Management of alien fishes in the Murray-Darling Basin

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray-Darling Basin, Australia

Biological invasions are among the biggest threats to freshwater biodiversity. This is increasingly relevant in the Murray-Darling Basin, Australia, particularly since the introduction of the common carp (Cyprinus carpio). This invasive species now occupies up to ninety per cent of fish biomass, with hugely detrimental impacts on native fauna and flora. To address the ongoing impacts of carp, cyprinid herpesvirus 3 (CyHV-3) has been proposed as a potentially effective biological control agent. Crucially, however, it is unknown whether CyHV-3 and other cyprinid herpesviruses already exist in the Murray-Darling. Further, little is known about those viruses that naturally occur in wild freshwater fauna, and the frequency with which these viruses jump species boundaries. To document the evolution and diversity of freshwater fish viromes and better understand the ecological context to the proposed introduction of CyHV-3, we performed a meta-transcriptomic viral survey of invasive and native fish across the Murray-Darling Basin, covering over 2,200 km of the river system. Across a total of thirty-six RNA libraries representing ten species, we failed to detect CyHV-3 nor any closely related viruses. Rather, meta-transcriptomic analysis identified eighteen vertebrate-associated viruses that could be assigned to the Arenaviridae, Astroviridae, Bornaviridae, Caliciviridae, Coronaviridae, Chuviridae, Flaviviridae, Hantaviridae, Hepeviridae, Paramyxoviridae, Picornaviridae, Poxviridae, Reoviridae and Rhabdoviridae families, and a further twenty-seven that were deemed to be associated with non-vertebrate hosts. Notably, we revealed a marked lack of viruses that are shared among invasive and native fish sampled here, suggesting that there is little virus transmission from common carp to native fish species, despite co-existing for over fifty years. Overall, this study provides the first data on the viruses naturally circulating in a major river system and supports the notion that fish harbour a large diversity of viruses with often deep evolutionary histories.

The Role of Water Temperature Modelling in the Development of a Release Strategy for Cyprinid Herpesvirus 3 (CyHV-3) for Common Carp Control in Southeastern Australia

The common carp (Cyprinus carpio) is an invasive species in the rivers and waterways of southeastern Australia, and it has been implicated in the serious decline of many native fish species. Over the past 50 years, various control options have been explored, and to date, these have been ineffective or cost-prohibitive. Most recently, cyprinid herpesvirus 3 (CyHV-3) has been proposed as a biocontrol agent because of its high specificity and mortality rate. However, the virus is known to be only effective in a permissive water temperature range of approximately 16–28 °C. To define when this occurs, we undertook a hydrological reconstruction of five diverse river catchments (>130,000 km2) of southeastern Australia over three decades. This confirmed, in the studied areas, that while water temperatures are permissive from spring through to autumn, the time of year that this starts and ends is highly variable, interannually, and with strong latitudinal and altitudinal gradients between and within catchments. The results show that the virus should be effective with respect to water temperature throughout the water temperature range that carp occur in most of southeastern Australia. However, detailed water temperature estimation would still be required to determine the exact week of the start of release in any given catchment. Referring to observations in wild carp populations, we point out the limitation of developing a “release strategy” based solely on water temperature modelling and the need to incorporate fish biology and ecology into this planning.

Piscivory by alien redfin perch (Perca fluviatilis) begins earlier than anticipated in two contrasting habitats of Lake Alexandrina, South Australia

Redfin perch (Perca fluviatilis) introduced to the Southern Hemisphere has contributed to the decline or localised extirpations of native fishes, principally due to predation. It has been widely recorded in the Murray–Darling Basin, south-eastern Australia, since the 1920s but the ecological consequences are largely undetermined. The purpose of this study was to examine the diet of juvenile redfin perch in Lake Alexandrina to assess its potential impacts on native biota in two distinct habitats (channel and lake). We proposed that the broad dietary composition of juvenile redfin perch matches that of its natural range (small decapods and insects). Most juvenile redfin perch with prey items in their guts, however, had consumed native fish. There was variability in the diet of redfin perch between the channel and lake where gudgeons and gobies, respectively, were targeted. Unexpectedly, otolith ageing revealed that the redfin perch were larger and shifted to piscivory at a much younger age compared with populations in its native range. Among other ecological issues, the findings are pertinent to threatened small-bodied fish populations in the Murray–Darling Basin. More broadly, they suggest that a generalist feeding behaviour can lead to the early onset of piscivory in alien fish populations.

Pathogenicity in six Australian reptile species following experimental inoculation with Bohle iridovirus

Ranaviruses are able to infect multiple species of fish, amphibian and reptile, and some strains are capable of interclass transmission. These numerous potential carriers and reservoir species compound efforts to control and contain infections in cultured and wild populations, and a comprehensive knowledge of susceptible species and life stage is necessary to inform such processes. Here we report on the challenge of 6 water-associated reptiles with Bohle iridovirus (BIV) to investigate its potential pathogenicity in common native reptiles of the aquatic and riparian fauna of northern Queensland, Australia. Adult tortoises Elseya latisternum and Emydura krefftii, snakes Boiga irregularis, Dendrelaphis punctulatus and Amphiesma mairii, and yearling crocodiles Crocodylus johnstoni were exposed via intracoelomic inoculation or co-habitation with infected con-specifics, but none were adversely affected by the challenge conditions applied here. Bohle iridovirus was found to be extremely virulent in hatchling tortoises E. latisternum and E. krefftii via intracoelomic challenge, as demonstrated by distinct lesions in multiple organs associated with specific immunohistochemistry staining and a lethal outcome (10/17) of the challenge. Virus was re-isolated from 2/5 E. latisternum, 4/12 E. krefftii and 1/3 brown tree snakes B. irregularis. Focal necrosis, haemorrhage and infiltration of granulocytes were frequently observed histologically in the pancreas, liver and sub-mucosa of the intestine of challenged tortoise hatchlings. Immunohistochemistry demonstrated the presence of ranavirus antigens in the necrotic lesions and in individual cells of the vascular endothelium, the connective tissue and in granulocytes associated with necrosis or present along serosal surfaces. The outcome of this study confirms hatchling tortoises are susceptible to BIV, thereby adding Australian reptiles to the host range of ranaviruses. Additionally, given that BIV was originally isolated from an amphibian, our study provides additional evidence that interclass transmission of ranavirus may occur in the wild.