Kinship and genetic divergence among populations of tuatara Sphenodon punctatus as revealed by minisatellite DNA profiling

Sex-biased dispersal and a density-independent mating system in the Australian brushtail possum, as revealed by minisatellite DNA profiling

Natal dispersal can have important effects on mammal population structure and dynamics following a local population crash. Such dispersal is of practical importance when applied to the control of pest species because dispersal may significantly, and undesirably, reduce the population recovery time following a control operation. The relative dispersal rate of the sexes is also critical because that too will affect the rate of population increase. Here, we describe a field experiment in which we reduce the density of two populations of the Australian brushtail possum, and use genetic similarity, as estimated by minisatellite DNA profiles, to investigate dispersal in the original (undisturbed) and recovering populations. Our results show that the genetic similarity within the undisturbed populations was lower between males than between females. Conversely, the genetic similarities between males and females in the two recovering populations were not significantly different, while relatedness among males was significantly higher in the recovering populations when compared with those in the pre-removal populations. These data indicate two important characteristics of dispersal in possums: (i) that dispersal in established populations is sex biased towards males; and (ii) that within the first 3 years following population control, 'the vacuum effect', whereby individuals from areas adjacent to a control area expand their home range and invade the depopulated area, is the most important factor in the re-colonization process for possums. We found no evidence that the mating system, which is polygynous, varied when the density was markedly reduced. These results indicate that drastic reductions in population density by conventional control will not affect the rate of spread of biological control agents that rely on sexual transmission for dissemination.

Genetic structure and gene flow among Komodo dragon populations inferred by microsatellite loci analysis

A general concern for the conservation of endangered species is the maintenance of genetic variation within populations, particularly when they become isolated and reduced in size. Estimates of gene flow and effective population size are therefore important for any conservation initiative directed to the long-term persistence of a species in its natural habitat. In the present study, 10 microsatellite loci were used to assess the level of genetic variability among populations of the Komodo dragon Varanus komodoensis. Effective population size was calculated and gene flow estimates were compared with palaeogeographic data in order to assess the degree of vulnerability of four island populations. Rinca and Flores, currently separated by an isthmus of about 200 m, retained a high level of genetic diversity and showed a high degree of genetic similarity, with gene flow values close to one migrant per generation. The island of Komodo showed by far the highest levels of genetic divergence, and its allelic distinctiveness was considered of great importance in the maintenance of genetic variability within the species. A lack of distinct alleles and low levels of gene flow and genetic variability were found for the small population of Gili Motang island, which was identified as vulnerable to stochastic threats. Our results are potentially important for both the short- and long-term management of the Komodo dragon, and are critical in view of future re-introduction or augmentation in areas where the species is now extinct or depleted.

DNA fingerprinting data and the analysis of population genetic structure by comparing band-sharing patterns

Genetic isolation among populations can be effectively investigated by multilocus DNA fingerprinting. If populations have diverged, it is expected that the mean proportion of bands shared by individuals from the same population, Bw, exceeds the corresponding mean, Bb, calculated from pairs of individuals from distinct populations. A problem arises in deciding whether any difference between Bw and Bb is statistically significant. In fact, any two band-sharing data (bij), contributing to Bw or Bb, are not independent if they share a common individual (like bij and bjl). This prevents a correct application of parametric tests, such as the Student's t-test. Recently, a modification of this test has been proposed that should avoid the independence problem. Using a large number of samples of fingerprints, simulated from an appropriate 'genetic' model, under a wide range of conditions, we compared the performances of the Student's t-test, the modified t-test and five new permutation tests, where individuals, rather than bij values, are permuted. We found that: (i) the Student's t-test can be very permissive, rejecting too often the null hypothesis when true, but is correct or conservative in certain cases; (ii) the modified t-test is extremely conservative when the null hypothesis is true and very inefficient otherwise; (iii) all five permutation tests are strictly correct, provided that individuals are ordered randomly on gels; and (iv) in this case, the permutation tests are equally efficient, and are not inferior to the Student's t-test when the latter is approximately correct and provides a fair benchmark.

Floater males gain reproductive success through extrapair fertilizations in the stitchbird

We used minisatellite DNA profiling to assign parentage to stitchbird, Notiomystis cincta, chicks from a breeding population on Tiritiri Matangi Island off the coast of the North Island of New Zealand. The small population size allowed samples to be collected from all potential parents and nearly (33/34 nestlings) complete assignment of paternity. Analysis revealed that 35% of nestlings (12/34) were the result of extrapair copulation and that extrapair young were present in 80% of nests (8/10). About half of the extrapair nestlings were the offspring of unpaired males. This is substantially higher than predicted from the literature, which suggests that extrapair paternity is typically gained by paired males. Copyright 1999 The Association for the Study of Animal Behaviour.