Developmental instability of vascular plants in contrasting microclimates at ‘Evolution Canyon’

Conserved ecophysiology despite disparate microclimatic conditions in a gecko

Microscale differences in the habitats organisms occupy can influence selection regimes and promote intraspecific variation of traits. Temperature-dependent traits can be locally adapted to climatic conditions or be highly conserved and insensitive to directional selection under all but the most extreme regimes, and thus be similar across populations. The opposing slopes of Nahal Oren canyon in the Carmel Mountains, Israel, are strikingly different: the south-facing slope receives intensive solar radiation, is hot and supports mostly annual vegetation, whereas the north-facing slope is ~10°C cooler, more humid, and supports Mediterranean woodland. We examined whether these differences manifest in the thermal physiology of a common gecko species Ptyodactylus guttatus in controlled laboratory conditions. We predicted that geckos from the hotter south-facing slope would prefer higher temperatures, have faster gut passage times, lower metabolic and evaporative water loss rates, and start diel activity earlier compared with north-facing slope conspecifics. Contrary to these predictions, there were no differences between any of the ecophysiological traits in geckos from the opposing slopes. Nevertheless, our data showed that individuals from the north-facing slope were generally more active in earlier hours of the afternoon compared with south-facing individuals. We suggest that P. guttatus individuals disperse between the slopes and either gene-flow or behavioral plasticity deter local adaptation, resulting in similar physiological traits. Perhaps a stronger contrast in climatic conditions and a stronger barrier are needed to result in interpopulation divergence in temperature-dependent traits.

Fluctuating Asymmetry and Developmental Instability, a Guide to Best Practice

Best practices in studies of developmental instability, as measured by fluctuating asymmetry, have developed over the past 60 years. Unfortunately, they are haphazardly applied in many of the papers submitted for review. Most often, research designs suffer from lack of randomization, inadequate replication, poor attention to size scaling, lack of attention to measurement error, and unrecognized mixtures of additive and multiplicative errors. Here, I summarize a set of best practices, especially in studies that examine the effects of environmental stress on fluctuating asymmetry.

Radial and Bilateral Fluctuating Asymmetry of Iris pumila Flowers as Indicators of Environmental Stress

In this study we compared the biomonitoring potential of various types of flower asymmetry indices in Iris pumila (Dwarf Bearded Iris). We chose 197 naturally growing clones from the arid steppe habitat in the largest sandy area in Europe (Deliblato Sands Nature Reserve), and we transplanted two replicates of each clone to a polluted highway site with a heavy traffic flow. After a period of acclimatization, lower levels of photosynthetic pigment concentrations and higher stomatal density and specific leaf area in transplants verified that the chosen highway site was indeed more stressful and therefore suitable for estimation of the flower asymmetry biomonitoring potential. We analyzed radially and bilaterally symmetrical flower structures (radial fluctuating asymmetry (RA) and bilateral fluctuating asymmetry (FA)) on three perianth parts—falls, standards, and styles—and calculated various asymmetry indices based on linear and geometric morphometrics. Despite utilizing a heavily polluted environment and fairly large sample sizes, only one asymmetry index was significantly higher on the polluted site with demonstrated stressful effects on utilized plants, indicating that flower asymmetry was not an efficient method for biomonitoring in the case of I. pumila RA and FA indices.

Phenotypic plasticity in response to environmental heterogeneity contributes to fluctuating asymmetry in plants: first empirical evidence

Fluctuating asymmetry (FA) is widely used to quantify developmental instability (DI) in ecological and evolutionary studies. It has long been recognized that FA may not exclusively originate from DI for sessile organisms such as plants, because phenotypic plasticity in response to heterogeneities in the environment might also produce FA. This study provides the first empirical evidence for this hypothesis. We reasoned that solar irradiance, which is greater on the southern side than on the northern side of plants growing in the temperate zone of the Northern Hemisphere, would cause systematic morphological differences and asymmetry associated with the orientation of plant parts. We used geometric morphometrics to characterize the size and shape of flower parts in Iris pumila grown in a common garden. The size of floral organs was not significantly affected by orientation. Shape and particularly its asymmetric component differed significantly according to orientation for three different floral parts. Orientation accounted for 10.4% of the total shape asymmetry within flowers in the falls, for 11.4% in the standards and for 2.2% in the style branches. This indicates that phenotypic plasticity in response to a directed environmental factor, most likely solar irradiance, contributes to FA of flowers under natural conditions. That FA partly results from phenotypic plasticity and not just from DI needs to be considered by studies of FA in plants and other sessile organisms.

Fluctuating asymmetry in Robinia pseudoacacia leaves--possible in situ biomarker?

In this study, we analyzed fluctuating asymmetry (FA) of black locust (Robinia pseudoacacia) leaf traits as a measure of developmental instability in polluted and unpolluted habitats. We aimed to evaluate the potential of this method as a biomarker and its applicability on widely distributed species under in situ conditions. Leaf samples were taken from seven sites--three categorized as unpolluted (natural protected and rural) and four categorized as polluted covering the broad spectrum of intense pollution (industrial and traffic), from 1,489 individual trees in total. Results revealed significant differences in FA with expected higher values in polluted environments. Applicability of FA of R. pseudoaccacia leaf traits as a biomarker for testing potential pollution level, as well as the amount and distribution of sampling effort needed for its application, are discussed.

Random phenotypic variation of yeast (Saccharomyces cerevisiae) single-gene knockouts fits a double pareto-lognormal distribution

BACKGROUND

Distributed robustness is thought to influence the buffering of random phenotypic variation through the scale-free topology of gene regulatory, metabolic, and protein-protein interaction networks. If this hypothesis is true, then the phenotypic response to the perturbation of particular nodes in such a network should be proportional to the number of links those nodes make with neighboring nodes. This suggests a probability distribution approximating an inverse power-law of random phenotypic variation. Zero phenotypic variation, however, is impossible, because random molecular and cellular processes are essential to normal development. Consequently, a more realistic distribution should have a y-intercept close to zero in the lower tail, a mode greater than zero, and a long (fat) upper tail. The double Pareto-lognormal (DPLN) distribution is an ideal candidate distribution. It consists of a mixture of a lognormal body and upper and lower power-law tails.

OBJECTIVE AND METHODS

If our assumptions are true, the DPLN distribution should provide a better fit to random phenotypic variation in a large series of single-gene knockout lines than other skewed or symmetrical distributions. We fit a large published data set of single-gene knockout lines in Saccharomyces cerevisiae to seven different probability distributions: DPLN, right Pareto-lognormal (RPLN), left Pareto-lognormal (LPLN), normal, lognormal, exponential, and Pareto. The best model was judged by the Akaike Information Criterion (AIC).

RESULTS

Phenotypic variation among gene knockouts in S. cerevisiae fits a double Pareto-lognormal (DPLN) distribution better than any of the alternative distributions, including the right Pareto-lognormal and lognormal distributions.

CONCLUSIONS AND SIGNIFICANCE

A DPLN distribution is consistent with the hypothesis that developmental stability is mediated, in part, by distributed robustness, the resilience of gene regulatory, metabolic, and protein-protein interaction networks. Alternatively, multiplicative cell growth, and the mixing of lognormal distributions having different variances, may generate a DPLN distribution.

Geometric morphometrics of corolla shape: dissecting components of symmetric and asymmetric variation in Erysimum mediohispanicum (Brassicaceae)

Symmetry is an important feature of floral structure, and floral symmetries are diverse and often complex. We use a new morphometric approach for analysing shapes with complex types of symmetry, which partitions shape variation into a component of symmetric variation and different components of asymmetry. This approach, based on the mathematical theory of symmetry groups, can be used for landmark configurations with any type of symmetry and is therefore promising as a general framework for morphometric analyses of floral symmetry and asymmetry. We demonstrate this approach by quantifying floral shape variation in a wild population of Erysimum mediohispanicum (Brassicaceae). Flowers of this species are disymmetric, so that the symmetry in the left-right and adaxial-abaxial directions can be considered separately and in combination. Both principal component analysis and Procrustes ANOVA indicate that symmetric variation accounts for most of the total variance and that adaxial-abaxial asymmetry is the dominant component of fluctuating asymmetry. Each component is associated with specific patterns of shape variation. These results illustrate the potential of the new method and suggest new areas for future research. The new morphometric approach is promising for further analyses of floral symmetry and asymmetry in evolutionary and developmental contexts.

Growth and asymmetry of soil microfungal colonies from "Evolution Canyon," Lower Nahal Oren, Mount Carmel, Israel

BACKGROUND

Fluctuating asymmetry is a contentious indicator of stress in populations of animals and plants. Nevertheless, it is a measure of developmental noise, typically obtained by measuring asymmetry across an individual organism's left-right axis of symmetry. These individual, signed asymmetries are symmetrically distributed around a mean of zero. Fluctuating asymmetry, however, has rarely been studied in microorganisms, and never in fungi.

OBJECTIVE AND METHODS

We examined colony growth and random phenotypic variation of five soil microfungal species isolated from the opposing slopes of "Evolution Canyon," Mount Carmel, Israel. This canyon provides an opportunity to study diverse taxa inhabiting a single microsite, under different kinds and intensities of abiotic and biotic stress. The south-facing "African" slope of "Evolution Canyon" is xeric, warm, and tropical. It is only 200 m, on average, from the north-facing "European" slope, which is mesic, cool, and temperate. Five fungal species inhabiting both the south-facing "African" slope, and the north-facing "European" slope of the canyon were grown under controlled laboratory conditions, where we measured the fluctuating radial asymmetry and sizes of their colonies.

RESULTS

Different species displayed different amounts of radial asymmetry (and colony size). Moreover, there were highly significant slope by species interactions for size, and marginally significant ones for fluctuating asymmetry. There were no universal differences (i.e., across all species) in radial asymmetry and colony size between strains from "African" and "European" slopes, but colonies of Clonostachys rosea from the "African" slope were more asymmetric than those from the "European" slope.

CONCLUSIONS AND SIGNIFICANCE

Our study suggests that fluctuating radial asymmetry has potential as an indicator of random phenotypic variation and stress in soil microfungi. Interaction of slope and species for both growth rate and asymmetry of microfungi in a common environment is evidence of genetic differences between the "African" and "European" slopes of "Evolution Canyon."

"Evolution Canyon," a potential microscale monitor of global warming across life

Climatic change and stress is a major driving force of evolution. The effects of climate change on living organisms have been shown primarily on regional and global scales. Here I propose the "Evolution Canyon" (EC) microscale model as a potential life monitor of global warming in Israel and the rest of the world. The EC model reveals evolution in action at a microscale involving biodiversity divergence, adaptation, and incipient sympatric speciation across life from viruses and bacteria through fungi, plants, and animals. The EC consists of two abutting slopes separated, on average, by 200 m. The tropical, xeric, savannoid, "African" south-facing slope (AS = SFS) abuts the forested "European" north-facing slope (ES = NFS). The AS receives 200-800% higher solar radiation than the ES. The ES represents the south European forested maquis. The AS and ES exhibit drought and shade stress, respectively. Major adaptations on the AS are because of solar radiation, heat, and drought, whereas those on the ES relate to light stress and photosynthesis. Preliminary evidence suggests the extinction of some European species on the ES and AS. In Drosophila, a 10-fold higher migration was recorded in 2003 from the AS to ES. I advance some predictions that could be followed in diverse species in EC. The EC microclimatic model is optimal to track global warming at a microscale across life from viruses and bacteria to mammals in Israel, and in additional ECs across the planet.

The effect of air pollution and other environmental stressors on leaf fluctuating asymmetry and specific leaf area of Salix alba L

We aimed at evaluating the effect of low-level air pollution on leaf area fluctuating asymmetry (FAA) and specific leaf area (SLA) of Salix alba L., taking into account other environmental factors. Cuttings were grown in standardized conditions in the near vicinity of air quality measuring stations in Belgium. Variability of SLA and FAA between measuring stations explained 83% and 7.26%, respectively, of the total variability. FAA was not influenced by air pollution or environmental factors such as shading, herbivory, air temperature and humidity. SLA was increased by an increase in shadow, while NO(x) and O(3) concentrations had only a marginal influence. The influence of SO(2) concentration was negligible. Although our data analysis suggests a relationship between SLA and NO(x)/O(3) concentration, the absence of a straightforward relationship between FAA and SLA and air pollution still questions the usefulness of these bio-indicators for monitoring air pollution.