1
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Development of a diagnostic single nucleotide polymorphism (SNP) panel for identifying geographic origins of Cochliomyia hominivorax, the New World screwworm. Vet Parasitol 2023; 315:109884. [PMID: 36701943 DOI: 10.1016/j.vetpar.2023.109884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 12/21/2022] [Accepted: 01/16/2023] [Indexed: 01/20/2023]
Abstract
The New World screwworm, Cochliomyia hominivorax, causes myiasis in livestock, humans, and other warm-blooded animals in much of South America and the Caribbean. It has been eradicated from North and Central America using the sterile insect technique and a biological barrier is currently maintained at the Panama - Colombian border. However, C. hominivorax is still a threat to eradicated areas as outbreaks can and do occur. In order to identify the origin of a fly involved in an outbreak scenario, diagnostic tools would be beneficial. Recently, the geographic population structure of this species was identified using single nucleotide polymorphisms (SNPs). Here we characterize the three major regional clusters: South America, the Inner Caribbean, and the Outer Caribbean. The objective of this study was to develop a SNP (single nucleotide polymorphism) panel to distinguish between these three clusters. A panel was developed using two unique SNPs per region for a total of six SNPs. This diagnostic SNP assay will allow for rapid source determination of flies from future incursions in order to intercept introductory pathways and aid in the control of New World screwworm.
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2
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Insights into the genetic landscape and presence of Cochliomyia hominivorax in the Caribbean. Parasitol Res 2023; 122:547-556. [PMID: 36527510 DOI: 10.1007/s00436-022-07757-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 12/06/2022] [Indexed: 12/23/2022]
Abstract
The New World screwworm, Cochliomyia hominivorax, is a major parasite that causes myiasis in livestock, humans, and other warm-blooded animals in the western hemisphere. There is a permanent biological border that is maintained between Panama and Colombia, as it has been eradicated from North and Central America. However, it still exists in much of the Caribbean and South America causing an estimated annual loss of $3.6 billion dollars in South America alone. Less information is available for C. hominivorax in the Caribbean. Thus, here we examined its presence and genetic landscape in order to gain insights into this fly's distribution in this region. First, through sampling efforts, novel GPS (Global Positioning System) coordinates were collected. Second, the environmental correlates of those presence points were examined. Next, samples were sequenced in order to obtain a pairwise ΦIT genetic distance matrix. And lastly, this matrix was used to create a genetic landscape of divergence. The results of the genetic landscape show flies as more diverse in Trinidad and Tobago and less diverse in the Dominican Republic. This is perhaps due to the proximity of Trinidad to Venezuela and gene flow may be occurring between these two areas. This information will aid in screwworm surveillance and control programs by providing environmental correlates and a view into the distribution of these flies.
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3
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Tietjen M, Pérez de León AA, Sagel A, Skoda SR, Phillips PL, Mitchell RD, Caruth J, Durán U, Musai L, Tortosa S, Arp AP. Geographic Population Genetic Structure of the New World Screwworm, Cochliomyia hominivorax (Diptera: Calliphoridae), Using SNPs. JOURNAL OF MEDICAL ENTOMOLOGY 2022; 59:874-882. [PMID: 35323976 DOI: 10.1093/jme/tjac024] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Indexed: 06/14/2023]
Abstract
The New World screwworm, Cochliomyia hominivorax (Coquerel 1858) (Diptera: Calliphoridae), is a serious parasite of livestock, humans, and other warm-blooded animals. It has been eradicated from the northern parts of its historical range down to the Panama-Colombian border where a permanent barrier zone is maintained. This eradication was accomplished through using the sterile insect technique (SIT). In 2016 there was an outbreak of C. hominivorax in the Florida Keys. In only six months, this pest was successfully re-eradicated using SIT, but the geographic origin of the invasion has yet to be resolved. It was previously determined that the Florida flies most likely represented a single invasion, and it was recommended that a finer-scale genetic assessment should be completed. Thus, this current proof-of-concept study aimed to develop a population genetic database using single nucleotide polymorphisms (SNPs) to reference outbreaks and potentially identify the origin of the Florida outbreak. This initial database consists of wild-caught samples from 4 geographic locations as well as laboratory colony samples that originated from 7 additional locations using a genotyping by sequencing (GBS) approach. Geographic population structuring was identified for twelve populations that clustered according to geographic location. The Florida outbreak samples appeared similar to samples from the outer Caribbean cluster which included samples from Dominican Republic and Trinidad and Tobago, however, these results will be further clarified with the replacement of laboratory colony samples with future wild-caught samples.
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Affiliation(s)
- Mackenzie Tietjen
- United States Department of Agriculture, Agricultural Research Service, Knipling-Bushland U.S. Livestock Insects Research Laboratory, 2700 Fredericksburg Road, Kerrville, TX, 78028, USA
| | - Adalberto A Pérez de León
- United States Department of Agriculture, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center: Parlier, CA, 93648, USA
| | - Agustin Sagel
- United States Department of Agriculture, Agricultural Research Service, Screwworm Research Unit, Pacora, Panama
| | - Steve R Skoda
- United States Department of Agriculture, Agricultural Research Service, Knipling-Bushland U.S. Livestock Insects Research Laboratory, 2700 Fredericksburg Road, Kerrville, TX, 78028, USA
| | - Pamela L Phillips
- United States Department of Agriculture, Animal and Plant Health Inspection Service, International Services, International Services, Pacora, Panama
| | - Robert D Mitchell
- U.S. Environmental Protection Agency, Office of Pesticide Programs, Washington, DC, 20460, USA
| | - Joanne Caruth
- Animal Health Unit, Division of Food Production Forestry and Fisheries, Tobago House of Assembly. Hope Farm, Trinidad and Tobago
| | - Uziel Durán
- Direccion General de Ganaderia (DIGEGA), Ministry of Agriculture of the Dominican Republic, Santo Domingo, Dominican Republic
| | - Lisa Musai
- Animal Production and Health Division, Ministry of Agriculture, Land and Fisheries, Port of Spain, Trinidad and Tobago
| | - Silvia Tortosa
- Direccion General de Ganaderia (DIGEGA), Ministry of Agriculture of the Dominican Republic, Santo Domingo, Dominican Republic
| | - Alex P Arp
- United States Department of Agriculture, Agricultural Research Service, Screwworm Research Unit, Pacora, Panama
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Bergamo LW, Silva-Brandão KL, Vicentini R, Fresia P, Azeredo-Espin AML. Genetic Differentiation of a New World Screwworm Fly Population from Uruguay Detected by SNPs, Mitochondrial DNA and Microsatellites in Two Consecutive Years. INSECTS 2020; 11:E539. [PMID: 32824385 PMCID: PMC7469150 DOI: 10.3390/insects11080539] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Revised: 08/02/2020] [Accepted: 08/09/2020] [Indexed: 06/11/2023]
Abstract
The New World screwworm (NWS) fly, Cochliomyia hominivorax (Diptera: Calliphoridae), is an economically important ectoparasite currently distributed in South America and in the Caribbean basin. The successful eradication of this species in USA, Mexico and continental Central America was achieved by a control program based on the sterile insect technique (SIT). In order to implement a genetic control strategy over the NWS fly's current area of occurrence, first, it is necessary to understand the species dynamics and population structure. In order to address this objective, the spatial genetic structure of the NWS fly was previously reported in South America based on different genetic markers; however, to date, no study has investigated temporal changes in the genetic composition of its populations. In the current study, the temporal genetic structure of a NWS fly population from Uruguay was investigated through two consecutive samplings from the same locality over an interval of approximately 18 generations. The genetic structure was accessed with neutral and under selection SNPs obtained with genotyping-by-sequencing. The results gathered with these data were compared to estimates achieved with mitochondrial DNA sequences and eight microsatellite markers. Temporal changes in the genetic composition were revealed by all three molecular markers, which may be attributed to seasonal changes in the NWS fly's southern distribution. SNPs were employed for the first time for estimating the genetic structure in a NWS fly population; these results provide new clues and perspectives on its population genetic structure. This approach could have significant implications for the planning and implementation of management programs.
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Affiliation(s)
- Luana Walravens Bergamo
- Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas SP 13083-970, Brazil;
- Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Estadual de Campinas (UNICAMP), Campinas SP 13083-862, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas (CBMEG-UNICAMP), Campinas SP 13083-875, Brazil;
| | - Karina Lucas Silva-Brandão
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas (CBMEG-UNICAMP), Campinas SP 13083-875, Brazil;
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (CCNH-UFABC), Santo André SP 09210-580, Brazil
| | - Renato Vicentini
- Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas SP 13083-970, Brazil;
| | - Pablo Fresia
- Unidad Mixta Pasteur + INIA (UMPI), Institut Pasteur de Montevideo, Montevideo 11400, Uruguay
| | - Ana Maria Lima Azeredo-Espin
- Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas SP 13083-970, Brazil;
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas (CBMEG-UNICAMP), Campinas SP 13083-875, Brazil;
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5
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Costa-Júnior LM, Chaves DP, Brito DRB, Santos VAFD, Costa-Júnior HN, Barros ATM. A review on the occurrence of Cochliomyia hominivorax (Diptera: Calliphoridae) in Brazil. ACTA ACUST UNITED AC 2020; 28:548-562. [PMID: 31483031 DOI: 10.1590/s1984-29612019059] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 07/03/2019] [Indexed: 11/22/2022]
Abstract
Cochliomyia hominivorax (Coquerel, 1858), the New World screwworm, causes primary myiasis in wild and domestic animals in tropical and subtropical regions of Brazil. Although this species is considered to occur throughout the country, organized information about its recorded distribution has not been available until now. This article aimed to provide a comprehensive review of the historical and current data published on both immature (myiasis) and adult stages of C. hominivorax in Brazil. A total of 174 articles were found; of these, 141 articles reported myiasis cases in cattle (146 records), humans (68 records), and other mammalian hosts (40 records), and captures of adult flies were reported in 33 articles. C. hominivorax is widespread in Brazil, having been recorded in 208 municipalities in all major biomes of the country.
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Affiliation(s)
- Livio Martins Costa-Júnior
- Laboratório de Controle de Parasitos, Centro de Ciências Biológicas e da Saúde, Universidade Federal do Maranhão - UFMA, São Luís, MA, Brasil
| | - Daniel Praseres Chaves
- Departamento de Patologia, Centro de Ciências Agrárias, Universidade Federal do Maranhão - UFMA, São Luís, MA, Brasil
| | | | - Vitor Augusto Ferreira Dos Santos
- Laboratório de Controle de Parasitos, Centro de Ciências Biológicas e da Saúde, Universidade Federal do Maranhão - UFMA, São Luís, MA, Brasil
| | - Henrique Nelson Costa-Júnior
- Laboratório de Controle de Parasitos, Centro de Ciências Biológicas e da Saúde, Universidade Federal do Maranhão - UFMA, São Luís, MA, Brasil
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Gonçalves RM, Mastrangelo T, Rodrigues JCV, Paulo DF, Omoto C, Corrêa AS, de Azeredo‐Espin AML. Invasion origin, rapid population expansion, and the lack of genetic structure of cotton bollworm ( Helicoverpa armigera) in the Americas. Ecol Evol 2019; 9:7378-7401. [PMID: 31346410 PMCID: PMC6635935 DOI: 10.1002/ece3.5123] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 03/06/2019] [Accepted: 03/08/2019] [Indexed: 12/20/2022] Open
Abstract
In 2013, Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae) was officially declared as present in Brazil and, after two years, the species was detected in the Caribbean and North America. Information on genetic features and accurate distribution of pests is the basis for agricultural protection policies. Furthermore, such knowledge is imperative to develop control strategies, understand the geographical range, and genetic patterns of this species in the Americas. Here, we carried out the widest sampling of H. armigera in the South American continent and Puerto Rico, after we estimated the diversity, demographic parameters, and genetic structure. The Internal Transcribed Spacer 1 (ITS1) nuclear marker was used to investigate the presence of putative hybrids between H. armigera and H. zea, and they were observed at a frequency of 1.5%. An ABC analysis, based in COI gene fragment, suggested Europe as the origin of South America specimens of H. armigeraand following a movement northward through the Caribbean. Three mtDNA genes and three nDNA markers revealed high genetic diversity distributed without the defined population structure of H. armigera in South America. Most of the genetic variation is within populations with a multidirectional expansion of H. armigera among morphoclimatic regions. High genetic diversity, rapid population expansion, and hybridization have implications for pest management since they suggest that adaptive alleles are spread through wide areas in South America that favor rapid local adaptation of H. armigera to new and disturbed environments (e.g., in agricultural areas).
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Affiliation(s)
- Rogério Martins Gonçalves
- Department of Genetics, Evolution and Bioagents, Institute of BiologyState University of Campinas (UNICAMP)CampinasBrazil
- Graduate Program in Genetics and Molecular Biology, Institute of BiologyState University of Campinas (UNICAMP)CampinasBrazil
| | - Thiago Mastrangelo
- Centre for Nuclear Energy in AgricultureUniversity of São Paulo (USP)PiracicabaBrazil
| | | | - Daniel Fernando Paulo
- Department of Genetics, Evolution and Bioagents, Institute of BiologyState University of Campinas (UNICAMP)CampinasBrazil
- Graduate Program in Genetics and Molecular Biology, Institute of BiologyState University of Campinas (UNICAMP)CampinasBrazil
| | - Celso Omoto
- Department of Entomology and AcarologyLuiz de Queiroz College of Agriculture, University of São Paulo (USP/ESALQ)PiracicabaBrazil
| | - Alberto Soares Corrêa
- Department of Entomology and AcarologyLuiz de Queiroz College of Agriculture, University of São Paulo (USP/ESALQ)PiracicabaBrazil
| | - Ana Maria Lima de Azeredo‐Espin
- Department of Genetics, Evolution and Bioagents, Institute of BiologyState University of Campinas (UNICAMP)CampinasBrazil
- Graduate Program in Genetics and Molecular Biology, Institute of BiologyState University of Campinas (UNICAMP)CampinasBrazil
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7
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Mulieri PR, Patitucci LD. Using ecological niche models to describe the geographical distribution of the myiasis-causing Cochliomyia hominivorax (Diptera: Calliphoridae) in southern South America. Parasitol Res 2019; 118:1077-1086. [PMID: 30783861 DOI: 10.1007/s00436-019-06267-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Accepted: 02/12/2019] [Indexed: 10/27/2022]
Abstract
In southern South America, namely Argentina and Chile, Cochliomyia hominivorax (Coquerel) is the main myiasic agent on humans and domestic animals. The distribution pattern of the species is poorly known and the southern limit of its geographic distribution is unclear. The aims of this study are to elucidate the basic environmental factors associated with occurrence of this myiasic species, evaluation of models constructed on the basis of occurrence data based on adult specimen records to predict geographic occurrence of myiasis, evaluation of unsurveyed sites of high potential of occurrence of the species, and recognition and prioritization of areas that need medical control and specific prophylaxis practices related to this pest. The maximum entropy modeling system (Maxent) was used. Maps of potential distribution of C. hominivorax were produced using two different datasets, models obtained with all localities known for the species (combining medical data and taxonomic data) and only-taxonomic models (excluding medical data). The results obtained include an updated compilation of occurrence of the species in Argentina and Chile. Predictive models obtained in this work indicated that large areas of central-eastern territory of Argentina has the potential for C. hominivorax occurrence, probably reaching the parallel 42° S as is indicated by the complete datasets. Only-taxonomic models fail to predict those myiasic cases occurring in the nearer areas of the Andean chains. The main variables associated with the distribution of C. hominivorax were, alternatively, isothermality or minimum temperature of the coldest month. These results provide a new analytical resource of high potential for the prevention of myiasis and to supports further epidemiological studies.
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Affiliation(s)
- Pablo Ricardo Mulieri
- Museo Argentino de Ciencias Naturales "Bernardino Rivadavia", Consejo Nacional de Investigaciones Científicas y Técnicas, Av. Angel Gallardo 470, C1405DJR, Buenos Aires, Argentina.
| | - Luciano Damián Patitucci
- Museo Argentino de Ciencias Naturales "Bernardino Rivadavia", Consejo Nacional de Investigaciones Científicas y Técnicas, Av. Angel Gallardo 470, C1405DJR, Buenos Aires, Argentina
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8
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Bergamo LW, Fresia P, Lyra ML, Azeredo-Espin AML. High Genetic Diversity and No Population Structure of the New World Screwworm Fly Cochliomyia hominivorax (Diptera: Calliphoridae) on a Microgeographic Scale: Implications for Management Units. JOURNAL OF ECONOMIC ENTOMOLOGY 2018; 111:2476-2482. [PMID: 30256994 DOI: 10.1093/jee/toy171] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Indexed: 06/08/2023]
Abstract
The New World screwworm fly Cochliomyia hominivorax (Coquerel, 1858) (Diptera: Calliphoridae) is an important livestock pest endemic to the Americas that has been eradicated from North and continental Central America with a control program based on the Sterile Insect Technique (SIT). The establishment of target management units is a strategic step in the implementation of new control programs, which can be achieved using genetic studies of natural populations. Previous studies of New World screwworm fly populations were conducted on the continental scale and identified four main groups: two in South America and two in the Caribbean. However, studies within these groups are needed to determine which smaller geographic areas can be treated as management units. Here, we analyze the genetic variability distribution and the population demographic signals of the New World screwworm fly in a 6,000 km2 area located along the border of Brazil and Uruguay. This area was the subject of the first control pilot program conducted in South America. We studied eight microsatellite loci and sequences from two mitochondrial DNA regions in individuals sampled at 20-25 livestock breeding farms. We observed no population structure and found high genetic variability on the geographical scale sampled for both molecular markers. Our microsatellite data suggest that these populations are not in equilibrium, and demographic analyses based on mitochondrial data indicate population expansion. These results suggest that this geographic scale is not adequate for future New World screwworm fly management in South America.
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Affiliation(s)
- Luana W Bergamo
- Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil
- Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil
| | - Pablo Fresia
- Unidad de Bioinformática, Institut Pasteur de Montevideo, Montevideo, Uruguay
| | - Mariana L Lyra
- Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho, Rio Claro, SP, Brazil
| | - Ana Maria L Azeredo-Espin
- Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil
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9
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Skoda SR, Phillips PL, Welch JB. Screwworm (Diptera: Calliphoridae) in the United States: Response to and Elimination of the 2016-2017 Outbreak in Florida. JOURNAL OF MEDICAL ENTOMOLOGY 2018; 55:777-786. [PMID: 29722869 DOI: 10.1093/jme/tjy049] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Indexed: 06/08/2023]
Abstract
Eradicating screwworm, Cochliomyia hominivorax (Coquerel), from continental North American via the sterile insect technique has provided huge economic benefit to livestock producers by eliminating screwworm myiasis. After confirmatory identification of fly samples from infested deer by the USDA National Veterinary Services Laboratory on September 30, 2016, an alert was issued that screwworm myiasis was discovered in the Florida Keys. Personnel from USDA Animal and Plant Health Inspection Service, Agricultural Research Service, the State of Florida, U.S. Fish and Wildlife Service and local officials responded to the outbreak focus on Big Pine Key. After witnessing infested Key deer (Odocoileus virginianus clavium Barboyr & Allen), screwworm adult sampling was initiated at 0930 h on October 5, 2016 using nets to collect flies arriving at putrid liver, with the first female collected within 1 h. Larval samples were collected from infested animals for DNA analyses and to develop a "Florida outbreak" colony to test mating compatibility with the mass-produced strain used for sterile fly releases. Ground release chambers for sterile screwworm releases were placed in favorable habitats based on satellite image analyses. Sterile pupae were first placed in the chambers on October 11, 2016. Further liver trapping showed that 13 Keys were infested. One case, presumably through animal movement, occurred near Homestead on the Florida mainland. Ultimately there were 35 sterile fly release stations, including 4 located around Homestead, but no further cases were identified. About 188 million sterile flies were released until successful eradication was declared on March 23, 2017. Containing the outbreak prevented economic losses to livestock producers and other wildlife on the mainland and kept eradication costs to a minimum.
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Affiliation(s)
- Steven R Skoda
- USDA-ARS-KBUSLIRL, Screwworm Research, Fredericksburg Road, Kerrville, TX
| | - Pamela L Phillips
- USDA-ARS-KBUSLIRL, Screwworm Research, Fredericksburg Road, Kerrville, TX
| | - John B Welch
- USDA-APHIS-IS, Action Programs, USDA, ARS, SPARC, College Station, TX
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10
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Dupuis JR, Guerrero FD, Skoda SR, Phillips PL, Welch JB, Schlater JL, Azeredo-Espin AML, Pérez de León AA, Geib SM. Molecular Characterization of the 2016 New World Screwworm (Diptera: Calliphoridae) Outbreak in the Florida Keys. JOURNAL OF MEDICAL ENTOMOLOGY 2018; 55:938-946. [PMID: 29788142 DOI: 10.1093/jme/tjy078] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2018] [Indexed: 06/08/2023]
Abstract
New World screwworm (NWS), Cochliomyia hominivorax (Coquerel 1858) (Diptera: Calliphoridae), is a myiasis-causing fly that can be a serious threat to the health of livestock, wildlife, and humans. Its progressive eradication from the southern United States, Mexico, and Central America from the 1950s to 2000s is an excellent example of successful pest management using sterile insect technique (SIT). In late 2016, autochthonous NWS were detected in the Florida Keys, representing this species' first invasion in the United States in >30 yr. Rapid use of quarantine and SIT was successful in eliminating the infestation by early 2017; however, the geographic source of this infestation remains unknown. Here, we use amplicon sequencing to generate mitochondrial and nuclear sequence data representing all confirmed cases of NWS from this infestation, and compare these sequences to preexisting data sets sampling the native distribution of NWS. We ask two questions regarding the FL Keys outbreak. First, is this infestation the result of a single invasion from one source, or multiple invasions from different sources? And second, what is the geographic origin of this invasion? We found virtually no sequence variation between specimens collected from the FL Keys outbreak, which is consistent with a single source of introduction. However, we also found very little geographic resolution in any of the data sets, which precludes identification of the source of this outbreak. Our lack of success in answering our second question speaks to the need for finer-scale genetic or genomic assessments of NWS population structure, which would facilitate source determination of potential future outbreaks.
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Affiliation(s)
- Julian R Dupuis
- U.S. Department of Agriculture-Agricultural Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, HI
- Department of Plant and Environmental Protection Services, University of Hawaii at Manoa, Honolulu, HI
| | - Felix D Guerrero
- USDA-ARS, Knipling-Bushland U.S. Livestock Insects Research Laboratory and Veterinary Pest Genomics Center, Kerrville, TX
| | - Steven R Skoda
- USDA-ARS, Knipling-Bushland U.S. Livestock Insects Research Laboratory and Veterinary Pest Genomics Center, Kerrville, TX
| | - Pamela L Phillips
- USDA-ARS, Knipling-Bushland U.S. Livestock Insects Research Laboratory and Veterinary Pest Genomics Center, Kerrville, TX
| | - John B Welch
- USDA-APHIS, International Services, Action Programs, College Station, TX
| | - Jack L Schlater
- USDA-APHIS, National Veterinary Services Laboratory, Ames, IA
| | - Ana Maria L Azeredo-Espin
- Centro de Biologia Molecular e Engenharia Genética and Departamento de Genética, Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas Instituto de Biologia, São Paulo, Brazil
| | - Adalberto A Pérez de León
- USDA-ARS, Knipling-Bushland U.S. Livestock Insects Research Laboratory and Veterinary Pest Genomics Center, Kerrville, TX
| | - Scott M Geib
- U.S. Department of Agriculture-Agricultural Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, HI
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Maxwell MJ, Subia J, Abrego J, Garabed R, Xiao N, Toribio RE. Temporal and Spatial Analysis of the New World Screwworm (Cochliomyia hominivorax) in Darien and Embera, Panama (2001-2011). Transbound Emerg Dis 2015; 64:899-905. [PMID: 26681114 DOI: 10.1111/tbed.12457] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2015] [Indexed: 11/27/2022]
Abstract
Larvae (maggots) of Cochliomyia hominivorax, the New World Screwworm fly, are voracious consumers of living flesh that have a negative economic impact by decreasing productivity, predisposing to other pathogens, and, in severe cases, causing death of domestic livestock. Screwworm caused extensive financial losses to the livestock industry in North America prior to its eradication. Sterile insect technique (SIT) was used to eradicate screwworm throughout North and Central America and continues to be the main tool to control it in eastern Panama. The goal of this study was to evaluate the temporal and spatial trends of screwworm myiasis cases reported in the Province of Darien and Comarca Embera (border with Colombia), Panama, from 2001 to 2011. We hypothesized that screwworm cases would vary seasonally and be spatially clustered near Colombia as a result of effective eradication strategies in Panama and the presence of an autochthonous population of flies in western Colombia. Temporal and spatial data were retrieved from COPEG-USDA records (Panama) and analysed by anova, Ripley's K function, discrete Poisson spatial statistic scan and Getis-Ord Gi*. No significant temporal trend was found, but cases were spatially distributed in four clusters. One cluster of cases occurred from 2001 to 2003 and was considered a focal temporal and spatial cluster. One cluster occurred in 2001 and 2007 indicating more rare outbreaks in an area with fewer cattle. The two remaining clusters contained cases from 2004 to 2011 and 2001 to 2011 suggesting regular breaks in the control barrier due to occasional failures of the SIT programme, difficulties implementing border quarantine strategies, livestock smuggling or the movement of infested wildlife.
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Affiliation(s)
- M J Maxwell
- College of Veterinary Medicine, The Ohio State University, Columbus, OH, USA
| | - J Subia
- COPEG/USDA, Panama City, Panama
| | | | - R Garabed
- College of Veterinary Medicine, The Ohio State University, Columbus, OH, USA
| | - N Xiao
- Department of Geography, The Ohio State University, Columbus, OH, USA
| | - R E Toribio
- College of Veterinary Medicine, The Ohio State University, Columbus, OH, USA
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Bergamo LW, Fresia P, Azeredo-Espin AML. Incongruent nuclear and mitochondrial genetic structure of new world screwworm fly populations due to positive selection of mutations associated with dimethyl- and diethyl-organophosphates resistance. PLoS One 2015; 10:e0128441. [PMID: 26030866 PMCID: PMC4451984 DOI: 10.1371/journal.pone.0128441] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2015] [Accepted: 04/27/2015] [Indexed: 11/30/2022] Open
Abstract
Livestock production is an important economic activity in Brazil, which has been suffering significant losses due to the impact of parasites. The New World screwworm (NWS) fly, Cochliomyia hominivorax, is an ectoparasite and one of the most important myiasis-causing flies endemic to the Americas. The geographic distribution of NWS has been reduced after the implementation of the Sterile Insect Technique (SIT), being eradicated in North America and part of Central America. In South America, C. hominivorax is controlled by chemical insecticides, although indiscriminate use can cause selection of resistant individuals. Previous studies have associated the Gly137Asp and Trp251Leu mutations in the active site of carboxylesterase E3 to resistance of diethyl and dimethyl-organophosphates insecticides, respectively. Here, we have sequenced a fragment of the carboxylesterase E3 gene (ChαE7), comprising part of intron iII, exon eIII, intron iIII and part of exon eIV, and three mitochondrial gene sequences (CR, COI and COII), of NWS flies from 21 locations in South America. These markers were used for population structure analyses and the ChαE7 gene was also investigated to gain insight into the selective pressures that have shaped its evolution. Analysis of molecular variance (AMOVA) and pairwise FST analysis indicated an increased genetic structure between locations in the ChαE7 compared to the concatenated mitochondrial genes. Discriminant analysis of principal components (DAPC) and spatial analysis of molecular variance (SAMOVA) indicated different degrees of genetic structure for all markers, in agreement with the AMOVA results, but with low correlation to geographic data. The NWS fly is considered a panmitic species based on mitochondrial data, while it is structured into three groups considering the ChαE7 gene. A negative association between the two mutations related to organophosphate resistance and Fay & Wu’s H significant negative values for the exons, suggest that these mutations evolved under positive selection.
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Affiliation(s)
- Luana Walravens Bergamo
- Center for Molecular Biology and Genetic Engineering (CBMEG), Campinas State University (UNICAMP), Campinas, SP, Brazil
- Department of Genetics, Evolution and Bioagents (DGEB), Institute of Biology (IB), Campinas State University (UNICAMP), Campinas, SP, Brazil
- * E-mail:
| | - Pablo Fresia
- Center for Molecular Biology and Genetic Engineering (CBMEG), Campinas State University (UNICAMP), Campinas, SP, Brazil
| | - Ana Maria L. Azeredo-Espin
- Center for Molecular Biology and Genetic Engineering (CBMEG), Campinas State University (UNICAMP), Campinas, SP, Brazil
- Department of Genetics, Evolution and Bioagents (DGEB), Institute of Biology (IB), Campinas State University (UNICAMP), Campinas, SP, Brazil
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Feldmann U, Ready P. Applying GIS and population genetics for managing livestock insect pests: case studies of tsetse and screwworm flies. Acta Trop 2014; 138 Suppl:S1-5. [PMID: 24713196 DOI: 10.1016/j.actatropica.2014.03.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Revised: 03/24/2014] [Accepted: 03/26/2014] [Indexed: 10/25/2022]
Abstract
The Food and Agriculture Organization of the United Nations (FAO) and the International Atomic Energy Agency (IAEA) have supported a Co-ordinated Research Project (CRP) on 'Applying GIS and population genetics for managing livestock insect pests'. This six-year CRP (2008-2013) focused on research aimed at under-pinning the Area-Wide Integrated Pest Management (AW-IPM) of populations of tsetse and screwworm flies, and this introductory paper to the Special Issue integrates the findings of the CRP participants and discusses them in a broader context. The tools and techniques for mapping and modelling the distributions of genetically-characterised populations of tsetse and screwworm flies are increasingly used by researchers and managers for more effective decision-making in AW-IPM programmes, as illustrated by the reports in this Special Issue. Currently, the insect pests are often characterized only by neutral genetic markers suitable for recognizing spatially isolated populations that are sometimes associated with specific environments. Two challenges for those involved in AW-IPM are the standardization of best practice to permit the efficient application of GIS and genetic tools by regional teams, and the need to develop further the mapping and modelling of parasite and pest phenotypes that are epidemiologically important.
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Mastrangelo T, Fresia P, Lyra ML, Rodrigues RA, Azeredo-Espin AML. Genetic diversity and population structure of the New World screwworm fly from the Amazon region of Brazil. Acta Trop 2014; 138 Suppl:S26-33. [PMID: 24731964 DOI: 10.1016/j.actatropica.2014.04.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Revised: 04/01/2014] [Accepted: 04/02/2014] [Indexed: 11/25/2022]
Abstract
Cochliomyia hominivorax (Coquerel) is a myiasis fly that causes economic losses to livestock farmers in warmer American regions. Previous studies of this pest had found population structure at north and south of the Amazon Basin, which was considered to be a barrier to dispersal. The present study analyzed three mitochondrial DNA (mtDNA) markers and eight nuclear microsatellite loci to investigate for the first time the genetic diversity and population structure across the Brazilian Amazon region (Amazonia). Both mtDNA and microsatellite data supported the existence of much diversity and significant population structure among nine regional populations of C. hominivorax, which was found to be surprisingly common in Amazonia. Forty-six mtDNA haplotypes were identified, of which 39 were novel and seven had previously been found only at south of Amazonia. Seventy microsatellite alleles were identified by size, moderate to high values of heterozygosity were discovered in all regions, and a Bayesian clustering analysis identified four genetic groups that were not geographically distributed. Reproductive compatibility was also investigated by laboratory crossing, but no evidence of hybrid dysgenesis was found between an Amazonian colony and one each of from Northeast and Southeast Brazil. The results have important implications for area-wide control by the Sterile Insect Technique.
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Applying spatial analysis of genetic and environmental data to predict connection corridors to the New World screwworm populations in South America. Acta Trop 2014; 138 Suppl:S34-41. [PMID: 24742908 DOI: 10.1016/j.actatropica.2014.04.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Revised: 04/02/2014] [Accepted: 04/03/2014] [Indexed: 11/23/2022]
Abstract
The myiasis causing New World screwworm (NWS) fly is responsible for substantial losses to livestock breeders in the Americas. Due to the negative impact of the NWS fly in animal health, expansion of successful NWS fly eradication programmes is under discussion. However, the effects of geography and environmental diversity on NWS population structure and migration patterns need to be assessed before any political decision is made to implement such a programme. We present a GIS tool to construct potential connection corridors among sampling localities based on genetic and environmental data. We integrate, through a home-made python script, a friction raster based on a Maxent niche model and the pairwise ΦST statistic. Among 38 NWS fly sampling localities from South America, we find a high population connectivity among the sampling localities from the south of the Amazon region. The region along the Atlantic Ocean was identified as the most probable migration corridor between the north (NAG) and the south (SAG) of the Amazon region. The approach highlighted previously undetected population structure within NAG showing low to medium connectivity through the Andes, correlating with current understanding of NWS fly migration in South America. Also, the approach is flexible, allowing future research to incorporate other niche simulations and genetic differentiation metrics. With this flexibility, the tool could become part of any AW-IPM by helping to target regions for control.
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Fresia P, Azeredo-Espin AML, Lyra ML. The phylogeographic history of the new world screwworm fly, inferred by approximate bayesian computation analysis. PLoS One 2013; 8:e76168. [PMID: 24098436 PMCID: PMC3788763 DOI: 10.1371/journal.pone.0076168] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2013] [Accepted: 08/21/2013] [Indexed: 11/20/2022] Open
Abstract
Insect pest phylogeography might be shaped both by biogeographic events and by human influence. Here, we conducted an approximate Bayesian computation (ABC) analysis to investigate the phylogeography of the New World screwworm fly, Cochliomyia hominivorax, with the aim of understanding its population history and its order and time of divergence. Our ABC analysis supports that populations spread from North to South in the Americas, in at least two different moments. The first split occurred between the North/Central American and South American populations in the end of the Last Glacial Maximum (15,300-19,000 YBP). The second split occurred between the North and South Amazonian populations in the transition between the Pleistocene and the Holocene eras (9,100-11,000 YBP). The species also experienced population expansion. Phylogenetic analysis likewise suggests this north to south colonization and Maxent models suggest an increase in the number of suitable areas in South America from the past to present. We found that the phylogeographic patterns observed in C. hominivorax cannot be explained only by climatic oscillations and can be connected to host population histories. Interestingly we found these patterns are very coincident with general patterns of ancient human movements in the Americas, suggesting that humans might have played a crucial role in shaping the distribution and population structure of this insect pest. This work presents the first hypothesis test regarding the processes that shaped the current phylogeographic structure of C. hominivorax and represents an alternate perspective on investigating the problem of insect pests.
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Affiliation(s)
- Pablo Fresia
- Departamento de Entomologia e Acarologia, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, São Paulo, Brasil
- * E-mail:
| | - Ana Maria L. Azeredo-Espin
- Centro de Biologia Molecular e Engenharia Genética and Instituto de Biologia, Universidade Estadual de Campinas, São Paulo, Brasil
| | - Mariana L. Lyra
- Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista, São Paulo, Brasil
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Fresia P, Lyra ML, Coronado A, De Azeredo-Espin AML. Genetic structure and demographic history of new world screwworm across its current geographic range. JOURNAL OF MEDICAL ENTOMOLOGY 2011; 48:280-290. [PMID: 21485363 DOI: 10.1603/me10153] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The phylogeographical history of the pest fly screwworm, Cochliomyia hominivorax (Coquerel), was studied using partial mitochondrial DNA sequences of the control region, Cytochrome c oxidase (CO) subunit I and CO subunit II from 361 individuals collected across its current geographic range. Analyses showed marked genetic differentiation on a macrogeographic scale. The genetic diversity in the species is structured into four main "regional groups," corresponding to Cuba, the Dominican Republic, and the North and South Amazon region. Results indicated that the distribution of screwworm genetic diversity was mainly shaped by historical events, i.e., colonization of Caribbean islands, vicariance in the Amazon region and population expansion. Demographic history analyses revealed that the population expansion started approximately 20-25,000 yr ago and recently increased exponentially. We hypothesized that the initial period of expansion was probably associated with environmental amelioration in the late Pleistocene and the exponential increase with resource availability in recent times. The population expansion is probably responsible for the low divergence and the lack of genetic and geographic correlation in the South Amazon region but did not erase the genetic structure pattern on a continental scale. The screwworm is one of the most damaging livestock pests in South and Central America, and the pattern of genetic variability distribution reported here suggests that the Caribbean area and the North and South Amazon regions could be considered as independent units for future pest control programs.
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Affiliation(s)
- Pablo Fresia
- Laboratório de Genética e Evolução Animal-Centro de Biologia Molecular e Engenharia Genética and Instituto de Biologia, Universidade Estadual de Campinas, CEP 13083-875, Campinas, São Paulo, Brazil.
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Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance. BMC Genomics 2010; 11:695. [PMID: 21143848 PMCID: PMC3022914 DOI: 10.1186/1471-2164-11-695] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2010] [Accepted: 12/08/2010] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The New World screw-worm (NWS), Cochliomyia hominivorax, is one of the most important myiasis-causing flies, causing severe losses to the livestock industry. In its current geographical distribution, this species has been controlled by the application of insecticides, mainly organophosphate (OP) compounds, but a number of lineages have been identified that are resistant to such chemicals. Despite its economic importance, only limited genetic information is available for the NWS. Here, as a part of an effort to characterize the C. hominivorax genome and identify putative genes involved in insecticide resistance, we sampled its transcriptome by deep sequencing of polyadenylated transcripts using the 454 sequencing technology. RESULTS Deep sequencing on the 454 platform of three normalized libraries (larval, adult male and adult female) generated a total of 548,940 reads. Eighteen candidate genes coding for three metabolic detoxification enzyme families, cytochrome P450 monooxygenases, glutathione S-transferases and carboxyl/cholinesterases were selected and gene expression levels were measured using quantitative real-time polymerase chain reaction (qRT-PCR). Of the investigated candidates, only one gene was expressed differently between control and resistant larvae with, at least, a 10-fold down-regulation in the resistant larvae. The presence of mutations in the acetylcholinesterase (target site) and carboxylesterase E3 genes was investigated and all of the resistant flies presented E3 mutations previously associated with insecticide resistance. CONCLUSIONS Here, we provided the largest database of NWS expressed sequence tags that is an important resource, not only for further studies on the molecular basis of the OP resistance in NWS fly, but also for functional and comparative studies among Calliphoridae flies. Among our candidates, only one gene was found differentially expressed in resistant individuals, and its role on insecticide resistance should be further investigated. Furthermore, the absence of mutations in the OP target site and the high frequency of mutant carboxylesterase E3 indicate that metabolic resistance mechanisms have evolved predominantly in this species.
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Robinson AS, Vreysen MJB, Hendrichs J, Feldmann U. Enabling technologies to improve area-wide integrated pest management programmes for the control of screwworms. MEDICAL AND VETERINARY ENTOMOLOGY 2009; 23 Suppl 1:1-7. [PMID: 19335824 DOI: 10.1111/j.1365-2915.2008.00769.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The economic devastation caused in the past by the New World screwworm fly Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) to the livestock industry in the U.S.A., Mexico and the rest of Central America was staggering. The eradication of this major livestock pest from North and Central America using the sterile insect technique (SIT) as part of an area-wide integrated pest management (AW-IPM) programme was a phenomenal technical and managerial accomplishment with enormous economic implications. The area is maintained screwworm-free by the weekly release of 40 million sterile flies in the Darien Gap in Panama, which prevents migration from screwworm-infested areas in Columbia. However, the species is still a major pest in many areas of the Caribbean and South America and there is considerable interest in extending the eradication programme to these countries. Understanding New World screwworm fly populations in the Caribbean and South America, which represent a continuous threat to the screwworm-free areas of Central America and the U.S.A., is a prerequisite to any future eradication campaigns. The Old World screwworm fly Chrysomya bezziana Villeneuve (Diptera: Calliphoridae) has a very wide distribution ranging from Southern Africa to Papua New Guinea and, although its economic importance is assumed to be less than that of its New World counterpart, it is a serious pest in extensive livestock production and a constant threat to pest-free areas such as Australia. In the 1980s repeated introductions and an expansion of Old World screwworm populations were reported in the Middle East; in the 1990s it invaded Iraq and since late 2007 it has been reported in Yemen, where a severe outbreak of myiasis occurred in 2008. Small-scale field trials have shown the potential of integrating the SIT in the control of this pest and various international organizations are considering using the release of sterile insects as part of an AW-IPM approach on a much wider scale. Wohlfahrtia magnifica (Schiner) (Diptera: Sarcophagidae) is a screwworm of temperate regions, which, although of limited agricultural importance, has invaded several new locations in the past few years. This special issue reports on the results of a 6-year project funded by the Joint Food and Agriculture Organization of the United Nations/International Atomic Energy Agency (FAO/IAEA) Programme of Nuclear Techniques in Food and Agriculture entitled 'Enabling Technologies for the Expansion of the SIT for Old and New World Screwworm'. A major goal of the project was to better understand population genetic variation in screwworms as an aid to the identification of isolated populations. The project also addressed issues related to genetic sexing, cuticular hydrocarbons, population dynamics, genetic transformation and chromosome analysis.
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Affiliation(s)
- A S Robinson
- Joint Food and Agriculture Organization of the United Nations/International Atomic Energy Agency (FAO/IAEA) Programme of Nuclear Techniques in Food and Agriculture, Vienna, Austria.
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