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Hasan NA, Grim CJ, Haley BJ, Chun J, Alam M, Taviani E, Hoq M, Munk AC, Saunders E, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Xie G, Nair GB, Huq A, Colwell RR. Comparative genomics of clinical and environmental Vibrio mimicus. Proc Natl Acad Sci U S A 2010; 107:21134-9. [PMID: 21078967 PMCID: PMC3000290 DOI: 10.1073/pnas.1013825107] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Whether Vibrio mimicus is a variant of Vibrio cholerae or a separate species has been the subject of taxonomic controversy. A genomic analysis was undertaken to resolve the issue. The genomes of V. mimicus MB451, a clinical isolate, and VM223, an environmental isolate, comprise ca. 4,347,971 and 4,313,453 bp and encode 3,802 and 3,290 ORFs, respectively. As in other vibrios, chromosome I (C-I) predominantly contains genes necessary for growth and viability, whereas chromosome II (C-II) bears genes for adaptation to environmental change. C-I harbors many virulence genes, including some not previously reported in V. mimicus, such as mannose-sensitive hemagglutinin (MSHA), and enterotoxigenic hemolysin (HlyA); C-II encodes a variant of Vibrio pathogenicity island 2 (VPI-2), and Vibrio seventh pandemic island II (VSP-II) cluster of genes. Extensive genomic rearrangement in C-II indicates it is a hot spot for evolution and genesis of speciation for the genus Vibrio. The number of virulence regions discovered in this study (VSP-II, MSHA, HlyA, type IV pilin, PilE, and integron integrase, IntI4) with no notable difference in potential virulence genes between clinical and environmental strains suggests these genes also may play a role in the environment and that pathogenic strains may arise in the environment. Significant genome synteny with prototypic pre-seventh pandemic strains of V. cholerae was observed, and the results of phylogenetic analysis support the hypothesis that, in the course of evolution, V. mimicus and V. cholerae diverged from a common ancestor with a prototypic sixth pandemic genomic backbone.
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Affiliation(s)
| | - Christopher J. Grim
- Maryland Pathogen Research Institute and
- University of Maryland Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742
| | | | - Jongsik Chun
- School of Biological Sciences and
- Institute of Microbiology, Seoul National University, Seoul 151-742, Republic of Korea
| | - Munirul Alam
- International Vaccine Institute, Seoul, 151-818, Republic of Korea;International Center for Diarrhoeal Disease Research, Bangladesh, Dhaka-1000, Bangladesh
| | | | - Mozammel Hoq
- Department of Microbiology, University of Dhaka, Dhaka-1000, Bangladesh
| | - A. Christine Munk
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - Elizabeth Saunders
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - Thomas S. Brettin
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - David C. Bruce
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - Jean F. Challacombe
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - J. Chris Detter
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - Cliff S. Han
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - Gary Xie
- Genome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545; and
| | - G. Balakrish Nair
- National Institute of Cholera and Enteric Diseases, Kolkata 700 010, India
| | - Anwar Huq
- Maryland Pathogen Research Institute and
| | - Rita R. Colwell
- Maryland Pathogen Research Institute and
- University of Maryland Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742
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Chang HS, Sack DA. Development of a novel in vitro assay (ALS assay) for evaluation of vaccine-induced antibody secretion from circulating mucosal lymphocytes. CLINICAL AND DIAGNOSTIC LABORATORY IMMUNOLOGY 2001; 8:482-8. [PMID: 11329444 PMCID: PMC96087 DOI: 10.1128/cdli.8.3.482-488.2001] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
We describe here a novel method for measuring in vitro antibody secretion from the tissue culture of human B lymphocytes in peripheral blood mononuclear cells (PBMC) after oral vaccination with a killed cholera vaccine. Enzyme-linked immunosorbent assay (ELISA) titers of the antibody secreted in the cell supernatant were determined. The validation results demonstrated that human PBMC remained viable and continued to secrete antibodies (total immunoglobulin A [IgA] and IgG) for up to 4 days of incubation at 37 degrees C with 5% CO(2) in cell cultures. The secreted antibody concentration correlated positively with the PBMC concentration and incubation time in the tissue culture and correlated negatively with the storage time of the whole blood at room temperature. In vitro assay of secreting antibody in the lymphocyte supernatant (i.e., the ALS assay) is capable of the detecting specific antibody response after oral vaccination with a killed whole-cell-plus-B-subunit cholera vaccine (WC-B) in healthy adults in a phase I clinical trial. Postimmunization PBMC secreted antibodies to cholera toxin in the cell supernatants. Antibody production did not require any in vitro antigen stimulation. In the ALS assay, antigen-specific antibody titers of prevaccination samples were barely detectable, whereas serum antitoxin ELISA titers in background of prevaccine samples were significantly higher than the ALS titers. We conclude that, without any in vitro antigen stimulation after vaccination, PBMC secrete antibodies into the supernatants in the ALS assay. This assay can quantitatively measure the antigen-specific antibody production from the PBMC culture in postvaccination blood samples.
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Affiliation(s)
- H S Chang
- Vaccine Testing Unit, Department of International Health, Johns Hopkins University School of Hygiene and Public Health, Baltimore, Maryland 21205, USA.
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Chakraborty S, Nair GB, Shinoda S. Pathogenic vibrios in the natural aquatic environment. REVIEWS ON ENVIRONMENTAL HEALTH 1997; 12:63-80. [PMID: 9273923 DOI: 10.1515/reveh.1997.12.2.63] [Citation(s) in RCA: 75] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
In recent years, members belonging to the genus Vibrio of the family Vibrionaceae have acquired increasing importance because of the association of several of its members with human disease. The most feared of the Vibrio species is Vibrio cholerae, the causative agent of cholera, a devastating disease of global significance. Other important vibrios of medical importance are V. parahemolyticus, V. vulnificus, V. mimicus, and to a lesser extent V. fluvialis, V. furnissii, V. hollisae, and V. damsela. Recent studies have also implicated V. alginolyticus and V. metschnikovii in human disease, although their complete significance has not yet been established. The virulence of all medically important vibrios is aided by a variety of traits that help breach human defenses. In this review, we provide an overview of the environmental distribution of the pathogenic vibrios and the important virulence traits that enable them to cause disease.
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Affiliation(s)
- S Chakraborty
- National Institute of Cholera & Enteric Diseases, Calcutta, India
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Rahman MM, Miyoshi S, Tomochika K, Wakae H, Shinoda S. Analysis of the structural gene encoding a hemolysin in Vibrio mimicus. Microbiol Immunol 1997; 41:169-73. [PMID: 9087960 DOI: 10.1111/j.1348-0421.1997.tb01183.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
An environmental isolate of V. mimicus, strain E-33, has been reported to produce and secrete a hemolysin of 63 kDa. The hemolysin is enterotoxic in test animals. The nucleotide sequence of the structural gene of the hemolysin was determined. We found a 2,232 bp open reading frame, which codes a peptide of 744 amino acids, with a calculated molecular weight of 83,903 Da. The sequence for the structural gene was closely related to the V. cholerae el tor hlyA gene, coding an exocellular hemolysin. The amino terminal amino-acid sequence of the 63 kDa hemolysin, purified from V. mimicus, was determined by the Edman degradation method and found to be NH2-S-V-S-A-N-N-V-T-N-N-N-E-T. This sequence is identified from S-152 to T-164 predicted from the nucleotide sequence. So, it seems that the mature hemolysin in V. mimicus is processed upon deleting the first 151 amino acids, and the molecular mass is 65,972 Da. Analyzing the deduced amino-acid sequence, we also found a potential signal sequence of 24 amino acids at the amino terminal. Our results suggest that, like V. cholerae hemolysin, two-step processing also exists in V. Mimicus hemolysin.
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Affiliation(s)
- M M Rahman
- Faculty of Pharmaceutical Sciences, Okayama University, Japan
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Alam M, Miyoshi SI, Tomochika KI, Shinoda S. Purification and characterization of novel hemagglutinins from Vibrio mimicus: a 39-kilodalton major outer membrane protein and lipopolysaccharide. Infect Immun 1996; 64:4035-41. [PMID: 8926065 PMCID: PMC174333 DOI: 10.1128/iai.64.10.4035-4041.1996] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Two hemagglutinins (HAs) mediating the agglutinability to rabbit erythrocytes were isolated from 32-h culture supernatant of enterotoxigenic strain E-33 of Vibrio mimicus by ultrafiltration followed by gel filtration and anion-exchange column chromatography. The HAs were designated R-HA and C-HA on the basis of specific hemagglutinating activity towards rabbit erythrocytes only (R-HA) and towards chicken and rabbit erythrocytes (C-HA). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and subsequent staining with Coomassie brilliant blue revealed no detectable protein band and a single band of Mr 39,000 in the case of R-HA and C-HA, respectively. However, silver staining of the gel containing R-HA revealed the appearance of low-molecular-weight material. These two HAs differed from each other and from previously reported HA/protease in receptor specificity, molecular composition, and biochemical and immunochemical properties. No simple sugar other than glycoproteins, including mucin, inhibited hemagglutinating activities of both C-HA and R-HA. Rabbit antibody against R-HA or C-HA could agglutinate E-33 whole cells, implying a possible cell surface origin of the two HAs. The isolated E-33 lipopolysaccharide (LPS) or its polysaccharide moiety conferred biochemical and immunochemical properties identical to those of R-HA, confirming that the R-HA represents polysaccharide of LPS. The LPS preparations from heterologous strains of Vibrio mimicus and Vibrio cholerae non-O1 confirmed that the hemagglutinating ability is a common function of LPS. On the other hand, the antibody against C-HA specifically recognized a major outer membrane protein (OMP) with an Mr of around 39,000 in both homologous and heterologous strains of V. mimicus, suggesting an OMP origin of C-HA. Furthermore, the antibody recognized a major OMP with an Mr of around 37,000 in V. cholerae. Although the immunogenicity of LPS and OMP is well documented for important intestinal pathogens, the hemagglutinating properties of such attractive cell surface components are hitherto unrecognized and will definitely contribute towards understanding their role in bacterial adherence.
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Affiliation(s)
- M Alam
- Faculty of Pharmaceutical Sciences, Okayama University, Japan
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Alam M, Miyoshi S, Yamamoto S, Tomochika K, Shinoda S. Expression of virulence-related properties by, and intestinal adhesiveness of, Vibrio mimicus strains isolated from aquatic environments. Appl Environ Microbiol 1996; 62:3871-4. [PMID: 8837444 PMCID: PMC168197 DOI: 10.1128/aem.62.10.3871-3874.1996] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
A study of the major pathogenic characteristics of Vibrio mimicus was carried out with 77 strains isolated from aquatic environments in Okayama, Japan. Of the strains tested, 96% demonstrated in vitro adherence to the rabbit intestinal mucosa, of which 36, 20, and 43% belonged to the strongly, moderately, and weakly adhesive groups, respectively. Of the 27 strains which appeared to be enterotoxigenic in the experiments using rabbit ileal loops, 74% belonged to the strongly adhesive group. All strains of V. mimicus at early log phase showed cell-mediated hemagglutination, and 70% of strongly hemagglutinative strains belonged to the strongly adhesive group, implying a possible correlation between cell-mediated hemagglutination and bacterial adherence. However, no significant correlation could be detected in the production of putative exocellular pathogenic factors and bacterial adherence or enterotoxigenicity.
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Affiliation(s)
- M Alam
- Faculty of Pharmaceutical Sciences, Okayama University, Japan
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Alam M, Miyoshi S, Shinoda S. Production of antigenically related exocellular elastolytic proteases mediating hemagglutination by vibrios. Microbiol Immunol 1995; 39:67-70. [PMID: 7783680 DOI: 10.1111/j.1348-0421.1995.tb02170.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Exocellular proteases produced by Vibrio fluvialis, V. furnissii, V. metschnikovii and V. campbellii were characterized and compared to those of V. mimicus protease (VMP) and V. vulnificus protease (VVP). These proteases possessed both elastolytic and hemagglutinating abilities and were identified, except that of V. metschnikovii, as metalloprotease. Conversely, V. metschnikovii protease failed to exhibit some of the salient features for metalloproteases suggesting the existence of protease(s) other than metalloprotease. However, antibodies against VVP cross-reacted to these proteases and to VMP indicating antigenic relatedness amongst vibrio proteases. This study, thus, demonstrated the prevalent distributions of antigenically related proteases both in pathogenic and non-pathogenic vibrios, bringing their status as a virulence determinant into question.
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Affiliation(s)
- M Alam
- Faculty of Pharmaceutical Sciences, Okayama University, Japan
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