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Xu S, Thompson W, Kerr J, Godbole S, Sears DD, Patterson R, Natarajan L. Modeling interrelationships between health behaviors in overweight breast cancer survivors: Applying Bayesian networks. PLoS One 2018; 13:e0202923. [PMID: 30180192 PMCID: PMC6122792 DOI: 10.1371/journal.pone.0202923] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Accepted: 08/07/2018] [Indexed: 02/04/2023] Open
Abstract
Obesity and its impact on health is a multifaceted phenomenon encompassing many factors, including demographics, environment, lifestyle, and psychosocial functioning. A systems science approach, investigating these many influences, is needed to capture the complexity and multidimensionality of obesity prevention to improve health. Leveraging baseline data from a unique clinical cohort comprising 333 postmenopausal overweight or obese breast cancer survivors participating in a weight-loss trial, we applied Bayesian networks, a machine learning approach, to infer interrelationships between lifestyle factors (e.g., sleep, physical activity), body mass index (BMI), and health outcomes (biomarkers and self-reported quality of life metrics). We used bootstrap resampling to assess network stability and accuracy, and Bayesian information criteria (BIC) to compare networks. Our results identified important behavioral subnetworks. BMI was the primary pathway linking behavioral factors to glucose regulation and inflammatory markers; the BMI-biomarker link was reproduced in 100% of resampled networks. Sleep quality was a hub impacting mental quality of life and physical health with > 95% resampling reproducibility. Omission of the BMI or sleep links significantly degraded the fit of the networks. Our findings suggest potential mechanistic pathways and useful intervention targets for future trials. Using our models, we can make quantitative predictions about health impacts that would result from targeted, weight loss and/or sleep improvement interventions. Importantly, this work highlights the utility of Bayesian networks in health behaviors research.
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Affiliation(s)
- Selene Xu
- Department of Mathematics, University of California, San Diego, San Diego, California, United States of America
| | - Wesley Thompson
- Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, United States of America
| | - Jacqueline Kerr
- Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, United States of America
| | - Suneeta Godbole
- Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, United States of America
| | - Dorothy D. Sears
- Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, United States of America
- Department of Medicine, University of California, San Diego, San Diego, California, United States of America
| | - Ruth Patterson
- Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, United States of America
| | - Loki Natarajan
- Department of Family Medicine and Public Health, University of California, San Diego, San Diego, California, United States of America
- * E-mail:
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Money ES, Barton LE, Dawson J, Reckhow KH, Wiesner MR. Validation and sensitivity of the FINE Bayesian network for forecasting aquatic exposure to nano-silver. THE SCIENCE OF THE TOTAL ENVIRONMENT 2014; 473-474:685-91. [PMID: 24412914 DOI: 10.1016/j.scitotenv.2013.12.100] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Revised: 12/21/2013] [Accepted: 12/22/2013] [Indexed: 05/23/2023]
Abstract
The adaptive nature of the Forecasting the Impacts of Nanomaterials in the Environment (FINE) Bayesian network is explored. We create an updated FINE model (FINEAgNP-2) for predicting aquatic exposure concentrations of silver nanoparticles (AgNP) by combining the expert-based parameters from the baseline model established in previous work with literature data related to particle behavior, exposure, and nano-ecotoxicology via parameter learning. We validate the AgNP forecast from the updated model using mesocosm-scale field data and determine the sensitivity of several key variables to changes in environmental conditions, particle characteristics, and particle fate. Results show that the prediction accuracy of the FINEAgNP-2 model increased approximately 70% over the baseline model, with an error rate of only 20%, suggesting that FINE is a reliable tool to predict aquatic concentrations of nano-silver. Sensitivity analysis suggests that fractal dimension, particle diameter, conductivity, time, and particle fate have the most influence on aquatic exposure given the current knowledge; however, numerous knowledge gaps can be identified to suggest further research efforts that will reduce the uncertainty in subsequent exposure and risk forecasts.
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Affiliation(s)
- Eric S Money
- Center for the Environmental Implications of NanoTechnology (CEINT), Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA; Dept. of Civil and Environmental Engineering, Pratt School of Engineering, Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA.
| | - Lauren E Barton
- Center for the Environmental Implications of NanoTechnology (CEINT), Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA; Dept. of Civil and Environmental Engineering, Pratt School of Engineering, Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA
| | - Joseph Dawson
- Dept. of Biology, Oberlin College, 119 Woodland St., Oberlin, OH 44074, USA
| | - Kenneth H Reckhow
- Center for the Environmental Implications of NanoTechnology (CEINT), Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA; Nicholas School of the Environment, Duke University, P.O. Box 90328, Durham, NC 27708, USA
| | - Mark R Wiesner
- Center for the Environmental Implications of NanoTechnology (CEINT), Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA; Dept. of Civil and Environmental Engineering, Pratt School of Engineering, Duke University, P.O. Box 90287, Durham, NC 27708-0827, USA
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Value of dual-energy X-ray absorptiometry derived parameters vs anthropometric obesity indices in the assessment of early atherosclerosis in abdominally obese men. Obes Res Clin Pract 2012; 6:e263-346. [DOI: 10.1016/j.orcp.2011.08.155] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/07/2011] [Revised: 07/27/2011] [Accepted: 08/23/2011] [Indexed: 12/24/2022]
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