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Konuma J, Fujisawa T, Nishiyama T, Kasahara M, Shibata TF, Nozawa M, Shigenobu S, Toyoda A, Hasebe M, Sota T. Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Mol Biol Evol 2024; 41:msae110. [PMID: 38857185 PMCID: PMC11214159 DOI: 10.1093/molbev/msae110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 04/15/2024] [Accepted: 06/04/2024] [Indexed: 06/12/2024] Open
Abstract
Body shape and size diversity and their evolutionary rates correlate with species richness at the macroevolutionary scale. However, the molecular genetic mechanisms underlying the morphological diversification across related species are poorly understood. In beetles, which account for one-fourth of the known species, adaptation to different trophic niches through morphological diversification appears to have contributed to species radiation. Here, we explored the key genes for the morphological divergence of the slender to stout body shape related to divergent feeding methods on large to small snails within the genus Carabus. We show that the zinc-finger transcription factor encoded by odd-paired (opa) controls morphological variation in the snail-feeding ground beetle Carabus blaptoides. Specifically, opa was identified as the gene underlying the slender to stout morphological difference between subspecies through genetic mapping and functional analysis via gene knockdown. Further analyses revealed that changes in opa cis-regulatory sequences likely contributed to the differences in body shape and size between C. blaptoides subspecies. Among opa cis-regulatory sequences, single nucleotide polymorphisms on the transcription factor binding sites may be associated with the morphological differences between C. blaptoides subspecies. opa was highly conserved in a wide range of taxa, especially in beetles. Therefore, opa may play an important role in adaptive morphological divergence in beetles.
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Affiliation(s)
- Junji Konuma
- Department of Biology, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Tomochika Fujisawa
- Center for Data Science Education and Research, Shiga University, Hikone, Shiga, Japan
| | - Tomoaki Nishiyama
- Research Center for Experimental Modeling of Human Disease, Kanazawa University, Ishikawa, Japan
| | - Masahiro Kasahara
- Graduate School of Frontier Science, The University of Tokyo, Kashiwa, Chiba, Japan
| | | | - Masafumi Nozawa
- Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo, Japan
- Research Center for Genomics and Bioinformatics, Tokyo Metropolitan University, Hachioji, Tokyo, Japan
| | | | - Atsushi Toyoda
- Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka, Japan
| | - Mitsuyasu Hasebe
- National Institute for Basic Biology, Okazaki, Aichi, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki, Aichi, Japan
| | - Teiji Sota
- Department of Zoology, Graduate School of Science, Kyoto University, Sakyo, Kyoto, Japan
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Law CJ, Hlusko LJ, Tseng ZJ. Uncovering the mosaic evolution of the carnivoran skeletal system. Biol Lett 2024; 20:20230526. [PMID: 38263882 PMCID: PMC10806395 DOI: 10.1098/rsbl.2023.0526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 12/21/2023] [Indexed: 01/25/2024] Open
Abstract
The diversity of vertebrate skeletons is often attributed to adaptations to distinct ecological factors such as diet, locomotion, and sensory environment. Although the adaptive evolution of skull, appendicular skeleton, and vertebral column is well studied in vertebrates, comprehensive investigations of all skeletal components simultaneously are rarely performed. Consequently, we know little of how modes of evolution differ among skeletal components. Here, we tested if ecological and phylogenetic effects led to distinct modes of evolution among the cranial, appendicular and vertebral regions in extant carnivoran skeletons. Using multivariate evolutionary models, we found mosaic evolution in which only the mandible, hindlimb and posterior (i.e. last thoracic and lumbar) vertebrae showed evidence of adaptation towards ecological regimes whereas the remaining skeletal components reflect clade-specific evolutionary shifts. We hypothesize that the decoupled evolution of individual skeletal components may have led to the origination of distinct adaptive zones and morphologies among extant carnivoran families that reflect phylogenetic hierarchies. Overall, our work highlights the importance of examining multiple skeletal components simultaneously in ecomorphological analyses. Ongoing work integrating the fossil and palaeoenvironmental record will further clarify deep-time drivers that govern the carnivoran diversity we see today and reveal the complexity of evolutionary processes in multicomponent systems.
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Affiliation(s)
- Chris J. Law
- Department of Integrative Biology, University of Texas, Austin, TX, USA
- Burke Museum and Department of Biology, University of Washington, Seattle, WA, USA
- Department of Integrative Biology, University of California, Berkeley, CA, USA
| | - Leslea J. Hlusko
- National Research Center on Human Evolution (CENIEH), Burgos, Spain
| | - Z. Jack Tseng
- Department of Integrative Biology, University of California, Berkeley, CA, USA
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3
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DeLorenzo L, Mathews D, Brandon AA, Joglekar M, Carmona Baez A, Moore EC, Ciccotto PJ, Roberts NB, Roberts RB, Powder KE. Genetic basis of ecologically relevant body shape variation among four genera of cichlid fishes. Mol Ecol 2023; 32:3975-3988. [PMID: 37161914 PMCID: PMC10502943 DOI: 10.1111/mec.16977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Revised: 04/20/2023] [Accepted: 04/26/2023] [Indexed: 05/11/2023]
Abstract
Divergence in body shape is one of the most widespread and repeated patterns of morphological variation in fishes and is associated with habitat specification and swimming mechanics. Such ecological diversification is the first stage of the explosive adaptive radiation of cichlid fishes in the East African Rift Lakes. We use two hybrid crosses of cichlids (Metriaclima sp. × Aulonocara sp. and Labidochromis sp. × Labeotropheus sp., >975 animals total) to determine the genetic basis of body shape diversification that is similar to benthic-pelagic divergence across fishes. Using a series of both linear and geometric shape measurements, we identified 34 quantitative trait loci (QTL) that underlie various aspects of body shape variation. These QTL are spread throughout the genome, each explaining 3.2-8.6% of phenotypic variation, and are largely modular. Further, QTL are distinct both between these two crosses of Lake Malawi cichlids and compared to previously identified QTL for body shape in fishes such as sticklebacks. We find that body shape is controlled by many genes of small effect. In all, we find that convergent body shape phenotypes commonly observed across fish clades are most likely due to distinct genetic and molecular mechanisms.
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Affiliation(s)
- Leah DeLorenzo
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
| | - Destiny Mathews
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
| | - A. Allyson Brandon
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
| | - Mansi Joglekar
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
| | - Aldo Carmona Baez
- Department of Biological Sciences, and Genetics and Genomics Academy, North Carolina State University, Raleigh, NC 27695, USA
| | - Emily C. Moore
- Department of Biological Sciences, and Genetics and Genomics Academy, North Carolina State University, Raleigh, NC 27695, USA
- Department of Biological Sciences, University of Montana, Missoula, MT 59812, USA
| | - Patrick J. Ciccotto
- Department of Biological Sciences, and Genetics and Genomics Academy, North Carolina State University, Raleigh, NC 27695, USA
- Department of Biology, Warren Wilson College, Swannanoa, NC 28778, USA
| | - Natalie B. Roberts
- Department of Biological Sciences, and Genetics and Genomics Academy, North Carolina State University, Raleigh, NC 27695, USA
| | - Reade B. Roberts
- Department of Biological Sciences, and Genetics and Genomics Academy, North Carolina State University, Raleigh, NC 27695, USA
| | - Kara E. Powder
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
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Linden TJ, Burtner AE, Rickman J, McFeely A, Santana SE, Law CJ. Scaling patterns of body plans differ among squirrel ecotypes. PeerJ 2023; 11:e14800. [PMID: 36718452 PMCID: PMC9884040 DOI: 10.7717/peerj.14800] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 01/04/2023] [Indexed: 01/26/2023] Open
Abstract
Body size is often hypothesized to facilitate or constrain morphological diversity in the cranial, appendicular, and axial skeletons. However, how overall body shape scales with body size (i.e., body shape allometry) and whether these scaling patterns differ between ecological groups remains poorly investigated. Here, we test whether and how the relationships between body shape, body size, and limb lengths differ among species with different locomotor specializations, and describe the underlying morphological components that contribute to body shape evolution among squirrel (Sciuridae) ecotypes. We quantified the body size and shape of 87 squirrel species from osteological specimens held at museum collections. Using phylogenetic comparative methods, we first found that body shape and its underlying morphological components scale allometrically with body size, but these allometric patterns differ among squirrel ecotypes: chipmunks and gliding squirrels exhibited more elongate bodies with increasing body sizes whereas ground squirrels exhibited more robust bodies with increasing body size. Second, we found that only ground squirrels exhibit a relationship between forelimb length and body shape, where more elongate species exhibit relatively shorter forelimbs. Third, we found that the relative length of the ribs and elongation or shortening of the thoracic region contributes the most to body shape evolution across squirrels. Overall, our work contributes to the growing understanding of mammalian body shape evolution and how it is influenced by body size and locomotor ecology, in this case from robust subterranean to gracile gliding squirrels.
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Affiliation(s)
- Tate J. Linden
- University of Washington, Seattle, WA, United States of America
| | | | | | - Annika McFeely
- University of Washington, Seattle, WA, United States of America
| | | | - Chris J. Law
- University of Washington, Seattle, WA, United States of America,University of Texas at Austin, Austin, TX, United States of America,American Museum of Natural History, New York, NY, United States of America
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Maher AE, Burin G, Cox PG, Maddox TW, Maidment SCR, Cooper N, Schachner ER, Bates KT. Body size, shape and ecology in tetrapods. Nat Commun 2022; 13:4340. [PMID: 35896591 PMCID: PMC9329317 DOI: 10.1038/s41467-022-32028-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 07/14/2022] [Indexed: 11/17/2022] Open
Abstract
Body size and shape play fundamental roles in organismal function and it is expected that animals may possess body proportions that are well-suited to their ecological niche. Tetrapods exhibit a diverse array of body shapes, but to date this diversity in body proportions and its relationship to ecology have not been systematically quantified. Using whole-body skeletal models of 410 extinct and extant tetrapods, we show that allometric relationships vary across individual body segments thereby yielding changes in overall body shape as size increases. However, we also find statistical support for quadratic relationships indicative of differential scaling in small-medium versus large animals. Comparisons of locomotor and dietary groups highlight key differences in body proportions that may mechanistically underlie occupation of major ecological niches. Our results emphasise the pivotal role of body proportions in the broad-scale ecological diversity of tetrapods. Here, the authors examine how body size, shape, and segment proportions correspond to ecology in models of 410 tetrapods. They find variable allometric relationships, differential scaling in small and large animals, and body proportions as a potential niche occupation mechanism.
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Affiliation(s)
- Alice E Maher
- Department of Musculoskeletal & Ageing Science, Institute of Life Course & Medical Sciences, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK.
| | - Gustavo Burin
- Natural History Museum, London, Cromwell Road, London, SW7 5BD, UK
| | - Philip G Cox
- Department of Archaeology and Hull York Medical School, University of York, PalaeoHub, Wentworth Way, Heslington, York, YO10 5DD, UK
| | - Thomas W Maddox
- School of Veterinary Science, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Small Animal Teaching Hospital, Leahurst Campus, Chester High Road, Neston, CH64 7TE, UK
| | - Susannah C R Maidment
- Department of Earth Sciences, Natural History Museum, London, Cromwell Road, London, SW7 5BD, UK
| | - Natalie Cooper
- Natural History Museum, London, Cromwell Road, London, SW7 5BD, UK
| | - Emma R Schachner
- Department of Cell Biology & Anatomy, School of Medicine, Louisiana State University Health Sciences Center, New Orleans, LA, USA
| | - Karl T Bates
- Department of Musculoskeletal & Ageing Science, Institute of Life Course & Medical Sciences, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK
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7
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Hartstone-Rose A, Dickinson E, Deutsch AR, Worden N, Hirschkorn GA. Masticatory muscle architectural correlates of dietary diversity in Canidae, Ursidae, and across the order Carnivora. Anat Rec (Hoboken) 2021; 305:477-497. [PMID: 34449131 DOI: 10.1002/ar.24748] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 06/17/2021] [Accepted: 07/15/2021] [Indexed: 01/11/2023]
Abstract
Carnivorans represent extreme ecomorphological diversity, encompassing remarkable variation in form, habitat, and diet. The relationship between the masticatory musculature and dietary ecology has been explored in a number of carnivoran lineages, including felids and the superfamily Musteloidea. In this study, we present novel architectural data on two additional carnivoran families-Ursidae and Canidae-and supplement these previous studies with additional felid, musteloid, herpestid, hyaenid, and viverrid taxa (a total of 53 species across 10 families). Gross dissection data were collected following a standardized protocol-sharp dissection followed by chemical digestion. Summed jaw adductor forces were also transformed into bite force estimates (BF) using osteologically calculated leverages. All data were linearized, log-transformed, and size-adjusted using two proxies for each taxon-body mass (BM) and cranial geometric mean-to assess relative scaling trends. These architectural data were then analyzed in the context of dietary ecology to examine the impact of dietary size (DS) and dietary mechanical properties (DMP). Muscle mass, physiological cross-sectional area, and BF scaled with isometry or positive allometry in all cases, whereas fascicle lengths (FLs) scaled with isometry or negative allometry. With respect to diet, BM-adjusted FLs were strongly correlated with DS in musteloids, but not in any other lineage. The relationship between size-adjusted BF and DMP was also significant within musteloids, and across the sample as a whole, but not within other individual lineages. This interfamilial trend may reflect the increased morphological and dietary diversity of musteloids relative to other carnivoran groups.
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Affiliation(s)
- Adam Hartstone-Rose
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA
| | - Edwin Dickinson
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA
| | - Ashley R Deutsch
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA
| | - Nikole Worden
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA
| | - Gabrielle A Hirschkorn
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA
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