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Shin CP, Allmon WD. How we study cryptic species and their biological implications: A case study from marine shelled gastropods. Ecol Evol 2023; 13:e10360. [PMID: 37680961 PMCID: PMC10480071 DOI: 10.1002/ece3.10360] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 06/10/2023] [Accepted: 07/13/2023] [Indexed: 09/09/2023] Open
Abstract
Methodological and biological considerations are intertwined when studying cryptic species. A potentially large component of modern biodiversity, the frequency of cryptic species among taxonomic groups is not well documented. The term "cryptic species" is imprecisely used in scientific literature, causing ambiguity when interpreting their evolutionary and ecological significance. This study reviews how cryptic species have been defined, discussing implications for taxonomy and biology, and explores these implications with a case study based on recently published literature on extant shelled marine gastropods. Reviewed gastropods were recorded by species. Records of cryptic gastropods were presented by authors with variable levels of confidence but were difficult to disentangle from inherent biases in the study effort. These complexities notwithstanding, most gastropod species discussed were not cryptic. To the degree that this review's sample represents extinct taxa, the results suggest that a high proportion of shelled marine gastropod species are identifiable for study in the fossil record. Much additional work is needed to provide a more adequate understanding of the relative frequency of cryptic species in shelled marine gastropods, which should start with more explicit definitions and targeted case studies.
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Affiliation(s)
- Caren P. Shin
- Department of Earth and Atmospheric SciencesCornell UniversityIthacaNew YorkUSA
- Paleontological Research InstitutionIthacaNew YorkUSA
| | - Warren D. Allmon
- Department of Earth and Atmospheric SciencesCornell UniversityIthacaNew YorkUSA
- Paleontological Research InstitutionIthacaNew YorkUSA
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2
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Vaux F, Gemmell MR, Hills SFK, Marshall BA, Beu AG, Crampton JS, Trewick SA, Morgan-Richards M. Lineage Identification Affects Estimates of Evolutionary Mode in Marine Snails. Syst Biol 2020; 69:1106-1121. [PMID: 32163159 DOI: 10.1093/sysbio/syaa018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Revised: 02/13/2020] [Accepted: 03/09/2020] [Indexed: 11/14/2022] Open
Abstract
In order to study evolutionary pattern and process, we need to be able to accurately identify species and the evolutionary lineages from which they are derived. Determining the concordance between genetic and morphological variation of living populations, and then directly comparing extant and fossil morphological data, provides a robust approach for improving our identification of lineages through time. We investigate genetic and shell morphological variation in extant species of Penion marine snails from New Zealand, and extend this analysis into deep time using fossils. We find that genetic and morphological variation identify similar patterns and support most currently recognized extant species. However, some taxonomic over-splitting is detected due to shell size being a poor trait for species delimitation, and we identify incorrect assignment of some fossil specimens. We infer that a single evolutionary lineage (Penion sulcatus) has existed for 22 myr, with most aspects of shell shape and shell size evolving under a random walk. However, by removing samples previously classified as the extinct species P. marwicki, we instead detect morphological stasis for one axis of shell shape variation. This result demonstrates how lineage identification can change our perception of evolutionary pattern and process. [Genotyping by sequencing; geometric morphometrics; morphological evolution; Neogastropoda; phenotype; speciation; stasis.].
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Affiliation(s)
- Felix Vaux
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand.,Department of Fisheries and Wildlife, Coastal Oregon Marine Experiment Station, Hatfield Marine Science Center, Oregon State University, 2030 SE Marine Science Dr, Newport, OR 97365, USA.,Department of Zoology, University of Otago, 340 Great King Street, Dunedin 9016, Otago, New Zealand
| | - Michael R Gemmell
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
| | - Simon F K Hills
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
| | - Bruce A Marshall
- Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand
| | - Alan G Beu
- GNS Science, PO Box 30-368, Lower Hutt 5011, New Zealand
| | - James S Crampton
- School of Geography, Environment & Earth Sciences, Victoria University of Wellington, PO Box 600, Wellington 6012, New Zealand
| | - Steven A Trewick
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
| | - Mary Morgan-Richards
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
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Gemmell MR, Trewick SA, Hills SFK, Morgan‐Richards M. Phylogenetic topology and timing of New Zealand olive shells are consistent with punctuated equilibrium. J ZOOL SYST EVOL RES 2020. [DOI: 10.1111/jzs.12342] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael R. Gemmell
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
| | - Steven A. Trewick
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
| | - Simon F. K. Hills
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
| | - Mary Morgan‐Richards
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
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Evolutionary lineages of marine snails identified using molecular phylogenetics and geometric morphometric analysis of shells. Mol Phylogenet Evol 2018; 127:626-637. [PMID: 29913310 DOI: 10.1016/j.ympev.2018.06.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Revised: 06/05/2018] [Accepted: 06/05/2018] [Indexed: 01/12/2023]
Abstract
The relationship between morphology and inheritance is of perennial interest in evolutionary biology and palaeontology. Using three marine snail genera Penion, Antarctoneptunea and Kelletia, we investigate whether systematics based on shell morphology accurately reflect evolutionary lineages indicated by molecular phylogenetics. Members of these gastropod genera have been a taxonomic challenge due to substantial variation in shell morphology, conservative radular and soft tissue morphology, few known ecological differences, and geographical overlap between numerous species. Sampling all sixteen putative taxa identified across the three genera, we infer mitochondrial and nuclear ribosomal DNA phylogenetic relationships within the group, and compare this to variation in adult shell shape and size. Results of phylogenetic analysis indicate that each genus is monophyletic, although the status of some phylogenetically derived and likely more recently evolved taxa within Penion is uncertain. The recently described species P. lineatus is supported by genetic evidence. Morphology, captured using geometric morphometric analysis, distinguishes the genera and matches the molecular phylogeny, although using the same dataset, species and phylogenetic subclades are not identified with high accuracy. Overall, despite abundant variation, we find that shell morphology accurately reflects genus-level classification and the corresponding deep phylogenetic splits identified in this group of marine snails.
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Cheetham AH, Jackson JBC, Hayek LC. QUANTITATIVE GENETICS OF BRYOZOAN PHENOTYPIC EVOLUTION. II. ANALYSIS OF SELECTION AND RANDOM CHANGE IN FOSSIL SPECIES USING RECONSTRUCTED GENETIC PARAMETERS. Evolution 2017; 48:360-375. [DOI: 10.1111/j.1558-5646.1994.tb01317.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/1993] [Accepted: 05/18/1993] [Indexed: 11/30/2022]
Affiliation(s)
- Alan H. Cheetham
- Department of Paleobiology National Museum of Natural History, Smithsonian Institution Washington, D.C. 20560
| | - Jeremy B. C. Jackson
- Center for Paleoecology Smithsonian Tropical Research Institute Apartado 2072 Balboa Republic of Panama
| | - Lee‐Ann C. Hayek
- Statistics and Mathematics Smithsonian Institution Washington, D.C. 20560
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Cheetham AH, Jackson JBC, Hayek LAC. QUANTITATIVE GENETICS OF BRYOZOAN PHENOTYPIC EVOLUTION. I. RATE TESTS FOR RANDOM CHANGE VERSUS SELECTION IN DIFFERENTIATION OF LIVING SPECIES. Evolution 2017; 47:1526-1538. [PMID: 28564886 DOI: 10.1111/j.1558-5646.1993.tb02173.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/1992] [Accepted: 02/04/1993] [Indexed: 11/27/2022]
Abstract
The possible roles of random genetic change and natural selection in bryozoan speciation were analyzed using quantitative genetic methods on breeding data for traits of skeletal morphology in two closely related species of the cheilostome Stylopoma. The hypothesis that morphologic differences between the species are caused entirely by mutation and genetic drift could not be rejected for reasonable rates of mutation maintained for as few as 103 to 104 generations. Divergence times this short or shorter are consistent with the abrupt appearances of many invertebrate species in the fossil record, commonly followed by millions of years of morphologic stasis. To produce these differences over 103 generations or fewer, directional selection acting alone would require unrealistically high levels of minimum selective mortality throughout divergence. Thus, selection is unnecessary to explain the divergence of these species, except as a means of accelerating the effects of random genetic change on shorter time scales (directional selection), or decelerating them over longer ones (stabilizing selection). These results are consistent with a variety of models of phenotypic evolution involving random shifts between multiple adaptive peaks. Similar results were obtained by substituting trait heritabilities and genetic covariances reconstructed by partitioning within- and among-colony phenotypic variance in place of the values based on breeding data. Quantitative genetic analysis of speciation in fossil bryozoan lineages is thus justified.
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Affiliation(s)
- Alan H Cheetham
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560
| | - Jeremy B C Jackson
- Smithsonian Tropical Research Institute, Apartado 2072, Balboa, Republic of Panama
| | - Lee-Ann C Hayek
- Statistics and Mathematics, Smithsonian Institution, Washington, DC, 20560
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Ma N, Hu G, Zhang J, Hua B. Morphological variation of the Scorpionfly Panorpa obtusa Cheng (Mecoptera: Panorpidae) with a new synonym. PLoS One 2014; 9:e108545. [PMID: 25250880 PMCID: PMC4177224 DOI: 10.1371/journal.pone.0108545] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Accepted: 08/18/2014] [Indexed: 11/22/2022] Open
Abstract
BACKGROUND The overabundance of synonyms is an unavoidable by-product of taxonomic practice in insects. How to reduce or even eliminate synonymy has long been a great challenge for insect taxonomists. The scorpionflies Panorpa obtusa Cheng, 1949 and Panorpa leei Cheng, 1949 (Insecta: Mecoptera: Panorpidae) were originally described from Taibaishan in the Qinling Mountains with identical collection data and both are based on a single gender, the former on a male and the latter on two females. However, whether P. leei is conspecific with P. obtusa or a good species remains an unsolved problem. RESULTS On the basis of intensive morphological comparison of 93 males and 53 females of scorpionflies collected from the type locality using light and scanning electron microscopy, we found P. obtusa has considerable morphological variation (especially the wing markings and genitalia in both male and female), and Panorpa leei is totally comprised of one of the morphs of P. obtusa. CONCLUSIONS In combination with identical type localities and overlapping morphological variation, P. leei Cheng is proposed as a junior subjective synonym of P. obtusa Cheng. To avoid synonyms, taxonomists should pay more attention to individual variation and base decisions on a series of specimens to describe new species.
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Affiliation(s)
- Na Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, Entomological Museum, Northwest A & F University, Yangling, Shaanxi, China
| | - Guilin Hu
- State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, Entomological Museum, Northwest A & F University, Yangling, Shaanxi, China
| | - Junxia Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, Entomological Museum, Northwest A & F University, Yangling, Shaanxi, China
| | - Baozhen Hua
- State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, Entomological Museum, Northwest A & F University, Yangling, Shaanxi, China
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Abstract
Most marine species appear abruptly in the fossil record and persist unchanged for millions of years. Speciation and extinction commonly occur in pulses so that groups of species come and go as ecological units that dominate the seascape for millions of years. Dramatic turnover of mollusc, coral and planktonic foraminifera species occurred throughout tropical America about two million years ago in apparent response to the onset of northern hemisphere glaciation. In contrast, subsequent glacial cycles, temperature fluctuations and sea-level change had little lasting biological effect. There is no necessary correlation between the magnitude of environmental change and the subsequent ecological and evolutionary response.
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Abstract
The intense controversies that surrounded the youth of punctuated equilibrium have helped it mature to a useful extension of evolutionary theory. As a complement to phyletic gradualism, its most important implications remain the recognition of stasis as a meaningful and predominant pattern within the history of species, and in the recasting of macroevolution as the differential success of certain species (and their descendants) within clades.
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Affiliation(s)
- S J Gould
- Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts 02138
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