlife Alliance, San Diego, CA, USA
| | - Kylie McQualter
- Centre for Ecosystem Studies, School of Biological Earth and Environmental Sciences, University of New South Wales, Kensington, NSW, 2052, Australia
| | - Thomas Mueller
- Senckenberg Biodiversity and Climate Research Centre and Department of Biological Science, Goethe University Frankfurt, Frankfurt am Main, Germany
| | - Ben Muller
- Wildscapes Veterinary & Conservation Services, Hoedspruit, South Africa
| | - Arthur Muneza
- Giraffe Conservation Foundation, PO Box 86099, Eros, Windhoek, Namibia
| | - David O'Connor
- Smithsonian National Zoo and Conservation Biology Institute, Conservation Ecology Center, 1500 Remount Rd, Front Royal, VA 22630, USA
- Senckenberg Biodiversity and Climate Research Centre and Department of Biological Science, Goethe University Frankfurt, Frankfurt am Main, Germany
| | - Adriaan Jacobus Olivier
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | | | | | - Jenna Stacy-Dawes
- Conservation Science & Wildlife Health, San Diego Zoo Wildlife Alliance, San Diego, CA, USA
| | - Louis van Schalkwyk
- Office of the State Veterinarian, Department of Agriculture, Land Reform and Rural Development, Kruger National Park, Skukuza, South Africa
- Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, Germany
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Pretoria, South Africa
| | - Jared Stabach
- Smithsonian National Zoo and Conservation Biology Institute, Conservation Ecology Center, 1500 Remount Rd, Front Royal, VA 22630, USA
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Puri M, Srivathsa A, Karanth KK, Patel I, Kumar NS. Safe space in the woods: Mechanistic spatial models for predicting risks of human–bear conflicts in India. Biotropica 2023. [DOI: 10.1111/btp.13204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Affiliation(s)
- Mahi Puri
- Department of Wildlife Ecology and Conservation University of Florida Gainesville Florida USA
- Centre for Wildlife Studies Bengaluru India
| | - Arjun Srivathsa
- Department of Wildlife Ecology and Conservation University of Florida Gainesville Florida USA
- Wildlife Conservation Society–India Bengaluru India
- School of Natural Resources and Environment University of Florida Gainesville Florida USA
- National Centre for Biological Sciences, TIFR Bengaluru India
| | - Krithi K. Karanth
- Centre for Wildlife Studies Bengaluru India
- Environmental Science and Policy, Nicholas School of the Environment Duke University Durham North Carolina USA
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The genetic structure and connectivity in two sympatric rodent species with different life histories are similarly affected by land use disturbances. CONSERV GENET 2022. [DOI: 10.1007/s10592-022-01485-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
AbstractThe negative impact of habitat fragmentation due to human activities may be different in different species that co-exist in the same area, with consequences on the development of environmental protection plans. Here we aim at understanding the effects produced by different natural and anthropic landscape features on gene flow patterns in two sympatric species with different specializations, one generalist and one specialist, sampled in the same locations. We collected and genotyped 194 wood mice (generalist species) and 199 bank voles (specialist species) from 15 woodlands in a fragmented landscape characterized by different potential barriers to dispersal. Genetic variation and structure were analyzed in the two species, respectively. Effective migration surfaces, isolation-by-resistance (IBR) analysis, and regression with randomization were used to investigate isolation-by-distance (IBD) and the relative importance of land cover elements on gene flow. We observed similar patterns of heterozygosity and IBD for both species, but the bank vole showed higher genetic differences among geographic areas. The IBR analysis suggests that (i) connectivity is reduced in both species by urban areas but more strongly in the specialist bank vole; (ii) cultivated areas act as dispersal corridors in both species; (iii) woodlands appear to be an important factor in increasing connectivity in the bank vole, and less so in the wood mouse. The difference in dispersal abilities between a generalist and specialist species was reflected in the difference in genetic structure, despite extensive habitat changes due to human activities. The negative effects of fragmentation due to the process of urbanization were, at least partially, mitigated by another human product, i.e., cultivated terrains subdivided by hedgerows, and this was true for both species.
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Liang G, Liu J, Niu H, Ding S. Influence of land use changes on landscape connectivity for North China leopard ( Panthera pardus japonensis). Ecol Evol 2022; 12:e9429. [PMID: 36311388 PMCID: PMC9596324 DOI: 10.1002/ece3.9429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 09/09/2022] [Accepted: 09/26/2022] [Indexed: 11/30/2022] Open
Abstract
North China leopard (Panthera pardus japonensis) is the most widespread subspecies of leopard and one of the rare and endangered species in China. It is currently confined to several isolated natural reserves, and little is known about its habitat network connectivity with land use changes. This study was conducted to assess the impacts of land use changes on landscape connectivity for North China leopard in the Great Taihang Region. Circuit theory‐based connectivity models and least‐cost path analyses were used to delineate pathways suitable for species movement, and evaluate the impacts of land use changes on landscape connectivity. The results revealed that there were 37 least‐cost paths in 1990 and 38 in 2020. The area of forest land increased from 57,142.74 km2 to 74,836.64 km2, with the percentage increasing from 26.61% to 34.85%. In general, the increase in forest land area promoted the landscape connectivity for North China leopard at broad spatial scales. The improvement of landscape connectivity was not always consistent with the land use changes, and there was a slightly decreasing trend on connectivity in some key movement barrier areas with high intensity of human activities. Improving landscape connectivity at broad spatial scales is as important as protecting the habitats (natural reserves) where the species lives. Our study can serve as an example of exploring the relationships between land use changes and landscape connectivity for species conservation at broad spatial scales with limited movement pattern data. This information is proved to be critical for enhancing landscape connectivity for the conservation concern of North China leopard and planning of natural reserves network.
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Affiliation(s)
- Guofu Liang
- Key Laboratory of Geospatial Technology for Middle and Lower Yellow River RegionsHenan University, Ministry of EducationKaifengChina,National Demonstration Center for Experimental Environment and Planning EducationHenan UniversityKaifengChina
| | - Jingzhen Liu
- Key Laboratory of Geospatial Technology for Middle and Lower Yellow River RegionsHenan University, Ministry of EducationKaifengChina
| | - Hanbo Niu
- Key Laboratory of Geospatial Technology for Middle and Lower Yellow River RegionsHenan University, Ministry of EducationKaifengChina
| | - Shengyan Ding
- Key Laboratory of Geospatial Technology for Middle and Lower Yellow River RegionsHenan University, Ministry of EducationKaifengChina
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8
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Proctor MF, Garshelis DL, Thatte P, Steinmetz R, Crudge B, McLellan BN, McShea WJ, Ngoprasert D, Nawaz MA, Te Wong S, Sharma S, Fuller AK, Dharaiya N, Pigeon KE, Fredriksson G, Wang D, Li S, Hwang MH. Review of field methods for monitoring Asian bears. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02080] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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Biswas G, Sengupta A. Assessment of agricultural prospects in relation to land use change and population pressure on a spatiotemporal framework. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:43267-43286. [PMID: 35091927 DOI: 10.1007/s11356-021-17956-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Accepted: 12/01/2021] [Indexed: 06/14/2023]
Abstract
The urbanisation process moves quickly in emerging nations like India and Bangladesh, transforming natural landscapes into unsustainable landscapes. Consequently, growing development has had a significant impact on agricultural land as a natural environment. Moreover, there is a scarcity of research on fragmentation probability modelling in the extant literature. Thus, by combining random forest (RF) and bagging with the datasets which are multi-temporal in a GIS framework, the probability of fragmentation of LULC at Jangipur subdivision in India and Bangladesh can be modelled. Parallelepiped, Mohalnobis distance, support vector machines (SVM), spectral angle mapper (SAM), and artificial neural networks (ANN) classifiers were used for LULC classification, where SVM (Kappa coefficient: 0.87) surpassed other classifiers. The LULC maps for 1990, 2000, 2010, and 2020 were created using the best classifier (SVM). During this time, the built-up area grew from 23.769 to 158.125 km2. Then, using an ANN-based cellular automata model, the future LULC map for 2030 was predicted (CA-ANN). In 2030, the built-up area would be 201.58 km2. Then the matrices of class and landscape were taken out of the LULC maps utilising FRAGSTAT software and included the patch number (NP), largest patch index (LPI), edge density (ED), contagion index (percentage) (CONTAG), perimeter and area (P/A), aggregation index (AI), landscape percentage (PLAND), the area of class (CA), patch density (PD), edge in total (TE), total core area (TCA), and largest shape index (LSI). The validation results revealed that bagging (0.915 = AUC) and RF (0.874 = AUC) are capable of assessing fragmentation probability, with the bagging model having the greatest precision level of the two. Almost 20% of the total LULC was in a high and very high zone of fragmentation vulnerability, necessitating the use of direct measures to safeguard it. As a result, adequate LULC management is required.
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Affiliation(s)
- Gouranga Biswas
- Department of Geography, Seacom Skills University, Birbhum, West Bengal, 731236, Italy.
| | - Anuradha Sengupta
- Department of Geography, Seacom Skills University, Birbhum, West Bengal, 731236, Italy
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Tyagi A, Khan A, Thatte P, Ramakrishnan U. Genome‐wide
SNP
markers from fecal samples reveal anthropogenic impacts on connectivity: case of a small carnivore in the central Indian landscape. Anim Conserv 2022. [DOI: 10.1111/acv.12770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- A. Tyagi
- National Centre for Biological Sciences Tata Institute of Fundamental Research Bangalore India
- SASTRA Deemed to be University Thanjavur India
| | - A. Khan
- National Centre for Biological Sciences Tata Institute of Fundamental Research Bangalore India
| | - P. Thatte
- National Centre for Biological Sciences Tata Institute of Fundamental Research Bangalore India
- World Wide Fund for Nature‐India New Delhi India
| | - U. Ramakrishnan
- National Centre for Biological Sciences Tata Institute of Fundamental Research Bangalore India
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11
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Medici EP, Mezzini S, Fleming CH, Calabrese JM, Noonan MJ. Movement ecology of vulnerable lowland tapirs between areas of varying human disturbance. MOVEMENT ECOLOGY 2022; 10:14. [PMID: 35287742 PMCID: PMC8919628 DOI: 10.1186/s40462-022-00313-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 03/02/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Animal movement is a key ecological process that is tightly coupled to local environmental conditions. While agriculture, urbanisation, and transportation infrastructure are critical to human socio-economic improvement, these have spurred substantial changes in animal movement across the globe with potential impacts on fitness and survival. Notably, however, human disturbance can have differential effects across species, and responses to human activities are thus largely taxa and context specific. As human disturbance is only expected to worsen over the next decade it is critical to better understand how species respond to human disturbance in order to develop effective, case-specific conservation strategies. METHODS Here, we use an extensive telemetry dataset collected over 22 years to fill a critical knowledge gap in the movement ecology of lowland tapirs (Tapirus terrestris) across areas of varying human disturbance within three biomes in southern Brazil: the Pantanal, Cerrado, and Atlantic Forest. RESULTS From these data we found that the mean home range size across all monitored tapirs was 8.31 km2 (95% CI 6.53-10.42), with no evidence that home range sizes differed between sexes nor age groups. Interestingly, although the Atlantic Forest, Cerrado, and Pantanal vary substantially in habitat composition, levels of human disturbance, and tapir population densities, we found that lowland tapir movement behaviour and space use were consistent across all three biomes. Human disturbance also had no detectable effect on lowland tapir movement. Lowland tapirs living in the most altered habitats we monitored exhibited movement behaviour that was comparable to that of tapirs living in a near pristine environment. CONCLUSIONS Contrary to our expectations, although we observed individual variability in lowland tapir space use and movement, human impacts on the landscape also had no measurable effect on their movement. Lowland tapir movement behaviour thus appears to exhibit very little phenotypic plasticity in response to human disturbance. Crucially, the lack of any detectable response to anthropogenic disturbance suggests that human modified habitats risk being ecological traps for tapirs and this information should be factored into conservation actions and species management aimed towards protecting lowland tapir populations.
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Affiliation(s)
- E P Medici
- Lowland Tapir Conservation Initiative (LTCI), Instituto de Pesquisas Ecológicas (IPÊ), Rodovia Dom Pedro I, km 47, Nazaré Paulista, São Paulo, 12960-000, Brazil.
- IUCN SSC Tapir Specialist Group (TSG), Campo Grande, Brazil.
- Escola Superior de Conservação Ambiental E Sustentabilidade (ESCAS/IPÊ), Rodovia Dom Pedro I, km 47, Nazaré Paulista, São Paulo, 12960-000, Brazil.
| | - S Mezzini
- The Irving K. Barber Faculty of Science, The University of British Columbia, Okanagan Campus, Kelowna, Canada
| | - C H Fleming
- University of Maryland College Park, College Park, MD, USA
- Smithsonian Conservation Biology Institute, Front Royal, VA, USA
| | - J M Calabrese
- Center for Advanced Systems Understanding (CASUS), Görlitz, Germany
- Helmholtz-Zentrum Dresden Rossendorf (HZDR), Dresden, Germany
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany
| | - M J Noonan
- The Irving K. Barber Faculty of Science, The University of British Columbia, Okanagan Campus, Kelowna, Canada
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12
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Schoen JM, Neelakantan A, Cushman SA, Dutta T, Habib B, Jhala YV, Mondal I, Ramakrishnan U, Reddy PA, Saini S, Sharma S, Thatte P, Yumnam B, DeFries R. Synthesizing habitat connectivity analyses of a globally important human-dominated tiger-conservation landscape. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2022; 36:e13909. [PMID: 35288989 PMCID: PMC9545158 DOI: 10.1111/cobi.13909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Revised: 12/10/2021] [Accepted: 01/17/2022] [Indexed: 06/14/2023]
Abstract
As ecological data and associated analyses become more widely available, synthesizing results for effective communication with stakeholders is essential. In the case of wildlife corridors, managers in human-dominated landscapes need to identify both the locations of corridors and multiple stakeholders for effective oversight. We synthesized 5 independent studies of tiger (Panthera tigris) connectivity in central India, a global priority landscape for tiger conservation, to quantify agreement on landscape permeability for tiger movement and potential movement pathways. We used the latter analysis to identify connectivity areas on which studies agreed and stakeholders associated with these areas to determine relevant participants in corridor management. Three or more of the 5 studies' resistance layers agreed in 63% of the study area. Areas in which all studies agree on resistance were of primarily low (66%, e.g., forest) and high (24%, e.g., urban) resistance. Agreement was lower in intermediate resistance areas (e.g., agriculture). Despite these differences, the studies largely agreed on areas with high levels of potential movement: >40% of high average (top 20%) current-flow pixels were also in the top 20% of current-flow agreement pixels (measured by low variation), indicating consensus connectivity areas (CCAs) as conservation priorities. Roughly 70% of the CCAs fell within village administrative boundaries, and 100% overlapped forest department management boundaries, suggesting that people live and use forests within these priority areas. Over 16% of total CCAs' area was within 1 km of linear infrastructure (437 road, 170 railway, 179 transmission line, and 339 canal crossings; 105 mines within 1 km of CCAs). In 2019, 78% of forest land diversions for infrastructure and mining in Madhya Pradesh (which comprises most of the study region) took place in districts with CCAs. Acute competition for land in this landscape with globally important wildlife corridors calls for an effective comanagement strategy involving local communities, forest departments, Appendix 1 and infrastructure planners. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Jay M. Schoen
- Department of EcologyEvolution and Environmental BiologyColumbia UniversityNew YorkNew YorkUSA
| | | | | | - Trishna Dutta
- Wildlife Sciences, Faculty of Forest Sciences and Forest EcologyUniversity of GoettingenGöttingenGermany
| | | | | | | | - Uma Ramakrishnan
- The Biodiversity Collaborative, National Center for Biological SciencesTata Institute of Fundamental ResearchBangaloreIndia
| | | | | | - Sandeep Sharma
- German Centre for Integrative Biodiversity ResearchHalle‐Jena‐LeipzigLeipzigGermany
- Institute of BiologyMartin Luther University Halle‐WittenbergHalleGermany
| | | | | | - Ruth DeFries
- Department of EcologyEvolution and Environmental BiologyColumbia UniversityNew YorkNew YorkUSA
- Network for Conserving Central IndiaGurgaonIndia
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14
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Paudel RP, Kadariya R, Lamichhane BR, Subedi N, Sashika M, Shimozuru M, Tsubota T. Habitat occupancy of sloth bear Melursus ursinus in Chitwan National Park, Nepal. Ecol Evol 2022; 12:e8699. [PMID: 35342572 PMCID: PMC8928908 DOI: 10.1002/ece3.8699] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 02/14/2022] [Accepted: 02/16/2022] [Indexed: 11/08/2022] Open
Abstract
Mammals have experienced a massive decline in their populations and geographic ranges worldwide. The sloth bear, Melursus ursinus (Shaw, 1791), is one of many species facing conservation threats. Despite being endangered in Nepal, decades of inattention to the situation have hindered their conservation and management. We assessed the distribution and patterns of habitat use by sloth bears in Chitwan National Park (CNP), Nepal. We conducted sign surveys from March to June, 2020, in 4 × 4 km grids (n = 45). We collected detection/non-detection data along a 4-km trail that was divided into 20 continuous segments of 200 m each. We obtained environmental, ecological, and anthropogenic covariates to understand determinants of sloth bear habitat occupancy. The data were analyzed using the single-species single-season occupancy method, with a spatially correlated detection. Using repeated observations, these models accounted for the imperfect detectability of the species to provide robust estimates of habitat occupancy. The model-averaged occupancy estimate for the sloth bear was 69% and the detection probability was 0.25. The probability of habitat occupancy by sloth bears increased with the presence of termites and fruits and in rugged, dry, open, undisturbed habitats. Our results indicate that the sloth bear is elusive, functionally unique, and widespread in CNP. Future conservation interventions and action plans aimed at sloth bear management must adequately consider their habitat requirements.
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Affiliation(s)
- Rajan Prasad Paudel
- Laboratory of Wildlife Biology and MedicineDepartment of Environmental Veterinary ScienceGraduate School of Veterinary MedicineHokkaido UniversitySapporoJapan
| | | | | | | | - Mariko Sashika
- Laboratory of Wildlife Biology and MedicineDepartment of Environmental Veterinary ScienceGraduate School of Veterinary MedicineHokkaido UniversitySapporoJapan
| | - Michito Shimozuru
- Laboratory of Wildlife Biology and MedicineDepartment of Environmental Veterinary ScienceGraduate School of Veterinary MedicineHokkaido UniversitySapporoJapan
| | - Toshio Tsubota
- Laboratory of Wildlife Biology and MedicineDepartment of Environmental Veterinary ScienceGraduate School of Veterinary MedicineHokkaido UniversitySapporoJapan
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15
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Abstract
Habitat modeling is one of the most common practices in ecology today, aimed at understanding complex associations between species and an array of environmental, bioclimatic, and anthropogenic factors. This review of studies of seven species of terrestrial bears (Ursidae) occupying four continents examines how habitat models have been employed, and the functionality of their predictions for management and conservation. Bear occurrence data have been obtained at the population level, as presence points (e.g., sign surveys or camera trapping), or as locations of individual radio-collared animals. Radio-collars provide greater insights into how bears interact with their environment and variability within populations; they are more commonly used in North America and Europe than in South America and Asia. Salient problematic issues apparent from this review included: biases in presence data; predictor variables being poor surrogates of actual behavioral drivers; predictor variables applied at a biologically inappropriate scale; and over-use of data repositories that tend to detach investigators from the species. In several cases, multiple models in the same area yielded different predictions; new presence data occurred outside the range of predicted suitable habitat; and future range projections, based on where bears presently exist, underestimated their adaptability. Findings here are likely relevant to other taxa.
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16
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Kannan P, Salaria S, Khan S, Mark T, Baberwal N, Bhatnagar A, Shethia Y, Thatte P, Chanchani P. Assessing Carnivore Occurrence and Community Attitudes Towards Wildlife in a Multi-Use Arid Landscape Corridor. FRONTIERS IN CONSERVATION SCIENCE 2022. [DOI: 10.3389/fcosc.2021.787431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Small population sizes, low densities, and large area requirements make large carnivores particularly sensitive to habitat degradation and land-use change. In fragmented landscapes, many protected areas cannot accommodate viable wildlife populations in themselves, which brings the surrounding human-dominated matrix that may extend wildlife habitats or serve as corridors into focus. Such areas are typically excluded from the conservation portfolio and are subject to rapid land -use change in many areas. This study investigates the occurrence of tigers, sloth bears, leopards and striped hyenas and assesses community use of natural resources and attitudes towards wildlife in a 3,384 km2 portion of semi-arid multiple-use landscape in Western India that also serves as an important wildlife corridor. This area abuts Ranthambore Tiger Reserve, a preeminent protected area in Western India. Sign surveys spanning 1,039.22 km of trails were conducted in 94, 36 km2 grids spanning agricultural land, forests and other land use types to collate information on wildlife occurrence and associated environmental and human factors. Analysis using occupancy models revealed that tiger and sloth bear occurrence probabilities (0.093 ± 0.05), and (0.13 ± 0.02) were considerably lower than those for leopards (0.72 ± 0.22) and striped hyenas (0.91 ± 0.08). Lack of sufficient cover and limited food availability renders these multiple-use habitats poorly suited for tigers and sloth bears, while leopards and hyenas are able to adapt better to multi-use areas. Concurrently, 66 villages were surveyed across the study landscape, where data on broad socio-economic attributes of communities and their attitudes towards wildlife were assessed through questionnaire surveys. More respondents expressed negative attitudes than positive attitudes which vary as a function of education levels, occupation and land holding sizes. Ongoing landscape transformation through mining, agricultural expansion, infrastructure development, and negative attitudes towards wildlife conservation among people living in the agricultural matrix threatens the long-term functionality of these corridors. Therefore, immediate measures are needed to develop and implement corridor conservation strategies and plans, with a focus on land use planning and human-wildlife conflict mitigation. In the absence of decisive and timely action, wildlife populations may increasingly get relegated to fragmented patches, jeopardising their persistence.
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Katna A, Kulkarni A, Thaker M, Vanak AT. Habitat specificity drives differences in space‐use patterns of multiple mesocarnivores in an agroecosystem. J Zool (1987) 2021. [DOI: 10.1111/jzo.12933] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- A. Katna
- Ashoka Trust for Research in Ecology and the Environment (ATREE) Bangalore Karnataka India
- Manipal Academy of Higher Education Manipal Karnataka India
| | - A. Kulkarni
- Ashoka Trust for Research in Ecology and the Environment (ATREE) Bangalore Karnataka India
| | - M. Thaker
- Centre for Ecological Sciences Indian Institute of Science Bangalore Karnataka India
| | - A. T. Vanak
- Ashoka Trust for Research in Ecology and the Environment (ATREE) Bangalore Karnataka India
- DBT/Wellcome Trust India Alliance Hyderabad Telangana India
- School of Life Sciences University of KwaZulu‐Natal Westville Durban South Africa
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18
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Modi S, Mondol S, Nigam P, Habib B. Genetic analyses reveal demographic decline and population differentiation in an endangered social carnivore, Asiatic wild dog. Sci Rep 2021; 11:16371. [PMID: 34385570 PMCID: PMC8361113 DOI: 10.1038/s41598-021-95918-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Accepted: 07/31/2021] [Indexed: 02/07/2023] Open
Abstract
Deforestation and agricultural intensification have resulted in an alarming change in the global land cover over the past 300 years, posing a threat to species conservation. Dhole is a monophyletic, social canid and, being an endangered and highly forest-dependent species, is more prone to the loss of favorable habitat in the Anthropocene. We determined the genetic differentiation and demographic history of dhole across the tiger reserves of Maharashtra using the microsatellite data of 305 individuals. Simulation-based analyses revealed a 77-85% decline in the major dhole sub-populations. Protected areas have provided refuge to the historically declining dhole population resulting in clustering with strong genetic structure in the remnant dhole population. The historical population decline coincides with the extreme events in the landscape over the past 300 years. The study highlights the pattern of genetic differentiation and diversity of a highly forest-dependent species which can be associated with the loss of forest cover outside tiger reserves. It also warrants attention to develop conservation plans for the remnant surviving population of dholes in India.
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Affiliation(s)
- Shrushti Modi
- Wildlife Institute of India, Chandrabani, Dehradun, 248001, India
| | - Samrat Mondol
- Wildlife Institute of India, Chandrabani, Dehradun, 248001, India
| | - Parag Nigam
- Wildlife Institute of India, Chandrabani, Dehradun, 248001, India
| | - Bilal Habib
- Wildlife Institute of India, Chandrabani, Dehradun, 248001, India.
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19
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Considerations for Initiating a Wildlife Genomics Research Project in South and South-East Asia. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-021-00243-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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20
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Trends in Wildlife Connectivity Science from the Biodiverse and Human-Dominated South Asia. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-021-00240-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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21
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Chauhan K, Srivathsa A, Athreya V. Assessing spatio-temporal patterns of human-leopard interactions based on media reports in northwestern India. JOURNAL OF THREATENED TAXA 2021. [DOI: 10.11609/jott.7244.13.6.18453-18478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
Large carnivores in human-use areas make for sensational print media content. We used media reports to examine human-leopard interactions in Rajasthan, India. We extracted news reports on leopard-related incidents from January 2016 to December 2018. Incidents (n= 338) were categorized, mapped, and analysed to understand their nature and extent. We found leopard-related news from 26 of 33 districts; a majority of these were in the eastern region of the State. Most of the reported interactions appeared to be non-negative, despite losses to both leopards and people. Our results provide a synthesis of spatio-temporal patterns of leopard-related incidents, which could help wildlife managers in better addressing negative interactions. The study also demonstrates how news reports could be useful for examining human-wildlife interactions across large spatial scales.
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22
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Krishnan A. Lessons Across Scales: Molecular Ecology and Wildlife Conservation. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-021-00232-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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23
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Snow Leopard (Panthera uncia) Genetics: The Knowledge Gaps, Needs, and Implications for Conservation. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-021-00236-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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24
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Tassone EE, Miles LS, Dyer RJ, Rosenberg MS, Cowling RM, Verrelli BC. Evolutionary stability, landscape heterogeneity, and human land-usage shape population genetic connectivity in the Cape Floristic Region biodiversity hotspot. Evol Appl 2021; 14:1109-1123. [PMID: 33897824 PMCID: PMC8061270 DOI: 10.1111/eva.13185] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 12/03/2020] [Accepted: 12/08/2020] [Indexed: 01/06/2023] Open
Abstract
As human-induced change eliminates natural habitats, it impacts genetic diversity and population connectivity for local biodiversity. The South African Cape Floristic Region (CFR) is the most diverse extratropical area for plant biodiversity, and much of its habitat is protected as a UNESCO World Heritage site. There has long been great interest in explaining the underlying factors driving this unique diversity, especially as much of the CFR is endangered by urbanization and other anthropogenic activity. Here, we use a population and landscape genetic analysis of SNP data from the CFR endemic plant Leucadendron salignum or "common sunshine conebush" as a model to address the evolutionary and environmental factors shaping the vast CFR diversity. We found that high population structure, along with relatively deeper and older genealogies, is characteristic of the southwestern CFR, whereas low population structure and more recent lineage coalescence depict the eastern CFR. Population network analyses show genetic connectivity is facilitated in areas of lower elevation and higher seasonal precipitation. These population genetic signatures corroborate CFR species-level patterns consistent with high Pleistocene biome stability and landscape heterogeneity in the southwest, but with coincident instability in the east. Finally, we also find evidence of human land-usage as a significant gene flow barrier, especially in severely threatened lowlands where genetic connectivity has been historically the highest. These results help identify areas where conservation plans can prioritize protecting high genetic diversity threatened by contemporary human activities within this unique cultural UNESCO site.
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Affiliation(s)
| | - Lindsay S. Miles
- Center for the Study of Biological ComplexityVirginia Commonwealth UniversityRichmondVirginiaUSA
| | - Rodney J. Dyer
- Center for Environmental StudiesVirginia Commonwealth UniversityRichmondVirginiaUSA
| | - Michael S. Rosenberg
- School of Life SciencesArizona State UniversityTempeArizonaUSA
- Center for the Study of Biological ComplexityVirginia Commonwealth UniversityRichmondVirginiaUSA
| | - Richard M. Cowling
- African Centre for Coastal PalaeoscienceBotany DepartmentNelson Mandela UniversityPort ElizabethSouth Africa
| | - Brian C. Verrelli
- School of Life SciencesArizona State UniversityTempeArizonaUSA
- Center for the Study of Biological ComplexityVirginia Commonwealth UniversityRichmondVirginiaUSA
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25
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Garg KM, Chattopadhyay B. Gene Flow in Volant Vertebrates: Species Biology, Ecology and Climate Change. J Indian Inst Sci 2021; 101:165-176. [PMID: 34155425 PMCID: PMC8207815 DOI: 10.1007/s41745-021-00239-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Accepted: 05/05/2021] [Indexed: 02/06/2023]
Abstract
Gene flow, the exchange of genetic material between populations is an important biological process, which shapes and maintains biodiversity. The successful movement of individuals between populations depends on multiple factors determined by species biology and the environment. One of the most important factors regulating gene flow is the ability to move, and flight allows individuals to easily move across geographical barriers. Volant vertebrates are found on some of the remotest islands and contribute significantly to the biodiversity and ecosystem. The availability of next-generation sequencing data for non-model animals has substantially improved our understanding of gene flow and its consequences, allowing us to look at fine-scale patterns. However, most of our understanding regarding gene flow comes from the temperate regions and the Neotropics. The lack of studies from species-rich Asia is striking. In this review, we outline the importance of gene flow and the factors affecting gene flow, especially for volant vertebrates. We especially discuss research studies from tropical biomes of South and Southeast Asia, highlight the lacuna in literature and provide an outline for future studies in this species-rich region.
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Affiliation(s)
- Kritika M. Garg
- grid.418831.70000 0004 0500 991XInstitute of Bioinformatics and Applied Biotechnology, Bengaluru, Karnataka India ,grid.449178.70000 0004 5894 7096Department of Biology, Ashoka University, Sonipat, Haryana India
| | - Balaji Chattopadhyay
- grid.449178.70000 0004 5894 7096Trivedi School of Biosciences, Ashoka University, Sonipat, Haryana India
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26
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Gubbi S, Sharma K, Kumara V. Every hill has its leopard: patterns of space use by leopards ( Panthera pardus) in a mixed use landscape in India. PeerJ 2020; 8:e10072. [PMID: 33083134 PMCID: PMC7548080 DOI: 10.7717/peerj.10072] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 09/09/2020] [Indexed: 11/20/2022] Open
Abstract
Understanding abundance and distribution of species is often necessary for wildlife conservation. However, elusive species such as the leopard (Panthera pardus) that have wide geographical distribution and typically low abundance pose a constant challenge to conservationists due to logistical and methodological constraints. Although leopard abundance has been estimated at the scale of protected areas or other smaller regions, reliable information describing leopard distribution over large spatial scales remains largely unavailable. Knowledge about space use by leopards within landscapes could help improve conservation management, reduce human-wildlife conflict, and also facilitate population status monitoring. We carried out occupancy surveys across c. 24,000 km2 in southern India in a landscape that consisted a mosaic of leopards’ natural habitats and highly human-dominated areas. We investigated the effects of key ecological and anthropogenic variables in determining leopard space use patterns. We addressed imperfect detections obtained using sign surveys conducted on spatially replicated transects within sampling units by modeling detection as a function of spatial auto-correlation and covariates. Our results show that the probability of site-use by leopards across the landscape varied between 0.02 (95% CI [0.01–0.09]) and 0.99 (95% CI [0.99–1.0]) across the study area. The best model (AIC weight = 0.97) showed that the probability of leopard space use was affected by the proportion of natural habitats and the presence of large wild prey in the sampling unit. Given that India is undergoing rapid modifications due to economic changes and demand for natural resources, we emphasize the need for landscape-based approach for conserving and monitoring leopards. We argue that leopards are an indicator of functional ecosystems represented by scrub, deciduous forest and rocky outcrops that do not always get prioritized for conservation, unlike densely forested habitats. Similarly, conservation of natural large wild prey, especially outside the protected area system, should assume greater importance, which could also have a positive impact on reducing human-leopard conflict.
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Affiliation(s)
- Sanjay Gubbi
- Nature Conservation Foundation, Mysore, Karnataka, India.,Department of Wildlife and Management, Kuvempu University, Shankaraghatta, Karnataka, India.,Holématthi Nature Foundation, Bengaluru, Karnataka, India
| | - Koustubh Sharma
- Nature Conservation Foundation, Mysore, Karnataka, India.,Snow Leopard Trust, Seattle, WA, USA
| | - Vijaya Kumara
- Department of Wildlife and Management, Kuvempu University, Shankaraghatta, Karnataka, India
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