How much energetic trade-offs limit selection? Insights from livestock and related laboratory model species

Large changes in detected selection signatures after a selection limit in mice bred for voluntary wheel-running behavior

In various organisms, sequencing of selectively bred lines at apparent selection limits has demonstrated that genetic variation can remain at many loci, implying that evolution at the genetic level may continue even if the population mean phenotype remains constant. We compared selection signatures at generations 22 and 61 of the "High Runner" mouse experiment, which includes 4 replicate lines bred for voluntary wheel-running behavior (HR) and 4 non-selected control (C) lines. Previously, we reported multiple regions of differentiation between the HR and C lines, based on whole-genome sequence data for 10 mice from each line at generation 61, which was >31 generations after selection limits had been reached in all HR lines. Here, we analyzed pooled sequencing data from ~20 mice for each of the 8 lines at generation 22, around when HR lines were reaching limits. Differentiation analyses of allele frequencies at ~4.4 million SNP loci used the regularized T-test and detected 258 differentiated regions with FDR = 0.01. Comparable analyses involving pooling generation 61 individual mouse genotypes into allele frequencies by line produced only 11 such regions, with almost no overlap among the largest and most statistically significant peaks between the two generations. These results implicate a sort of "genetic churn" that continues at loci relevant for running. Simulations indicate that loss of statistical power due to random genetic drift and sampling error are insufficient to explain the differences in selection signatures. The 13 differentiated regions at generation 22 with strict culling measures include 79 genes related to a wide variety of functions. Gene ontology identified pathways related to olfaction and vomeronasal pathways as being overrepresented, consistent with generation 61 analyses, despite those specific regions differing between generations. Genes Dspp and Rbm24 are also identified as potentially explaining known bone and skeletal muscle differences, respectively, between the linetypes.

The role of genetic variability of the host on the resistance to Neospora caninum infection in cattle

Neospora caninum is one of the most frequently diagnosed abortifacient pathogens in cattle. There is abundant genomic information about the parasite itself, but very little is known about the genetic variability of resistance in the most common intermediate host. The aim of this review was to compile all the available information about the genetic variability associated with the resistance to N. caninum both between and within cattle breeds. We systematically searched for published studies that investigated the influence of genetics of the host on the prevalence of N. caninum and risk of abortion. Beyond the potential confounding effects of feeding systems, management and animal density, some lines of evidence suggest that Holstein, the most popular breed for milk production, has a comparatively higher risk of abortion due to infections by N. caninum, whereas some beef breeds from Continental Europe seem to be more resistant. It is still not clear if different genetic mechanisms of resistance are involved in the two known routes of infection: postnatal ingestion of oocysts or transplacental transmission from the infected dam to the fetus. Genomic information associated with susceptibility to infection and risk of abortion in different cattle breeds is still scarce. The information reported here could be useful to identify new research alternatives and to define novel strategies to deal with this major problem of animal production.

Does Behavior Evolve First? Correlated Responses to Selection for Voluntary Wheel-Running Behavior in House Mice

AbstractHow traits at multiple levels of biological organization evolve in a correlated fashion in response to directional selection is poorly understood, but two popular models are the very general "behavior evolves first" (BEF) hypothesis and the more specific "morphology-performance-behavior-fitness" (MPBF) paradigm. Both acknowledge that selection often acts relatively directly on behavior and that when behavior evolves, other traits will as well but most with some lag. However, this proposition is exceedingly difficult to test in nature. Therefore, we studied correlated responses in the high-runner (HR) mouse selection experiment, in which four replicate lines have been bred for voluntary wheel-running behavior and compared with four nonselected control (C) lines. We analyzed a wide range of traits measured at generations 20-24 (with a focus on new data from generation 22), coinciding with the point at which all HR lines were reaching selection limits (plateaus). Significance levels (226 P values) were compared across trait types by ANOVA, and we used the positive false discovery rate to control for multiple comparisons. This meta-analysis showed that, surprisingly, the measures of performance (including maximal oxygen consumption during forced exercise) showed no evidence of having diverged between the HR and C lines, nor did any of the life history traits (e.g., litter size), whereas body mass had responded (decreased) at least as strongly as wheel running. Overall, results suggest that the HR lines of mice had evolved primarily by changes in motivation rather than performance ability at the time they were reaching selection limits. In addition, neither the BEF model nor the MPBF model of hierarchical evolution provides a particularly good fit to the HR mouse selection experiment.

Combined mechanistic and genetic modelling to benchmark body reserve traits as proxies of dairy cows' lifetime efficiency in grass-based production systems

Improving lifetime lactation efficiency of dairy cows by selection is difficult due to the complexity of this trait and the existence of genotype-by-environment interactions. This study aimed at assessing the relevance of traits derived from body reserves as lifetime efficiency indicators under contrasting nutritional environments. Given the absence of large-scale datasets covering a panel of feeding regimes, phenotypes were simulated for populations of 20 000 dairy cows using a mechanistic bioenergetic model. Ten phenotypes were computed for third-lactation cows. Analysed phenotypes comprised total milk production, lactation efficiency, BW at calving (BWcalv), DM intake (DMI) and interval between first insemination and conception. Five traits described levels and changes of body reserves at different periods during lactation. Lifetime lactation efficiency was computed for all cows (Life_Eff). Three nutritional environments were defined considering a grass-based production system with seasonal calving: a high non-limiting scenario (HS) mimicking ad libitum access to feed and two limiting environments with moderate (MS) and low (LS) feed offer. Variance components were estimated for all traits within and between environments using REML. Heritabilities estimated for milk production, lactation efficiency, BWcalv and DMI were moderate in the different environments (0.27-0.35 ± 0.04). The heritability of body reserve levels and dynamics were moderate in the HS and MS scenarios (0.23-0.30 ± 0.03) and lower in the LS scenario (0.14-0.25 ± 0.03). The heritability of Life_Eff was low in the HS environment (0.07 ± 0.01) and slightly increased in the limiting environments. All genetic correlations estimated between environments were moderate to high (≥0.66 ± 0.07), suggesting low to moderate genotype-by-environment interactions. Estimated genetic correlations were moderate between Life_Eff and body reserve levels (from 0.39 to 0.51 ± 0.08) and moderate but negative between Life_Eff and change in body reserves traits (-0.27 to -0.37 ± 0.09) in the HS environment. The genetic correlations between Life_Eff and body reserve levels increased to higher values in the limiting environments. In contrast, genetic correlations between Life_Eff and the changes in body reserves were closer to zero. In conclusion, this study showed that body reserve levels were relevant proxies of lifetime irrespective of the environment. In contrast, changes in body reserves that reflected energy mobilisation in early lactation were less informative about lifetime efficiency in environments with severe feed restrictions.

The cost of host genetic resistance on body condition: evidence from divergently selected sheep

Trade‐offs between host resistance to parasites and host growth or reproduction can occur due to allocation of limited available resources between competing demands. To predict potential trade‐offs arising from genetic selection for host resistance, a better understanding of the associated nutritional costs is required. Here, we studied resistance costs by using sheep from lines divergently selected on their resistance to a common blood‐feeding gastro‐intestinal parasite (Haemonchus contortus). First, we assessed the effects of selection for high or low host resistance on condition traits (body weight, back fat, and muscle thickness) and infection traits (parasite fecal egg excretion and loss in blood haematocrit) at various life stages, in particular during the periparturient period when resource allocation to immunity may limit host resistance. Second, we analysed the condition–infection relationship to detect a possible trade‐off, in particular during the periparturient period. We experimentally infected young females in four stages over their first 2 years of life, including twice around parturition (at 1 year and at 2 years of age). Linear mixed‐model analyses revealed a large and consistent between‐line difference in infection traits during growth and outside of the periparturient period, whereas this difference was strongly attenuated during the periparturient period. Despite their different responses to infection, lines had similar body condition traits. Using covariance decomposition, we then found that the phenotypic relationship between infection and condition was dominated by direct infection costs arising from parasite development within the host. Accounting for these within‐individual effects, a cost of resistance on body weight was detected among ewes during their first reproduction. Although this cost and the reproductive constraint on resistance are unlikely to represent a major concern for animal breeding in nutrient‐rich environments, this study provides important new insights regarding the nutritional costs of parasite resistance at different lifestages and how these may affect response to selection.

The Effect of Manipulated Prenatal Conditions on Growth, Survival, and Reproduction Throughout the Complete Life Course of a Precocial Bird

The quality of the environment individuals experience during development is commonly regarded as very influential on performance in later life. However, studies that have experimentally manipulated the early-life environment and subsequently measured individual performance in all components of fitness over the complete life course are scarce. In this study, we incubated fertile eggs of Japanese quail (Coturnix japonica) at substandard and standard incubation temperature, and monitored growth, survival, and reproduction throughout the complete life course. While embryonic development was slower and hatching success tended to be lower under substandard incubation temperature, the prenatal treatment had no effect on post-hatching growth, survival to sexual maturity, or age at first reproduction. In adulthood, body mass and investment in individual egg mass peaked at middle age, irrespective of the prenatal treatment. Individual reproduction rate declined soon after its onset, and was higher in females that lived longer. Yet, reproduction, and its senescence, were independent of the prenatal treatment. Similarly, adult survival over the complete lifespan was not affected. Hence, we did not find evidence for effects on performance beyond the developmental period that was manipulated. Our results suggest that effects of unfavorable developmental conditions on individual performance later in life could be negligible in some circumstances.