Explaining the doubling of N2 O emissions under elevated CO2 in the Giessen FACE via in-field 15 N tracing

Warming-Induced Stimulation of Soil N2O Emissions Counteracted by Elevated CO2 from Nine-Year Agroecosystem Temperature and Free Air Carbon Dioxide Enrichment

Globally, agricultural soils account for approximately one-third of anthropogenic emissions of the potent greenhouse gas and stratospheric ozone-depleting substance nitrous oxide (N2O). Emissions of N2O from agricultural soils are affected by a number of global change factors, such as elevated air temperatures and elevated atmospheric carbon dioxide (CO2). Yet, a mechanistic understanding of how these climatic factors affect N2O emissions in agricultural soils remains largely unresolved. Here, we investigate the soil N2O emission pathway using a 15N tracing approach in a nine-year field experiment using a combined temperature and free air carbon dioxide enrichment (T-FACE). We show that the effect of CO2 enrichment completely counteracts warming-induced stimulation of both nitrification- and denitrification-derived N2O emissions. The elevated CO2 induced decrease in pH and labile organic nitrogen (N) masked the stimulation of organic carbon and N by warming. Unexpectedly, both elevated CO2 and warming had little effect on the abundances of the nitrifying and denitrifying genes. Overall, our study confirms the importance of multifactorial experiments to understand N2O emission pathways from agricultural soils under climate change. This better understanding is a prerequisite for more accurate models and the development of effective options to combat climate change.

Pollutant removal in an experimental bioretention cell situated in a northern Chinese sponge city

To assess the viability and effectiveness of bioretention cell in enhancing rainwater resource utilization within sponge cities, this study employs field monitoring, laboratory testing, and statistical analysis to evaluate the water purification capabilities of bioretention cell. Findings indicate a marked purification impact on surface runoff, with removal efficiencies of 59.81% for suspended solids (SS), 39.01% for chemical oxygen demand (COD), 37.53% for ammonia nitrogen (NH3-N), and 30.49% for total phosphorus (TP). The treated water largely complies with rainwater reuse guidelines and tertiary sewage discharge standards. Notably, while previous research in China has emphasized water volume control in sponge city infrastructures, less attention has been given to the qualitative aspects and field-based evaluations. This research not only fills that gap but also offers valuable insights and practical implications for bioretention cell integration into sponge city development. Moreover, the methodology and outcomes of this study serve as a benchmark for future sponge city project assessments, offering guidance to relevant authorities.

Elevated atmospheric CO2 concentrations caused a shift of the metabolically active microbiome in vineyard soil

BACKGROUND

Elevated carbon dioxide concentrations (eCO₂), one of the main causes of climate change, have several consequences for both vine and cover crops in vineyards and potentially also for the soil microbiome. Hence soil samples were taken from a vineyard free-air CO₂ enrichment (VineyardFACE) study in Geisenheim and examined for possible changes in the soil active bacterial composition (cDNA of 16S rRNA) using a metabarcoding approach. Soil samples were taken from the areas between the rows of vines with and without cover cropping from plots exposed to either eCO₂ or ambient CO₂ (aCO₂).

RESULTS

Diversity indices and redundancy analysis (RDA) demonstrated that eCO₂ changed the active soil bacterial diversity in grapevine soil with cover crops (p-value 0.007). In contrast, the bacterial composition in bare soil was unaffected. In addition, the microbial soil respiration (p-values 0.04-0.003) and the ammonium concentration (p-value 0.003) were significantly different in the samples where cover crops were present and exposed to eCO₂. Moreover, under eCO₂ conditions, qPCR results showed a significant decrease in 16S rRNA copy numbers and transcripts for enzymes involved in N₂ fixation and NO₂^- reduction were observed using qPCR. Co-occurrence analysis revealed a shift in the number, strength, and patterns of microbial interactions under eCO₂ conditions, mainly represented by a reduction in the number of interacting ASVs and the number of interactions.

CONCLUSIONS

The results of this study demonstrate that eCO₂ concentrations changed the active soil bacterial composition, which could have future influence on both soil properties and wine quality.

Organic matter contributions to nitrous oxide emissions following nitrate addition are not proportional to substrate-induced soil carbon priming

The addition of carbon (C) substrate often modifies the rate of soil organic matter (SOM) decomposition. This is known as the priming effect. Nitrous oxide (N₂O) emissions from soil are also linked to C substrate dynamics; however, the relationship between the priming effect and N₂O emissions from soil is not understood. This study aimed to investigate the effects of C and N substrate addition on the linkages between SOM priming and N₂O emissions. We applied ¹³C-labelled substrates (acetate, butyrate, glucose; 80 μg C g^-1), with water as a control, and ¹⁵N-labelled N (300 μg N g^-1 soil, potassium nitrate) to three different soils, and, after 3 days, we measured the effects on the priming of SOM and sources of N₂O emission. Carbon substrate addition increased both CO₂- and SOM-derived N₂O emissions in the presence of exogenous N. Emissions of CO₂ and N₂O from soils with added glucose (mean ± standard deviation, 0.73 ± 0.13 μmol m^-2 s^-1 and 21.4 ± 12.1 mg N m^-2 h^-1) were higher (p < 0.05) than those from soils treated with acetate (0.64 ± 0.11 μmol m^-2 s^-1 and 10.9 ± 6.5 mg N m^-2 h^-1) or butyrate (0.61 ± 0.11 μmol m^-2 s^-1 and 11.0 ± 6.6 mg N m^-2 h^-1), respectively. Acetate addition induced a stronger (p < 0.05) priming effect on soil C (0.07 ± 0.09 μmol C m^-2 s^-1) than that for glucose (0.02 ± 0.10 μmol C m^-2 s^-1), while butyrate addition resulted in negative priming (-0.09 ± 0.05 μmol C m^-2 s^-1). SOM-derived N₂O emissions were relatively low from soils with butyrate addition (1.4 ± 1.5 mg N m^-2 h^-1) compared with acetate (2.9 ± 2.3 mg N m^-2 h^-1) or glucose (9.2 ± 4.5 mg N m^-2 h^-1). There was no clear relationship between the priming effect and SOM-derived N₂O emissions. The observed priming effect related to the potential electron donor supply of the C substrates was not observed. There is a need to further examine the role of soil priming in relation to soil N₂O emissions.

Soil metatranscriptome demonstrates a shift in C, N, and S metabolisms of a grassland ecosystem in response to elevated atmospheric CO2

Soil organisms play an important role in the equilibrium and cycling of nutrients. Because elevated CO₂ (eCO₂) affects plant metabolism, including rhizodeposition, it directly impacts the soil microbiome and microbial processes. Therefore, eCO₂ directly influences the cycling of different elements in terrestrial ecosystems. Hence, possible changes in the cycles of carbon (C), nitrogen (N), and sulfur (S) were analyzed, alongside the assessment of changes in the composition and structure of the soil microbiome through a functional metatranscriptomics approach (cDNA from mRNA) from soil samples taken at the Giessen free-air CO₂ enrichment (Gi-FACE) experiment. Results showed changes in the expression of C cycle genes under eCO₂ with an increase in the transcript abundance for carbohydrate and amino acid uptake, and degradation, alongside an increase in the transcript abundance for cellulose, chitin, and lignin degradation and prokaryotic carbon fixation. In addition, N cycle changes included a decrease in the transcript abundance of N₂O reductase, involved in the last step of the denitrification process, which explains the increase of N₂O emissions in the Gi-FACE. Also, a shift in nitrate (NO3-) metabolism occurred, with an increase in transcript abundance for the dissimilatory NO3- reduction to ammonium (NH4+) (DNRA) pathway. S metabolism showed increased transcripts for sulfate (SO42-) assimilation under eCO₂ conditions. Furthermore, soil bacteriome, mycobiome, and virome significantly differed between ambient and elevated CO₂ conditions. The results exhibited the effects of eCO₂ on the transcript abundance of C, N, and S cycles, and the soil microbiome. This finding showed a direct connection between eCO₂ and the increased greenhouse gas emission, as well as the importance of soil nutrient availability to maintain the balance of soil ecosystems.

Elevated Atmospheric CO2 Modifies Mostly the Metabolic Active Rhizosphere Soil Microbiome in the Giessen FACE Experiment

Elevated levels of atmospheric CO2 lead to the increase of plant photosynthetic rates, carbon inputs into soil and root exudation. In this work, the effects of rising atmospheric CO2 levels on the metabolic active soil microbiome have been investigated at the Giessen free-air CO2 enrichment (Gi-FACE) experiment on a permanent grassland site near Giessen, Germany. The aim was to assess the effects of increased C supply into the soil, due to elevated CO2, on the active soil microbiome composition. RNA extraction and 16S rRNA (cDNA) metabarcoding sequencing were performed from bulk and rhizosphere soils, and the obtained data were processed for a compositional data analysis calculating diversity indices and differential abundance analyses. The structure of the metabolic active microbiome in the rhizospheric soil showed a clear separation between elevated and ambient CO2 (p = 0.002); increased atmospheric CO2 concentration exerted a significant influence on the microbiomes differentiation (p = 0.01). In contrast, elevated CO2 had no major influence on the structure of the bulk soil microbiome (p = 0.097). Differential abundance results demonstrated that 42 bacterial genera were stimulated under elevated CO2. The RNA-based metabarcoding approach used in this research showed that the ongoing atmospheric CO2 increase of climate change will significantly shift the microbiome structure in the rhizosphere.

Plant Functional Types Differ in Their Long-term Nutrient Response to eCO2 in an Extensive Grassland

Increasing atmospheric CO2 enhances plant biomass production and may thereby change nutrient concentrations in plant tissues. The objective of this study was to identify the effect of elevated atmospheric CO2 concentrations on nutrient concentrations of grassland biomass that have been grown for 16 years (1998–2013). The grassland biomass grown at the extensively managed Giessen FACE experiment, fumigated with ambient and elevated CO2 (aCO2; eCO2; +20%) was harvested twice annually. Concentrations of C, N, P, K, Ca, Mg, Mn, Fe, Cu and Zn were determined separately for grasses, forbs and legumes. Under eCO2, the concentration of N was reduced in grasses, Ca was reduced in grasses and forbs, P was reduced in grasses but increased in legumes, Mg concentration was reduced in grasses, forbs and legumes and K was reduced in grasses but increased in forbs. The nutrient yield (in g nutrient yield of an element per m−2) of most elements indicated negative yield responses at a zero biomass response to eCO2 for grasses. K and Zn nutrient yields responded positively to eCO2 in forbs and Mn and Fe responded positively in forbs and legumes. The results suggest that under eCO2 the nutrient concentrations were not diluted by the CO2 fertilization effect. Rather, altered plant nutrient acquisitions via changed physiological mechanisms prevail for increased C assimilation under eCO2. Furthermore, other factors such as water or nutrient availability affected plant nutrient concentrations under eCO2.

Seasonality affects function and complexity but not diversity of the rhizosphere microbiome in European temperate grassland

Knowledge on how grassland microbiota responds on gene expression level to winter-summer change of seasons is poor. Here, we used a combination of quantitative PCR-based assays and metatranscriptomics to assess the impact of seasonality on the rhizospheric microbiota in temperate European grassland. Bacteria dominated, being at least one order of magnitude more abundant than fungi. Despite a fivefold summer increase in bacterial community size, season had nearly no effect on microbiome diversity. It, however, had a marked impact on taxon-specific gene expression, with 668 genes significantly differing in relative transcript abundance between winter and summer samples. Acidobacteria, Bacteroidetes, Planctomycetes, and Proteobacteria showed a greater relative gene expression activity in winter, while mRNA of Actinobacteria and Fungi was, relative to other taxa, significantly enriched in summer. On functional level, mRNA involved in protein turnover (e.g., transcription and translation) and cell maintenance (e.g., chaperones that protect against cell freezing damage such as GroEL and Hsp20) were highly enriched in winter. By contrast, mRNA involved in central carbon and amino acid metabolisms had a greater abundance in summer. Among carbohydrate-active enzymes, transcripts of GH36 family (hemicellulases) were highly enriched in winter, while those encoding GH3 family (cellulases) showed increased abundance in summer. The seasonal differences in plant polymer breakdown were linked to a significantly greater microbial network complexity in winter than in summer. Conceptually, the winter-summer change in microbiome functioning can be well explained by a shift from stress-tolerator to high-yield life history strategy.

Assessing the impacts of diversified crop rotation systems on yields and nitrous oxide emissions in Canada using the DNDC model

Process-based models are effective tools for assessing the sustainability of agricultural productivity and environmental health under various management practices and rotation systems. The objectives of this study were to (1) calibrate and evaluate the DeNitrification-DeComposition (DNDC) model using measurements of yields, nitrogen (N) uptake, soil inorganic N, soil temperature, soil moisture and nitrous oxide (N₂O) emissions under long-term fertilized continuous corn (CC) and corn-oats-alfalfa-alfalfa (COAA) rotation systems in southwest Ontario from 1959 to 2015, Canada, and (2) explore the impacts of four diverse rotation systems (CC, COAA, corn-soybean-corn-soybean (CSCS) and corn-soybean-winter wheat (CSW)) on corn yields and annual N₂O emissions under long-term climate variability. DNDC demonstrated "good" performance in simulating corn, oats and alfalfa yield (normalized root mean square error (nRMSE) < 20%, Nash-Sutcliffe efficiency (NSE) > 0.5 and index of agreement (d) > 0.8). The model provided "fair" to "good" simulations for corn N uptake and soil inorganic N (NSE > 0.2 and d > 0.8), and also daily soil temperature and soil moisture (nRMSE <30% and d > 0.7) for both calibration and validation periods. The model demonstrated "good" performance in estimating daily and cumulative N₂O emissions from both the continuous and rotational corn, whereas it produced "poor" to "good" predictions for N₂O emissions from the rotational oats and alfalfa crops, however, the emissions from these crops were very low and the relative magnitude of these emissions between all crops investigated were well predicted. The lowest N₂O emissions were from COAA followed by CSCS, CSW then CC. The highest corn yields were from COAA, followed by CSW, CSCS, then CC. This study highlights how modelling approaches can help improve the understanding of the impacts of diversified rotations on crop production and greenhouse gas emissions and contribute towards developing policies aimed at improving the sustainability and resiliency of cropping systems.

What can we learn from N2 O isotope data? - Analytics, processes and modelling

The isotopic composition of nitrous oxide (N2 O) provides useful information for evaluating N2 O sources and budgets. Due to the co-occurrence of multiple N2 O transformation pathways, it is, however, challenging to use isotopic information to quantify the contribution of distinct processes across variable spatiotemporal scales. Here, we present an overview of recent progress in N2 O isotopic studies and provide suggestions for future research, mainly focusing on: analytical techniques; production and consumption processes; and interpretation and modelling approaches. Comparing isotope-ratio mass spectrometry (IRMS) with laser absorption spectroscopy (LAS), we conclude that IRMS is a precise technique for laboratory analysis of N2 O isotopes, while LAS is more suitable for in situ/inline studies and offers advantages for site-specific analyses. When reviewing the link between the N2 O isotopic composition and underlying mechanisms/processes, we find that, at the molecular scale, the specific enzymes and mechanisms involved determine isotopic fractionation effects. In contrast, at plot-to-global scales, mixing of N2 O derived from different processes and their isotopic variability must be considered. We also find that dual isotope plots are effective for semi-quantitative attribution of co-occurring N2 O production and reduction processes. More recently, process-based N2 O isotopic models have been developed for natural abundance and 15 N-tracing studies, and have been shown to be effective, particularly for data with adequate temporal resolution. Despite the significant progress made over the last decade, there is still great need and potential for future work, including development of analytical techniques, reference materials and inter-laboratory comparisons, further exploration of N2 O formation and destruction mechanisms, more observations across scales, and design and validation of interpretation and modelling approaches. Synthesizing all these efforts, we are confident that the N2 O isotope community will continue to advance our understanding of N2 O transformation processes in all spheres of the Earth, and in turn to gain improved constraints on regional and global budgets.

Elevated temperature shifts soil N cycling from microbial immobilization to enhanced mineralization, nitrification and denitrification across global terrestrial ecosystems

We assessed the response of soil microbial nitrogen (N) cycling and associated functional genes to elevated temperature at the global scale. A meta-analysis of 1,270 observations from 134 publications indicated that elevated temperature decreased soil microbial biomass N and increased N mineralization rates, both in the presence and absence of plants. These findings infer that elevated temperature drives microbially mediated N cycling processes from dominance by anabolic to catabolic reaction processes. Elevated temperature increased soil nitrification and denitrification rates, leading to an increase in N₂ O emissions of up to 227%, whether plants were present or not. Rates of N mineralization, denitrification and N₂ O emission demonstrated significant positive relationships with rates of CO₂ emissions under elevated temperatures, suggesting that microbial N cycling processes were associated with enhanced microbial carbon (C) metabolism due to soil warming. The response in the abundance of relevant genes to elevated temperature was not always consistent with changes in N cycling processes. While elevated temperature increased the abundances of the nirS gene with plants and nosZ genes without plants, there was no effect on the abundances of the ammonia-oxidizing archaea amoA gene, ammonia-oxidizing bacteria amoA and nirK genes. This study provides the first global-scale assessment demonstrating that elevated temperature shifts N cycling from microbial immobilization to enhanced mineralization, nitrification and denitrification in terrestrial ecosystems. These findings infer that elevated temperatures have a profound impact on global N cycling processes with implications of a positive feedback to global climate and emphasize the close linkage between soil microbial C and N cycling.

Shifts in the Composition and Activities of Denitrifiers Dominate CO2 Stimulation of N2O Emissions

Elevated atmospheric CO₂ (eCO₂) often increases soil N₂O emissions, but the underlying mechanisms remain largely unknown. One hypothesis suggests that high N₂O emissions may stem from increased denitrification induced by CO₂ enhancement of plant carbon (C) allocation belowground. However, direct evidence illustrating linkages among N₂O emissions, plant C allocation, and denitrifying microbes under eCO₂ is still lacking. We examined the impact of eCO₂ on plant C allocation to roots and their associated arbuscular mycorrhizal fungi and its subsequent effects on N₂O emissions and denitrifying microbes in the presence of two distinct N sources, ammonium nitrogen (NH₄⁺-N) and nitrate nitrogen (NO₃^--N). Our results showed that the form of the N inputs dominated the effects of eCO₂ on N₂O emissions: eCO₂ significantly increased N₂O emissions with NO₃^--N inputs but had no effect with NH₄⁺-N inputs. eCO₂ increased plant biomass N more with NH₄⁺-N than with NO₃^--N inputs, likely reducing microbial access to available N under NH₄⁺-N inputs and/or contributing to higher N₂O emissions under NO₃^--N inputs. eCO₂ enhanced root and mycorrhizal N uptake and also increased N₂O emissions under NO₃^--N inputs. Further, eCO₂ enhancement of N₂O emissions under NO₃^--N inputs concurred with a shift in the soil denitrifier community composition in favor of N₂O-producing (nirK- and nirS-type) over N₂O-consuming (nosZ-type) denitrifiers. Together, these results indicate that eCO₂ stimulated N₂O emissions mainly through altering plant N preference in favor of NH₄⁺ over NO₃^- and thus stimulating soil denitrifiers and their activities. These findings suggest that effective management of N sources may mitigate N₂O emissions by negating the eCO₂ stimulation of soil denitrifying microbes and their activities.

Contrasting impact of elevated atmospheric CO2 on nitrogen cycle in eutrophic water with or without Eichhornia crassipes (Mart.) Solms

The elevation of atmospheric CO₂ is an inevitable trend that would lead to significant impact on the interrelated carbon and nitrogen cycles through microbial activities in the aquatic ecosystem. Eutrophication has become a common trophic state of inland waters throughout the world, but how the elevated CO₂ affects N cycles in such eutrophic water with algal bloom, and how vegetative restoration helps to mitigate N₂O emission remains unknown. We conducted the experiments to investigate the effects of ambient and elevated atmospheric CO₂ (a[CO₂], e[CO₂]; 400, 800 μmol﹒mol^-1) with and without the floating aquatic plant, Eichhornia crassipes (Mart.) Solms, on N-transformation in eutrophic water using the ¹⁵N tracer method. The nitrification could be slightly inhibited by e[CO₂], due mainly to the competition for dissolved inorganic carbon between algae and nitrifiers. The e[CO₂] promoted denitrification and N₂O emissions from eutrophic water without growth of plants, leading to aggravation of greenhouse effect and forming a vicious cycle. However, growth of the aquatic plant, Eichhornia crassipes, slightly promoted nitrification, but reduced N₂O emissions from eutrophic water under e[CO₂] conditions, thereby attenuating the negative effect of e[CO₂] on N₂O emissions. In the experiment, the N transformation was influenced by many factors such as pH, DO and algae density, except e[CO₂] and plant presence. The pH could be regulated through diurnal photosynthesis and respiration of algae and mitigated the acidification of water caused by e[CO₂], leading to an appropriate pH range for both nitrifying and denitrifying microbes. Algal respiration at night could consume DO and enhance abundance of denitrifying functional genes (nirK, nosZ) in water, which was also supposed to be a critical factor affecting denitrification and N₂O emissions. This study clarifies how the greenhouse effect caused by e[CO₂] mediates N biogeochemical cycle in the aquatic ecosystem, and how vegetative restoration mitigates greenhouse gas emission.

Global soil nitrous oxide emissions since the preindustrial era estimated by an ensemble of terrestrial biosphere models: Magnitude, attribution, and uncertainty

Our understanding and quantification of global soil nitrous oxide (N₂ O) emissions and the underlying processes remain largely uncertain. Here, we assessed the effects of multiple anthropogenic and natural factors, including nitrogen fertilizer (N) application, atmospheric N deposition, manure N application, land cover change, climate change, and rising atmospheric CO₂ concentration, on global soil N₂ O emissions for the period 1861-2016 using a standard simulation protocol with seven process-based terrestrial biosphere models. Results suggest global soil N₂ O emissions have increased from 6.3 ± 1.1 Tg N₂ O-N/year in the preindustrial period (the 1860s) to 10.0 ± 2.0 Tg N₂ O-N/year in the recent decade (2007-2016). Cropland soil emissions increased from 0.3 Tg N₂ O-N/year to 3.3 Tg N₂ O-N/year over the same period, accounting for 82% of the total increase. Regionally, China, South Asia, and Southeast Asia underwent rapid increases in cropland N₂ O emissions since the 1970s. However, US cropland N₂ O emissions had been relatively flat in magnitude since the 1980s, and EU cropland N₂ O emissions appear to have decreased by 14%. Soil N₂ O emissions from predominantly natural ecosystems accounted for 67% of the global soil emissions in the recent decade but showed only a relatively small increase of 0.7 ± 0.5 Tg N₂ O-N/year (11%) since the 1860s. In the recent decade, N fertilizer application, N deposition, manure N application, and climate change contributed 54%, 26%, 15%, and 24%, respectively, to the total increase. Rising atmospheric CO₂ concentration reduced soil N₂ O emissions by 10% through the enhanced plant N uptake, while land cover change played a minor role. Our estimation here does not account for indirect emissions from soils and the directed emissions from excreta of grazing livestock. To address uncertainties in estimating regional and global soil N₂ O emissions, this study recommends several critical strategies for improving the process-based simulations.