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Croft DP, Weiss MN, Nielsen MLK, Grimes C, Cant MA, Ellis S, Franks DW, Johnstone RA. Kinship dynamics: patterns and consequences of changes in local relatedness. Proc Biol Sci 2021; 288:20211129. [PMID: 34403632 PMCID: PMC8370800 DOI: 10.1098/rspb.2021.1129] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 07/26/2021] [Indexed: 01/16/2023] Open
Abstract
Mounting evidence suggests that patterns of local relatedness can change over time in predictable ways, a process termed kinship dynamics. Kinship dynamics may occur at the level of the population or social group, where the mean relatedness across all members of the population or group changes over time, or at the level of the individual, where an individual's relatedness to its local group changes with age. Kinship dynamics are likely to have fundamental consequences for the evolution of social behaviour and life history because they alter the inclusive fitness payoffs to actions taken at different points in time. For instance, growing evidence suggests that individual kinship dynamics have shaped the evolution of menopause and age-specific patterns of helping and harming. To date, however, the consequences of kinship dynamics for social evolution have not been widely explored. Here we review the patterns of kinship dynamics that can occur in natural populations and highlight how taking a kinship dynamics approach has yielded new insights into behaviour and life-history evolution. We discuss areas where analysing kinship dynamics could provide new insight into social evolution, and we outline some of the challenges in predicting and quantifying kinship dynamics in natural populations.
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Affiliation(s)
- Darren P. Croft
- Centre for Research in Animal Behaviour, University of Exeter, Exeter, UK
| | - Michael N. Weiss
- Centre for Research in Animal Behaviour, University of Exeter, Exeter, UK
- Center for Whale Research, Friday Harbour, WA, USA
| | - Mia L. K. Nielsen
- Centre for Research in Animal Behaviour, University of Exeter, Exeter, UK
| | - Charli Grimes
- Centre for Research in Animal Behaviour, University of Exeter, Exeter, UK
| | - Michael A. Cant
- Centre for Ecology and Conservation, University of Exeter, Penryn Campus, Cornwall, UK
| | - Samuel Ellis
- Centre for Research in Animal Behaviour, University of Exeter, Exeter, UK
| | - Daniel W. Franks
- Department of Biology, University of York, York, UK
- Department of Computer Science, University of York, York, UK
| | - Rufus A. Johnstone
- Behaviour and Evolution Group, Department of Zoology, University of Cambridge, Cambridge, UK
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2
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Bluher SE, Miller SE, Sheehan MJ. Fine-Scale Population Structure but Limited Genetic Differentiation in a Cooperatively Breeding Paper Wasp. Genome Biol Evol 2020; 12:701-714. [PMID: 32271866 PMCID: PMC7259676 DOI: 10.1093/gbe/evaa070] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/03/2020] [Indexed: 12/16/2022] Open
Abstract
Relatively little is known about the processes shaping population structure in cooperatively breeding insect species, despite the long-hypothesized importance of population structure in shaping patterns of cooperative breeding. Polistes paper wasps are primitively eusocial insects, with a cooperative breeding system in which females often found nests in cooperative associations. Prior mark-recapture studies of Polistes have documented extreme female philopatry, although genetic studies frequently fail to detect the strong population structure expected for highly philopatric species. Together these findings have led to lack of consensus on the degree of dispersal and population structure in these species. This study assessed population structure of female Polistes fuscatus wasps at three scales: within a single site, throughout Central New York, and across the Northeastern United States. Patterns of spatial genetic clustering and isolation by distance were observed in nuclear and mitochondrial genomes at the continental scale. Remarkably, population structure was evident even at fine spatial scales within a single collection site. However, P. fuscatus had low levels of genetic differentiation across long distances. These results suggest that P. fuscatus wasps may employ multiple dispersal strategies, including extreme natal philopatry as well as longer-distance dispersal. We observed greater genetic differentiation in mitochondrial genes than in the nuclear genome, indicative of increased dispersal distances in males. Our findings support the hypothesis that limited female dispersal contributes toward population structure in paper wasps.
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Affiliation(s)
- Sarah E Bluher
- Department of Neurobiology and Behavior, Cornell University
| | - Sara E Miller
- Department of Neurobiology and Behavior, Cornell University
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3
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Cayuela H, Boualit L, Laporte M, Prunier JG, Preiss F, Laurent A, Foletti F, Clobert J, Jacob G. Kin-dependent dispersal influences relatedness and genetic structuring in a lek system. Oecologia 2019; 191:97-112. [PMID: 31422471 DOI: 10.1007/s00442-019-04484-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 08/08/2019] [Indexed: 10/26/2022]
Abstract
Kin selection and dispersal play a critical role in the evolution of cooperative breeding systems. Limited dispersal increases relatedness in spatially structured populations (population viscosity), with the result that neighbours tend to be genealogical relatives. Yet the increase in neighbours' fitness-related performance through altruistic interaction may also result in habitat saturation and thus exacerbate local competition between kin. Our goal was to detect the footprint of kin selection and competition by examining the spatial structure of relatedness and by comparing non-effective and effective dispersal in a population of a lekking bird, Tetrao urogallus. For this purpose, we analysed capture-recapture and genetic data collected over a 6-year period on a spatially structured population of T. urogallus in France. Our findings revealed a strong spatial structure of relatedness in males. They also indicated that the population viscosity could allow male cooperation through two non-exclusive mechanisms. First, at their first lek attendance, males aggregate in a lek composed of relatives. Second, the distance corresponding to non-effective dispersal dramatically outweighed effective dispersal distance, which suggests that dispersers incur high post-settlement costs. These two mechanisms result in strong population genetic structuring in males. In females, our findings revealed a lower level of spatial structure of relatedness and genetic structure in respect to males. Additionally, non-effective dispersal and effective dispersal distances in females were highly similar, which suggests limited post-settlement costs. These results indicate that kin-dependent dispersal decisions and costs have a genetic footprint in wild populations and are factors that may be involved in the evolution of cooperative courtship.
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Affiliation(s)
- Hugo Cayuela
- Département de Biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Pavillon Charles-Eugène-Marchand, Québec, QC, G1V 0A6, Canada.
| | - Laurent Boualit
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| | - Martin Laporte
- Département de Biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Pavillon Charles-Eugène-Marchand, Québec, QC, G1V 0A6, Canada
| | - Jérôme G Prunier
- Theoretical and Experimental Ecology Station (UMR 5371), National Centre for Scientific Research (CNRS), Paul Sabatier University (UPS), Moulis, France
| | - Françoise Preiss
- Groupe Tétras Vosges, Maison du Parc, 1, cour de l'Abbaye, 68140, Munster, France
| | - Alain Laurent
- Groupe Tétras Vosges, Maison du Parc, 1, cour de l'Abbaye, 68140, Munster, France
| | - Francesco Foletti
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| | - Jean Clobert
- Theoretical and Experimental Ecology Station (UMR 5371), National Centre for Scientific Research (CNRS), Paul Sabatier University (UPS), Moulis, France
| | - Gwenaël Jacob
- Department of Biology, University of Fribourg, Fribourg, Switzerland
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4
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Myers JH. Population cycles: generalities, exceptions and remaining mysteries. Proc Biol Sci 2019; 285:rspb.2017.2841. [PMID: 29563267 DOI: 10.1098/rspb.2017.2841] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 02/28/2018] [Indexed: 01/17/2023] Open
Abstract
Population cycles are one of nature's great mysteries. For almost a hundred years, innumerable studies have probed the causes of cyclic dynamics in snowshoe hares, voles and lemmings, forest Lepidoptera and grouse. Even though cyclic species have very different life histories, similarities in mechanisms related to their dynamics are apparent. In addition to high reproductive rates and density-related mortality from predators, pathogens or parasitoids, other characteristics include transgenerational reduced reproduction and dispersal with increasing-peak densities, and genetic similarity among populations. Experiments to stop cyclic dynamics and comparisons of cyclic and noncyclic populations provide some understanding but both reproduction and mortality must be considered. What determines variation in amplitude and periodicity of population outbreaks remains a mystery.
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Affiliation(s)
- Judith H Myers
- Department of Zoology, University of British Columbia, Vancouver, BC, Canada V6T 1Z4
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5
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Johnsen K, Devineau O, Andreassen HP. Phase- and season-dependent changes in social behaviour in cyclic vole populations. BMC Ecol 2019; 19:5. [PMID: 30683090 PMCID: PMC6347810 DOI: 10.1186/s12898-019-0222-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 01/19/2019] [Indexed: 11/24/2022] Open
Abstract
Background Social behaviour has been linked to hypotheses explaining multiannual population cycles of small rodents. In this paper we aimed to test empirically that the degree of space sharing among adult breeding female voles is higher during the increase phase than in the crash phase, and that the degree of sociality is positively related to population growth rate as suggested by Lambin and Krebs (Oikos 61:126–132, 1991) and Andreassen et al. (Oikos 122:507–515, 2013). We followed 24 natural bank vole Myodes glareolus populations over an area of 113 km2 by monthly live trapping throughout a complete population cycle of three summers and two winters. Results Using spatially explicit capture-recapture models, we modelled the overlap in adult female home ranges and total population growth rate per season. We identified an increase phase before and during the peak density observation and a crash phase following the peak. Female home range overlap were seasonal- and phase-dependent, while population growth rate was associated with season and female home range overlap. High female home range overlap in the increase phase corresponded to a high population growth rate. Conclusions We suggest that intrinsic social behaviour plays a key role in the increase phase of vole population cycles, as social behaviour leads to an increased growth rate, whereas extrinsic factors (predation and/or food) initiate the crash phase. Our results are consistent with those of other studies in a variety of small rodent species.
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Affiliation(s)
- Kaja Johnsen
- Faculty of Applied Ecology, Agricultural Science and Biotechnology, Inland Norway University of Applied Sciences, 2480, Koppang, Norway.
| | - Olivier Devineau
- Faculty of Applied Ecology, Agricultural Science and Biotechnology, Inland Norway University of Applied Sciences, 2480, Koppang, Norway
| | - Harry P Andreassen
- Faculty of Applied Ecology, Agricultural Science and Biotechnology, Inland Norway University of Applied Sciences, 2480, Koppang, Norway
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6
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No behavioural response to kin competition in a lekking species. Behav Ecol Sociobiol 2016. [DOI: 10.1007/s00265-016-2154-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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7
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Intra-sexual competition modulates calling behavior and its association with secondary sexual traits. Behav Ecol Sociobiol 2016. [DOI: 10.1007/s00265-016-2169-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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8
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Piertney SB. High-Throughput DNA Sequencing and the Next Generation of Molecular Markers in Wildlife Research. CURRENT TRENDS IN WILDLIFE RESEARCH 2016. [DOI: 10.1007/978-3-319-27912-1_9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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9
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Wenzel MA, Douglas A, James MC, Redpath SM, Piertney SB. The role of parasite-driven selection in shaping landscape genomic structure in red grouse (Lagopus lagopus scotica). Mol Ecol 2015; 25:324-41. [PMID: 26578090 DOI: 10.1111/mec.13473] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Revised: 11/09/2015] [Accepted: 11/10/2015] [Indexed: 12/25/2022]
Abstract
Landscape genomics promises to provide novel insights into how neutral and adaptive processes shape genome-wide variation within and among populations. However, there has been little emphasis on examining whether individual-based phenotype-genotype relationships derived from approaches such as genome-wide association (GWAS) manifest themselves as a population-level signature of selection in a landscape context. The two may prove irreconcilable as individual-level patterns become diluted by high levels of gene flow and complex phenotypic or environmental heterogeneity. We illustrate this issue with a case study that examines the role of the highly prevalent gastrointestinal nematode Trichostrongylus tenuis in shaping genomic signatures of selection in red grouse (Lagopus lagopus scotica). Individual-level GWAS involving 384 SNPs has previously identified five SNPs that explain variation in T. tenuis burden. Here, we examine whether these same SNPs display population-level relationships between T. tenuis burden and genetic structure across a small-scale landscape of 21 sites with heterogeneous parasite pressure. Moreover, we identify adaptive SNPs showing signatures of directional selection using F(ST) outlier analysis and relate population- and individual-level patterns of multilocus neutral and adaptive genetic structure to T. tenuis burden. The five candidate SNPs for parasite-driven selection were neither associated with T. tenuis burden on a population level, nor under directional selection. Similarly, there was no evidence of parasite-driven selection in SNPs identified as candidates for directional selection. We discuss these results in the context of red grouse ecology and highlight the broader consequences for the utility of landscape genomics approaches for identifying signatures of selection.
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Affiliation(s)
- Marius A Wenzel
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Alex Douglas
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Marianne C James
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Steve M Redpath
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Stuart B Piertney
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
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10
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Wenzel MA, James MC, Douglas A, Piertney SB. Genome-wide association and genome partitioning reveal novel genomic regions underlying variation in gastrointestinal nematode burden in a wild bird. Mol Ecol 2015; 24:4175-92. [PMID: 26179597 DOI: 10.1111/mec.13313] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Revised: 06/23/2015] [Accepted: 07/03/2015] [Indexed: 02/06/2023]
Abstract
Identifying the genetic architecture underlying complex phenotypes is a notoriously difficult problem that often impedes progress in understanding adaptive eco-evolutionary processes in natural populations. Host-parasite interactions are fundamentally important drivers of evolutionary processes, but a lack of understanding of the genes involved in the host's response to chronic parasite insult makes it particularly difficult to understand the mechanisms of host life history trade-offs and the adaptive dynamics involved. Here, we examine the genetic basis of gastrointestinal nematode (Trichostrongylus tenuis) burden in 695 red grouse (Lagopus lagopus scotica) individuals genotyped at 384 genome-wide SNPs. We first use genome-wide association to identify individual SNPs associated with nematode burden. We then partition genome-wide heritability to identify chromosomes with greater heritability than expected from gene content, due to harbouring a multitude of additive SNPs with individually undetectable effects. We identified five SNPs on five chromosomes that accounted for differences of up to 556 worms per bird, but together explained at best 4.9% of the phenotypic variance. These SNPs were closely linked to genes representing a range of physiological processes including the immune system, protein degradation and energy metabolism. Genome partitioning indicated genome-wide heritability of up to 29% and three chromosomes with excess heritability of up to 4.3% (total 8.9%). These results implicate SNPs and novel genomic regions underlying nematode burden in this system and suggest that this phenotype is somewhere between being based on few large-effect genes (oligogenic) and based on a large number of genes with small individual but large combined effects (polygenic).
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Affiliation(s)
- Marius A Wenzel
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Marianne C James
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Alex Douglas
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
| | - Stuart B Piertney
- Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
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11
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Wenzel MA, Piertney SB. Digging for gold nuggets: uncovering novel candidate genes for variation in gastrointestinal nematode burden in a wild bird species. J Evol Biol 2015; 28:807-25. [DOI: 10.1111/jeb.12614] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Revised: 02/13/2015] [Accepted: 02/16/2015] [Indexed: 12/16/2022]
Affiliation(s)
- M. A. Wenzel
- Institute of Biological and Environmental Sciences; University of Aberdeen; Aberdeen UK
| | - S. B. Piertney
- Institute of Biological and Environmental Sciences; University of Aberdeen; Aberdeen UK
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12
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Pizzari T, Biernaskie JM, Carazo P. Inclusive fitness and sexual conflict: how population structure can modulate the battle of the sexes. Bioessays 2014; 37:155-66. [PMID: 25389109 DOI: 10.1002/bies.201400130] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Competition over reproductive opportunities among members of one sex often harms the opposite sex, creating a conflict of interest between individual males and females. Recently, this battle of the sexes has become a paradigm in the study of intersexual coevolution. Here, we review recent theoretical and empirical advances suggesting that - as in any scenario of intraspecific competition - selfishness (competitiveness) can be influenced by the genetic relatedness of competitors. When competitors are positively related (e.g. siblings), an individual may refrain from harming its competitor(s) and their mate(s) because this can improve the focal individual's inclusive fitness. These findings reveal that population genetic structure might be of paramount importance when studying the battle of the sexes. We conclude by identifying some new lines of research at the interface of sexual selection and social evolution.
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Affiliation(s)
- Tommaso Pizzari
- Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK
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Lebigre C, Alatalo RV, Soulsbury CD, Höglund J, Siitari H. Limited indirect fitness benefits of male group membership in a lekking species. Mol Ecol 2014; 23:5356-65. [PMID: 25263625 DOI: 10.1111/mec.12941] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2014] [Revised: 09/22/2014] [Accepted: 09/22/2014] [Indexed: 11/28/2022]
Abstract
In group living species, individuals may gain the indirect fitness benefits characterizing kin selection when groups contain close relatives. However, tests of kin selection have primarily focused on cooperatively breeding and eusocial species, whereas its importance in other forms of group living remains to be fully understood. Lekking is a form of grouping where males display on small aggregated territories, which females then visit to mate. As females prefer larger aggregations, territorial males might gain indirect fitness benefits if their presence increases the fitness of close relatives. Previous studies have tested specific predictions of kin selection models using measures such as group-level relatedness. However, a full understanding of the contribution of kin selection in the evolution of group living requires estimating individuals' indirect fitness benefits across multiple sites and years. Using behavioural and genetic data from the black grouse (Tetrao tetrix), we show that the indirect fitness benefits of group membership were very small because newcomers joined leks containing few close relatives who had limited mating success. Males' indirect fitness benefits were higher in yearlings during increasing population density but marginally changed the variation in male mating success. Kin selection acting through increasing group size is therefore unlikely to contribute substantially to the evolution and maintenance of lekking in this black grouse population.
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Affiliation(s)
- Christophe Lebigre
- Catholic University of Louvain, Earth and Life Institute, Croix du Sud 4, B-1348, Louvain-la-Neuve, Belgium; Centre of Excellence in Evolutionary Research, Department of Biological and Environmental Science, University of Jyväskylä, PO Box 35, Jyväskylä, FI-40014, Finland
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14
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Gauffre B, Berthier K, Inchausti P, Chaval Y, Bretagnolle V, Cosson JF. Short-term variations in gene flow related to cyclic density fluctuations in the common vole. Mol Ecol 2014; 23:3214-25. [PMID: 24888708 DOI: 10.1111/mec.12818] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Revised: 05/12/2014] [Accepted: 05/14/2014] [Indexed: 11/29/2022]
Abstract
In highly fluctuating populations with complex social systems, genetic patterns are likely to vary in space and time due to demographic and behavioural processes. Cyclic rodents are extreme examples of demographically instable populations that often exhibit strong social organization. In such populations, kin structure and spacing behaviour may vary with density fluctuations and impact both the composition and spatial structure of genetic diversity. In this study, we analysed the multiannual genetic structure of a cyclic rodent, Microtus arvalis, using a sample of 875 individuals trapped over three complete cycles (from 1999 to 2007) and genotyped at 10 microsatellite loci. We tested the predictions that genetic diversity and gene flow intensity vary with density fluctuations. We found evidences for both spatial scale-dependant variations in genetic diversity and higher gene flow during high density. Moreover, investigation of sex-specific relatedness patterns revealed that, although dispersal is biased toward males in this species, distances moved by both sexes were lengthened during high density. Altogether, these results suggest that an increase in migration with density allows to restore the local loss of genetic diversity occurring during low density. We then postulate that this change in migration results from local competition, which enhances female colonization of empty spaces and male dispersal among colonies.
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Affiliation(s)
- Bertrand Gauffre
- INRA, USC 1339 (CEBC-CNRS), F-79360, Beauvoir sur Niort, France; CEBC-CNRS (UMR 7372), F-79360, Beauvoir sur Niort, France
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15
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Wenzel MA, Piertney SB. Fine-scale population epigenetic structure in relation to gastrointestinal parasite load in red grouse (Lagopus lagopus scotica). Mol Ecol 2014; 23:4256-73. [PMID: 24943398 PMCID: PMC4282444 DOI: 10.1111/mec.12833] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2014] [Revised: 06/10/2014] [Accepted: 06/11/2014] [Indexed: 12/27/2022]
Abstract
Epigenetic modification of cytosine methylation states can be elicited by environmental stresses and may be a key process affecting phenotypic plasticity and adaptation. Parasites are potent stressors with profound physiological and ecological effects on their host, but there is little understanding in how parasites may influence host methylation states. Here, we estimate epigenetic diversity and differentiation among 21 populations of red grouse (Lagopus lagopus scotica) in north-east Scotland and test for association of gastrointestinal parasite load (caecal nematode Trichostrongylus tenuis) with hepatic genome-wide and locus-specific methylation states. Following methylation-sensitive AFLP (MSAP), 129 bands, representing 73 methylation-susceptible and 56 nonmethylated epiloci, were scored across 234 individuals. The populations differed significantly in genome-wide methylation levels and were also significantly epigenetically (FSC = 0.0227; P < 0.001) and genetically (FSC = 0.0058; P < 0.001) differentiated. Parasite load was not associated with either genome-wide methylation levels or epigenetic differentiation. Instead, we found eight disproportionately differentiated epilocus-specific methylation states (FST outliers) using bayescan software and significant positive and negative association of 35 methylation states with parasite load from bespoke generalized estimating equations (GEE), simple logistic regression (sam) and Bayesian environmental analysis (bayenv2). Following Sanger sequencing, genome mapping and geneontology (go) annotation, some of these epiloci were linked to genes involved in regulation of cell cycle, signalling, metabolism, immune system and notably rRNA methylation, histone acetylation and small RNAs. These findings demonstrate an epigenetic signature of parasite load in populations of a wild bird and suggest intriguing physiological effects of parasite-associated cytosine methylation.
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Affiliation(s)
- Marius A Wenzel
- Institute of Biological and Environmental Sciences, University of Aberdeen, Zoology Building, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK
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16
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Martínez-Padilla J, Pérez-Rodríguez L, Mougeot F, Ludwig S, Redpath SM. Intra-sexual competition alters the relationship between testosterone and ornament expression in a wild territorial bird. Horm Behav 2014; 65:435-44. [PMID: 24698833 DOI: 10.1016/j.yhbeh.2014.03.012] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/04/2013] [Revised: 03/18/2014] [Accepted: 03/22/2014] [Indexed: 01/21/2023]
Abstract
In a reliable signalling system, individual quality is expected to mediate the costs associated with ornamental displays, with relatively lower costs being paid by individuals of higher quality. These relative costs should depend not only on individual quality, but also on levels of intra-sexual competition. We explored the current and delayed effects that testosterone implants have on bird ornamentation in populations with contrasted population densities, as a proxy for intra-sexual competition. In a replicated experiment, we manipulated testosterone in 196 yearling male red grouse Lagopus lagopus scoticus in autumn in populations of high and low levels of intra-sexual competition. Males were assigned to one of three exogenous testosterone (T) treatments: empty implants (T0), small T implants (T1) or larger T implants (T2). We monitored subsequent changes in testosterone levels, ornament size and carotenoid-based colouration, carotenoid levels and body condition from autumn to spring. Testosterone implants increased testosterone levels, comb redness and comb size, and decreased body condition but these effects depended on levels of intra-sexual competition. Specifically, T2-implanted birds increased testosterone levels and comb size more, and reduced body condition more, in populations where intra-sexual competition was low. In the following spring, testosterone levels of T2-treated birds kept increasing in populations where intra-sexual competition was high but not in populations where intra-sexual competition was low. Our results highlight that levels of intra-sexual competition alter the relationship between testosterone levels and ornament expression, influencing their condition-dependence; they also indicate that the outcome of standard hormone manipulation conducted in free-living animals vary depending on the population context.
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Affiliation(s)
- J Martínez-Padilla
- Department of Evolutionary Ecology, Museo Nacional de Ciencias Naturales, José Gutiérrez Abascal, 2, 23005, Madrid, Spain.
| | - L Pérez-Rodríguez
- Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC, UCLM, JCCM), Ronda de Toledo, s/n, 3005 Ciudad Real, Spain; Department of Evolutionary Ecology, Estación Biológica de Doñana, (EBD-CSIC), Avda. Americo Vespucio, s/n, 41092 Seville, Spain
| | - F Mougeot
- Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC, UCLM, JCCM), Ronda de Toledo, s/n, 3005 Ciudad Real, Spain; Estación Experimental de Zonas Áridas (CSIC), Ctra. de Sacramento s/n, La Cañada de San Urbano, 04120 Almería, Spain
| | - S Ludwig
- Game & Wildlife Conservation Trust, Eggleston Hall, Barnard Castle, DL12 0AG UK
| | - S M Redpath
- School of Biological Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen AB24 2TZ, UK
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Martínez-Padilla J, Pérez-Rodríguez L, Mougeot F, Ludwig SC, Redpath SM. Experimentally elevated levels of testosterone at independence reduce fitness in a territorial bird. Ecology 2014; 95:1033-44. [DOI: 10.1890/12-1905.1] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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18
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Martínez-Padilla J, Redpath SM, Zeineddine M, Mougeot F. Insights into population ecology from long-term studies of red grouseLagopus lagopus scoticus. J Anim Ecol 2013; 83:85-98. [DOI: 10.1111/1365-2656.12098] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2013] [Accepted: 04/30/2013] [Indexed: 01/17/2023]
Affiliation(s)
- Jesus Martínez-Padilla
- Museo Nacional de Ciencias Naturales; Department of Evolutionary Biology; José Guitérrez Abascal 2 28006 Madrid Spain
| | - Steve M. Redpath
- ACES; Department of Biological Sciences; University of Aberdeen; Zoology Building Tillydrone Av. Aberdeen AB24 2TZ UK
| | - Mohammed Zeineddine
- ACES; Department of Biological Sciences; University of Aberdeen; Zoology Building Tillydrone Av. Aberdeen AB24 2TZ UK
| | - François Mougeot
- EEZA-CSIC; La Cañada de San Urbano; 04120 Almeria Spain
- IREC (CSIC-UCLM-JCCM); Ronda de Toledo s/n 13005 Ciuada Real Spain
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19
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20
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Nichols HJ, Jordan NR, Jamie GA, Cant MA, Hoffman JI. Fine-scale spatiotemporal patterns of genetic variation reflect budding dispersal coupled with strong natal philopatry in a cooperatively breeding mammal. Mol Ecol 2012; 21:5348-62. [DOI: 10.1111/mec.12015] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 07/07/2012] [Accepted: 07/17/2012] [Indexed: 11/27/2022]
Affiliation(s)
- Hazel J. Nichols
- Department of Zoology; University of Cambridge; Cambridge; CB2 3EJ; UK
| | - Neil R. Jordan
- Department of Zoology; University of Cambridge; Cambridge; CB2 3EJ; UK
| | - Gabriel A. Jamie
- Department of Zoology; University of Cambridge; Cambridge; CB2 3EJ; UK
| | - Michael A. Cant
- Centre for Ecology and Conservation; University of Exeter; Cornwall Campus; Cornwall; TR10 9EZ; UK
| | - Joseph I. Hoffman
- Department of Animal Behaviour; University of Bielefeld; Postfach 100131; Bielefeld; 33501; Germany
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21
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Vergara P, Redpath SM, Martínez-Padilla J, Mougeot F. Environmental conditions influence red grouse ornamentation at a population level. Biol J Linn Soc Lond 2012. [DOI: 10.1111/j.1095-8312.2012.01974.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pablo Vergara
- School of Biological Sciences; University of Aberdeen; Tillydrone Av.; Aberdeen; AB24 2TZ; UK
| | - Stephen M. Redpath
- School of Biological Sciences; University of Aberdeen & The James Hutton Institute; Aberdeen Centre for Environmental Sustainability (ACES); Tillydrone Av.; Aberdeen; AB24 2TZ; UK
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22
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Quirici V, Palma M, Sobrero R, Faugeron S, Ebensperger LA. Relatedness does not predict vigilance in a population of the social rodent Octodon degus. Acta Ethol 2012. [DOI: 10.1007/s10211-012-0131-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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23
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Webster LMI, Paterson S, Mougeot F, Martinez-Padilla J, Piertney SB. Transcriptomic response of red grouse to gastro-intestinal nematode parasites and testosterone: implications for population dynamics. Mol Ecol 2010; 20:920-31. [PMID: 21073676 DOI: 10.1111/j.1365-294x.2010.04906.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
A central issue in ecology is in understanding the relative influences of intrinsic and extrinsic effects on population regulation. Previous studies on the cyclic population dynamics of red grouse (Lagopus lagopus scoticus) have emphasized the destabilizing effects of either nematode parasites or territorial behaviour and aggression. The potential interacting effects of these processes, mediated through density-dependent, environmentally induced alterations of host immunocompetence influencing susceptibility to parasites have not been considered. Male red grouse at high density are more aggressive, associated with increased testosterone, which potentially could lead to reduced immunocompetence at a stage when parasites are most prevalent. This could depress individual condition, breeding performance and survival and thus drive or contribute to overall reductions in population size. Here, we characterize the transcriptomic response of grouse to nematode parasite infection and investigate how this is subsequently affected by testosterone, using a microarray approach contrasting red grouse with high and low parasite load at both high and low testosterone titre. A suite of 52 transcripts showed a significant level of up-regulation to either chronic parasite load or experimental parasite infection. Of these, 51 (98%) showed a reduced level of expression under conditions of high parasite load and high testosterone. The genes up-regulated by parasites and then down-regulated at high testosterone titre were not necessarily associated with immune response, as might be intuitively expected. The results are discussed in relation to the fitness and condition of individual red grouse and factors influencing the regulation of abundance in natural populations.
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Affiliation(s)
- L M I Webster
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 2TZ, UK
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24
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Pilot M, Dabrowski MJ, Jancewicz E, Schtickzelle N, Gliwicz J. Temporally stable genetic variability and dynamic kinship structure in a fluctuating population of the root vole Microtus oeconomus. Mol Ecol 2010; 19:2800-12. [PMID: 20561198 DOI: 10.1111/j.1365-294x.2010.04692.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Genetic variability, kin structure and demography of a population are mutually dependent. Population genetic theory predicts that under demographically stable conditions, neutral genetic variability reaches equilibrium between gene flow and drift. However, density fluctuations and non-random mating, resulting e.g. from kin clustering, may lead to changes in genetic composition over time. Theoretical models also predict that changes in kin structure may affect aggression level and recruitment, leading to density fluctuations. These predictions have been rarely tested in natural populations. The aim of this study was to analyse changes in genetic variability and kin structure in a local population of the root vole (Microtus oeconomus) that underwent a fourfold change in mean density over a 6-year period. Intensive live-trapping resulted in sampling 88% of individuals present in the study area, as estimated from mark-recapture data. Based on 642 individual genotypes at 20 microsatellite loci, we compared genetic variability and kin structure of this population between consecutive years. We found that immigration was negatively correlated with density, while the number of kin groups was positively correlated with density. This is consistent with theoretical predictions that changes in kin structure play an important role in population fluctuations. Despite the changes in density and kin structure, there was no genetic differentiation between years. Population-level genetic diversity measures did not significantly vary in time and remained relatively high (H(E) range: 0.72-0.78). These results show that a population that undergoes significant demographic and social changes may maintain high genetic variability and stable genetic composition.
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Affiliation(s)
- Małgorzata Pilot
- Museum and Institute of Zoology, Polish Academy of Sciences, Wilcza 64, 00-679 Warsaw, Poland.
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25
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Hatchwell BJ. Cryptic Kin Selection: Kin Structure in Vertebrate Populations and Opportunities for Kin-Directed Cooperation. Ethology 2010. [DOI: 10.1111/j.1439-0310.2009.01732.x] [Citation(s) in RCA: 91] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Hatchwell BJ. The evolution of cooperative breeding in birds: kinship, dispersal and life history. Philos Trans R Soc Lond B Biol Sci 2009; 364:3217-27. [PMID: 19805429 PMCID: PMC2781872 DOI: 10.1098/rstb.2009.0109] [Citation(s) in RCA: 185] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The evolution of cooperation among animals has posed a major problem for evolutionary biologists, and despite decades of research into avian cooperative breeding systems, many questions about the evolution of their societies remain unresolved. A review of the kin structure of avian societies shows that a large majority live in kin-based groups. This is consistent with the proposed evolutionary routes to cooperative breeding via delayed dispersal leading to family formation, or limited dispersal leading to kin neighbourhoods. Hypotheses proposed to explain the evolution of cooperative breeding systems have focused on the role of population viscosity, induced by ecological/demographic constraints or benefits of philopatry, in generating this kin structure. However, comparative analyses have failed to generate robust predictions about the nature of those constraints, nor differentiated between the viscosity of social and non-social populations, except at a coarse level. I consider deficiencies in our understanding of how avian dispersal strategies differ between social and non-social species, and suggest that research has focused too narrowly on population viscosity and that a broader perspective that encompasses life history and demographic processes may provide fresh insights into the evolution of avian societies.
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Affiliation(s)
- Ben J Hatchwell
- Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN, UK.
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LEE JINWON, JANG BYOUNGSOON, DAWSON DEBORAHA, BURKE TERRY, HATCHWELL BENJ. Fine-scale genetic structure and its consequence in breeding aggregations of a passerine bird. Mol Ecol 2009; 18:2728-39. [DOI: 10.1111/j.1365-294x.2009.04228.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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LEBIGRE C, ALATALO RV, FORSS HE, SIITARI H. Low levels of relatedness on black grouse leks despite male philopatry. Mol Ecol 2008; 17:4512-21. [DOI: 10.1111/j.1365-294x.2008.03926.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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