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Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding. PLoS One 2020; 15:e0231127. [PMID: 33022692 PMCID: PMC7538199 DOI: 10.1371/journal.pone.0231127] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Accepted: 09/08/2020] [Indexed: 11/19/2022] Open
Abstract
Biodiversity is an important parameter for the evaluation of the extant environmental conditions. Here, we used environmental DNA (eDNA) metabarcoding to investigate fish biodiversity in five different estuaries in Japan. Water samples for eDNA were collected from river mouths and adjacent coastal areas of two estuaries with high degrees of development (the Tama and Miya Rivers) and three estuaries with relatively low degrees of development (the Aka, Takatsu, and Sendai Rivers). A total of 182 fish species across 67 families were detected. Among them, 11 species occurred in all the rivers studied. Rare fishes including endangered species were successfully detected in rich natural rivers. Biodiversity was the highest in the Sendai River and lowest in the Tama River, reflecting the degree of human development along each river. Even though nutrient concentration was low in both the Aka and Sendai Rivers, the latter exhibited greater diversity, including many tropical or subtropical species, owing to its more southern location. Species composition detected by eDNA varied among rivers, reflecting the distribution and migration of fishes. Our results are in accordance with the ecology of each fish species and environmental conditions of each river.
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Garrido S, Ben-Hamadou R, Santos AMP, Ferreira S, Teodósio MA, Cotano U, Irigoien X, Peck MA, Saiz E, Ré P. Born small, die young: Intrinsic, size-selective mortality in marine larval fish. Sci Rep 2015; 5:17065. [PMID: 26597385 PMCID: PMC4657020 DOI: 10.1038/srep17065] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Accepted: 10/22/2015] [Indexed: 11/09/2022] Open
Abstract
Mortality during the early stages is a major cause of the natural variations in the size and recruitment strength of marine fish populations. In this study, the relation between the size-at-hatch and early survival was assessed using laboratory experiments and on field-caught larvae of the European sardine (Sardina pilchardus). Larval size-at-hatch was not related to the egg size but was significantly, positively related to the diameter of the otolith-at-hatch. Otolith diameter-at-hatch was also significantly correlated with survival-at-age in fed and unfed larvae in the laboratory. For sardine larvae collected in the Bay of Biscay during the spring of 2008, otolith radius-at-hatch was also significantly related to viability. Larval mortality has frequently been related to adverse environmental conditions and intrinsic factors affecting feeding ability and vulnerability to predators. Our study offers evidence indicating that a significant portion of fish mortality occurs during the endogenous (yolk) and mixed (yolk /prey) feeding period in the absence of predators, revealing that marine fish with high fecundity, such as small pelagics, can spawn a relatively large amount of eggs resulting in small larvae with no chances to survive. Our findings help to better understand the mass mortalities occurring at early stages of marine fish.
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Affiliation(s)
- S Garrido
- Instituto Português do Mar e da Atmosfera, Av. Brasília s/n, 1449-006 Lisboa, Portugal.,Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
| | - R Ben-Hamadou
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, PO Box 2713, Doha, Qatar
| | - A M P Santos
- Instituto Português do Mar e da Atmosfera, Av. Brasília s/n, 1449-006 Lisboa, Portugal.,Centro de Ciências do Mar do Algarve, Universidade do Algarve. Campus de Gambelas, 8005-139 Faro, Portugal
| | - S Ferreira
- Instituto Português do Mar e da Atmosfera, Av. Brasília s/n, 1449-006 Lisboa, Portugal
| | - M A Teodósio
- Centro de Ciências do Mar do Algarve, Universidade do Algarve. Campus de Gambelas, 8005-139 Faro, Portugal
| | - U Cotano
- Marine Research Unit - AZTI Foundation, Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
| | - X Irigoien
- Red Sea Research Center, King Abdullah University for Science and Technology, 23955-6900 huwal, Saudi Arabia
| | - M A Peck
- Institute for Hydrobiology and Fisheries Science, Hamburg University, Olbersweg 24, 22767 Hamburg, Germany
| | - E Saiz
- Institut de Ciències del Mar - CSIC, Ps. Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain
| | - P Ré
- Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
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Rankin TL, Sponaugle S. Temperature influences selective mortality during the early life stages of a coral reef fish. PLoS One 2011; 6:e16814. [PMID: 21559305 PMCID: PMC3085515 DOI: 10.1371/journal.pone.0016814] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2010] [Accepted: 01/03/2011] [Indexed: 11/23/2022] Open
Abstract
For organisms with complex life cycles, processes occurring at the interface between life stages can disproportionately impact survival and population dynamics. Temperature is an important factor influencing growth in poikilotherms, and growth-related processes are frequently correlated with survival. We examined the influence of water temperature on growth-related early life history traits (ELHTs) and differential mortality during the transition from larval to early juvenile stage in sixteen monthly cohorts of bicolor damselfish Stegastes partitus, sampled on reefs of the upper Florida Keys, USA over 6 years. Otolith analysis of settlers and juveniles coupled with environmental data revealed that mean near-reef water temperature explained a significant proportion of variation in pelagic larval duration (PLD), early larval growth, size-at-settlement, and growth during early juvenile life. Among all cohorts, surviving juveniles were consistently larger at settlement, but grew more slowly during the first 6 d post-settlement. For the other ELHTs, selective mortality varied seasonally: during winter and spring months, survivors exhibited faster larval growth and shorter PLDs, whereas during warmer summer months, selection on PLD reversed and selection on larval growth became non-linear. Our results demonstrate that temperature not only shapes growth-related traits, but can also influence the direction and intensity of selective mortality.
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Affiliation(s)
- Tauna L. Rankin
- Marine Biology and Fisheries, Rosenstiel School of Marine and Atmospheric Science (RSMAS)/University of Miami, Miami, Florida, United States of America
| | - Su Sponaugle
- Marine Biology and Fisheries, Rosenstiel School of Marine and Atmospheric Science (RSMAS)/University of Miami, Miami, Florida, United States of America
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Johnson DW, Christie MR, Moye J. QUANTIFYING EVOLUTIONARY POTENTIAL OF MARINE FISH LARVAE: HERITABILITY, SELECTION, AND EVOLUTIONARY CONSTRAINTS. Evolution 2010; 64:2614-28. [DOI: 10.1111/j.1558-5646.2010.01027.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Grorud-Colvert K, Sponaugle S. Variability in water temperature affects trait-mediated survival of a newly settled coral reef fish. Oecologia 2010; 165:675-86. [DOI: 10.1007/s00442-010-1748-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2009] [Accepted: 07/28/2010] [Indexed: 10/19/2022]
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