1
|
Lachover-Roth I, Peretz S, Zoabi H, Harel E, Livshits L, Filon D, Levin C, Koren A. Support Vector Machine-Based Formula for Detecting Suspected α Thalassemia Carriers: A Path toward Universal Screening. Int J Mol Sci 2024; 25:6446. [PMID: 38928152 PMCID: PMC11203927 DOI: 10.3390/ijms25126446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 06/03/2024] [Accepted: 06/05/2024] [Indexed: 06/28/2024] Open
Abstract
The blood counts of α thalassemia carriers (α-thal) are similar to those of β thalassemia carriers, except for Hemoglobin A2 (Hb A2), which is not elevated. The objective of this study was to determine whether mathematical formulas are effective for detecting suspected α-thal. The data were obtained from the database of the prevention program for detecting couples at risk for having a child with hemoglobinopathy. Red Blood Cells (RBC) indices were analyzed using mathematical formulas, and the sensitivity and negative predictive value (NPV) were calculated. Among 1334 blood counts suspected of α-thal analyzed, only the Shine and Lal and the Support Vector Machine formulas revealed high sensitivity and NPV. Sensitivity was 85.54 and 99.33%, and NPV was 98.93 and 99.93%, respectively. Molecular defects were found in 291, and 81 had normal α genes. Molecular analysis was not performed in 962 of the samples. Based on these results, mathematical formulas incorporating one of these reliable formulas for detecting suspected α or β thalassemia carriers in the program of the automatic analyzers can flag these results, increase the awareness of the primary physicians about the carrier risk, and send an alert with a recommendation for further testing.
Collapse
Affiliation(s)
- Idit Lachover-Roth
- Allergy and Clinical Immunology Unit, Meir Medical Center, Kfar Saba 4428163, Israel;
- School of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Sari Peretz
- Hematology Laboratory, Emek Medical Center, Afula 1834111, Israel; (S.P.); (H.Z.); (E.H.)
| | - Hiba Zoabi
- Hematology Laboratory, Emek Medical Center, Afula 1834111, Israel; (S.P.); (H.Z.); (E.H.)
| | - Eitam Harel
- Hematology Laboratory, Emek Medical Center, Afula 1834111, Israel; (S.P.); (H.Z.); (E.H.)
| | - Leonid Livshits
- Red Blood Cell Research Group, Vetsuisse Faculty, Institute of Veterinary Physiology, University of Zurich, 8057 Zürich, Switzerland;
- The Zurich Center for Integrative Human Physiology (ZIHP), 8057 Zürich, Switzerland
| | - Dvora Filon
- Hematology Division, Hadassah Medical Center, Jerusalem 9112001, Israel;
| | - Carina Levin
- Pediatric Hematology Unit, Research Laboratory, Emek Medical Center, Afula 1834111, Israel;
- The Ruth and Bruce Rappaport Faculty of Medicine, Technion–Israel Institute of Technology, Haifa 3525422, Israel
| | - Ariel Koren
- Pediatric Hematology Unit, Research Laboratory, Emek Medical Center, Afula 1834111, Israel;
| |
Collapse
|
2
|
Assaf N, El Zibaoui R, Monsef C, Abi Nassif T, Abboud M, Yazbek S. Severe Transfusion-Dependent Thalassemia in Compound Heterozygote Palestinian Siblings with Two α-Globin Gene Defects, Hb Taybe D HBA1: C.119_121delCCA Mutation and HBA2: C.*94A > G Mutation. Hemoglobin 2024; 48:129-132. [PMID: 38626925 DOI: 10.1080/03630269.2024.2338850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 03/20/2024] [Indexed: 04/30/2024]
Abstract
Alpha and Beta Thalassemia are autosomal recessive anemias that cause significant morbidity and mortality worldwide, especially in the Middle East and North Africa (MENA) region where carrier rates reach up to 50%. We report the case of two siblings of Palestinian origin born who presented to our tertiary healthcare center for the management of severe transfusion dependent hemolytic anemia. Before presentation to our center, the siblings were screened for a-thalassemia using the Alpha-globin StripAssay. They were found to carry the α2 polyA-1 [AATAAA > AATAAG] mutation in the heterozygous form, which was insufficient to make a diagnosis. No pathogenic variants were detected on Sanger sequencing of the HBB gene. Full sequencing of the a-gene revealed compound heterozygous variants (HBA1:c.119_121delCCA and the previously detected HBA2:c.*+94A > G Poly A [A->G]) with trans inheritance. This report highlights the impact of non-deletional mutations on α-globin chain stability. The compound heterozygosity of a rare α-globin chain pathogenic variant with a polyadenylation mutation in the probands leads to clinically severe a-thalassemia. Due to the high carrier status, the identification of rare mutations through routine screening techniques in our populations may be insufficient. Ongoing collaboration among hematologists, medical geneticists, and counselors is crucial for phenotypic-genotypic correlation and assessment of adequate genetic testing schemes.
Collapse
Affiliation(s)
- Nada Assaf
- Department of Pathology and Laboratory Medicine, American University of Beirut Medical Center, Beirut, Lebanon
- Faculty of Medicine, American University of Beirut, Beirut, Lebanon
| | - Roba El Zibaoui
- Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut Medical Center, Beirut, Lebanon
| | - Carla Monsef
- Department of Pathology and Laboratory Medicine, American University of Beirut Medical Center, Beirut, Lebanon
- Faculty of Medicine, American University of Beirut, Beirut, Lebanon
| | - Tania Abi Nassif
- Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, American University of Beirut Medical Center, Beirut, Lebanon
| | - Miguel Abboud
- Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, American University of Beirut Medical Center, Beirut, Lebanon
| | - Soha Yazbek
- Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut Medical Center, Beirut, Lebanon
| |
Collapse
|
3
|
Wajcman H, de Brevern AG, Riou J, Latouche C, Marden MC, Pissard S. Short in-Frame Insertions/Deletions in the Coding Sequence of the α-Globin Gene. Consequences of the 3D Structure and Resulting Phenotypes: Hb Choisy as an Example. Hemoglobin 2019; 42:287-293. [PMID: 30700179 DOI: 10.1080/03630269.2018.1556683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
A small group of hemoglobin (Hb) variants result from 'in-frame' deletion/insertion (del/ins). We describe a new variant of this group (Hb Choisy), found on the α1 gene, which is the exact counterpart of a previously published deletional variant, Hb J-Biskra [codons 51-58 (or codons 52-59) (-24 bp) (-TCTGCCCAGGTTAAGGGCCACGGC); HBA1: c.157_180del (or HBA2)]. In Hb J-Biskra, the sequence Ser-Ala-Gln-Val-Lys-Gly-His-Gly located from positions α52(E1) to α59(E8) is deleted, while in Hb Choisy the same sequence (Ser-Ala-Gln-Val-Lys-Gly-His-Gly) is inserted at position α52(E1). The variant carrying the insertion appears to be less damaging than the one with the deletion. A possible explanation could be that the additional sequence is located in the C to E interhelical region, and is less disturbing to the general structure of the globin chain. This insertion/deletion (ins/del) is likely favored by the repetition, at an interval of 16 nucleotides, of an eight nucleotide sequence. Comparison of variants of this group, found in the HbVar database, shows that structural modifications resulting from insertions are frequently less damaging than that caused by deletions.
Collapse
Affiliation(s)
- Henri Wajcman
- a Institut National de la Sante et de la Recherche Médicale (INSERM) U 955 eq 2 , Institut Mondor de Recherche Biomoléculaire (IMRB) , Créteil , France
| | - Alexandre G de Brevern
- b Biologie Integree du Globule Rouge Unité Mixte de Recherche (UMR)-S1134, INSERM , Université Paris Diderot, Sorbonne, Paris Cite, Université de la Réunion, Université des Antilles , Paris , France.,c Institut National de la Transfusion Sanguine (INTS) , Paris , France.,e Laboratoire d'Excellence GR-Ex , Créteil , France
| | - Jean Riou
- d Assistance Publique-Hôpitaux de Paris (APHP), Département de Génétique , Hôpital Henri Mondor , Créteil , France
| | - Celine Latouche
- d Assistance Publique-Hôpitaux de Paris (APHP), Département de Génétique , Hôpital Henri Mondor , Créteil , France
| | - Michael C Marden
- a Institut National de la Sante et de la Recherche Médicale (INSERM) U 955 eq 2 , Institut Mondor de Recherche Biomoléculaire (IMRB) , Créteil , France.,e Laboratoire d'Excellence GR-Ex , Créteil , France
| | - Serge Pissard
- a Institut National de la Sante et de la Recherche Médicale (INSERM) U 955 eq 2 , Institut Mondor de Recherche Biomoléculaire (IMRB) , Créteil , France.,d Assistance Publique-Hôpitaux de Paris (APHP), Département de Génétique , Hôpital Henri Mondor , Créteil , France.,e Laboratoire d'Excellence GR-Ex , Créteil , France
| |
Collapse
|
4
|
Resnitzky P, Shaft D, Shalev H, Kapelushnik J, Dgany O, Krasnov T, Tamary H. Morphological features of congenital dyserythropoietic anemia type I: The role of electron microscopy in diagnosis. Eur J Haematol 2017; 99:366-371. [DOI: 10.1111/ejh.12931] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/21/2017] [Indexed: 10/19/2022]
Affiliation(s)
- Peretz Resnitzky
- Efrati Research Laboratory for Blood Cells and Cytology; Kaplan Medical Center; Rehovot Israel
- Hebrew University School of Medicine; Jerusalem Israel
| | - Dina Shaft
- Efrati Research Laboratory for Blood Cells and Cytology; Kaplan Medical Center; Rehovot Israel
| | - Hanna Shalev
- Pediatric Division; Soroka Medical Center; Beer Sheva Israel
- Faculty of Medicine; Ben-Gurion University; Beer Sheva Israel
| | - Joseph Kapelushnik
- Faculty of Medicine; Ben-Gurion University; Beer Sheva Israel
- Department of Pediatric Hematology-Oncology; Soroka Medical Center; Beer Sheva Israel
| | - Orly Dgany
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Beilinson Hospital; Petach Tikva Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
| | - Tanya Krasnov
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Beilinson Hospital; Petach Tikva Israel
| | - Hannah Tamary
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Beilinson Hospital; Petach Tikva Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Hematology Unit; Schneider Children's Medical Center of Israel; Petach Tikva Israel
| |
Collapse
|
5
|
Gilad O, Shemer OS, Dgany O, Krasnov T, Nevo M, Noy-Lotan S, Rabinowicz R, Amitai N, Ben-Dor S, Yaniv I, Yacobovich J, Tamary H. Molecular diagnosis of α-thalassemia in a multiethnic population. Eur J Haematol 2017; 98:553-562. [DOI: 10.1111/ejh.12866] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2016] [Revised: 01/04/2017] [Accepted: 01/30/2017] [Indexed: 12/11/2022]
Affiliation(s)
- Oded Gilad
- Department of Hematology-Oncology; Schneider Children's Medical Center of Israel; Petach Tik Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
| | - Orna Steinberg Shemer
- Department of Hematology-Oncology; Schneider Children's Medical Center of Israel; Petach Tik Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Petach Tikva Israel
| | - Orly Dgany
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Petach Tikva Israel
| | - Tanya Krasnov
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Petach Tikva Israel
| | - Michal Nevo
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Department of Pediatrics B; Schneider Children's Medical Center of Israel; Petach Tik Israel
| | - Sharon Noy-Lotan
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Petach Tikva Israel
| | - Ron Rabinowicz
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Department of Pediatrics B; Schneider Children's Medical Center of Israel; Petach Tik Israel
| | - Nofar Amitai
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Department of Pediatrics B; Schneider Children's Medical Center of Israel; Petach Tik Israel
| | - Shifra Ben-Dor
- Bioinformatics and Biological Computing Unit; Weizmann Institute of Science; Rehovot Israel
| | - Isaac Yaniv
- Department of Hematology-Oncology; Schneider Children's Medical Center of Israel; Petach Tik Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
| | - Joanne Yacobovich
- Department of Hematology-Oncology; Schneider Children's Medical Center of Israel; Petach Tik Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
| | - Hannah Tamary
- Department of Hematology-Oncology; Schneider Children's Medical Center of Israel; Petach Tik Israel
- Sackler Faculty of Medicine; Tel Aviv University; Tel Aviv Israel
- Pediatric Hematology Laboratory; Felsenstein Medical Research Center; Petach Tikva Israel
| |
Collapse
|