Intraspecific variation in crayfish behavioral traits affects leaf litter breakdown in streams

Although intraspecific trait variation is increasingly recognized as affecting ecosystem processes, few studies have examined the ecological significance of among-population variation in behavioral traits in natural ecosystems. In freshwater habitats, crayfish are consumers that can influence ecosystem structure (e.g., macroinvertebrate communities) and function (e.g., leaf litter breakdown). To test whether crayfish behavioral traits (activity, boldness, and foraging voracity) are major contributors of leaf litter breakdown rates in the field, we collected rusty crayfish (Faxonius rusticus) from eight streams across the midwestern USA and measured behaviors using laboratory assays. At the same streams, we measured breakdown rates of leaf packs that were accessible or inaccessible to crayfish. Our results provide evidence that among-population variation in crayfish boldness and foraging voracity was a strong predictor of leaf litter breakdown rates, even after accounting for commonly appreciated environmental drivers (water temperature and human land use). Our results suggest that less bold rusty populations (i.e., emerged from shelter more slowly) had greater direct impacts on leaf litter breakdown than bold populations (P = 0.001, r2 = 0.85), potentially because leaf packs can be both a shelter and food resource to crayfish. Additionally, we found that foraging voracity was negatively related to breakdown rates in leaf packs that were inaccessible to crayfish (P = 0.025, r2 = 0.60), potentially due to a trophic cascade from crayfish preying on other invertebrates that consume leaf litter. Overall, our results add to the growing evidence that trait variation in animals may be important for understanding freshwater ecosystem functioning.

Sex-dependent increase of movement activity in the freshwater isopod Asellus aquaticus following adaptation to a predator-free cave habitat

Populations experiencing negligible predation pressure are expected to evolve higher behavioral activity. However, when sexes have different expected benefits from high activity, the adaptive shift is expected to be sex-specific. Here, we compared movement activity of one cave (lack of predation) and three adjacent surface (high and diverse predation) populations of Asellus aquaticus, a freshwater isopod known for its independent colonization of several caves across Europe. We predicted 1) higher activity in cave than in surface populations, with 2) the difference being more pronounced in males as they are known for active mate searching behavior, while females are not. Activity was assessed both in the presence and absence of light. Our results supported both predictions: movement activity was higher in the cave than in the surface populations, particularly in males. Relaxed predation pressure in the cave-adapted population is most likely the main selective factor behind increased behavioral activity, but we also showed that the extent of increase is sex-specific.

Relaxed risk of predation drives parallel evolution of stickleback behavior

The occurrence of similar phenotypes in multiple independent populations derived from common ancestral conditions (viz. parallel evolution) is a testimony of evolution by natural selection. Parallel evolution implies that populations share a common phenotypic response to a common selection pressure associated with habitat similarity. Examples of parallel evolution at genetic and phenotypic levels are fairly common, but the driving selective agents often remain elusive. Similarly, the role of phenotypic plasticity in facilitating early stages of parallel evolution is unclear. We investigated whether the relaxation of predation pressure associated with the colonization of freshwater ponds by nine-spined sticklebacks (Pungitius pungitius) likely explains the divergence in complex behaviors between marine and pond populations, and whether this divergence is parallel. Using laboratory-raised individuals exposed to different levels of perceived predation risk, we calculated vectors of phenotypic divergence for four behavioral traits between habitats and predation risk treatments. We found a significant correlation between the directions of evolutionary divergence and phenotypic plasticity, suggesting that divergence in behavior between habitats is aligned with the response to relaxation of predation pressure. Finally, we show alignment across multiple pairs of populations, and that relaxation of predation pressure has likely driven parallel evolution of behavior in this species.

Food preference and food type innovation of surface- vs. cave-dwelling waterlouse (Asellus aquaticus) after 60 000 years of isolation

Abstract

Behavioural innovativeness is important for colonising new habitats; however, it is also costly. Along the colonisation event of a simple, stable and isolated habitat offering only new food sources, one could hypothesize that the colonising individuals are more innovative than the average in their source population, showing preference to the new resource, while after colonisation, the adapted population will lose its innovativeness and become specialised to the new resource. To test this hypothesis, we compared food preference and food type innovation of a cave-dwelling waterlouse (Asellus aquaticus) population (genetically isolated for at least 60 000 years) to three surface-dwelling populations, also sampling individuals that have recently entered the cave (‘colonists’). In the cave, the only food sources are endogenous bacterial mats, while surface populations feed on various living and dead plant material together with their fungal and bacterial overgrow. We assayed all populations with the familiar and unfamiliar food types from the natural habitats and two novel food types not occurring in the natural habitats of the species. We found that all populations preferred surface to cave food and consumed the unnatural novel food types. Surface populations avoided cave food and colonists spent the most time with feeding on surface food. We conclude that the cave population maintained its preference for surface food and did not lose its food type innovativeness. We suggest that adapting to the special cave food was a major challenge in colonising the cave.

Significance statement

Behavioural innovativeness is a key trait for adapting to environmental changes or to colonise new habitats. However, it has developmental and maintenance costs due to the high energy need of the necessary sensory and neural organs. Therefore, we asked whether behavioural innovativeness decreases after colonising an isolated, stable and highly specialised habitat. By comparing food type innovativeness of surface-dwelling populations of waterlouse (Asellus aquaticus) to a population that has colonised a cave at least 60 000 years ago, we found that the high innovativeness towards unnatural food was retained in the cave population. Further, all populations preferred surface food (decaying leaves), with surface populations almost completely avoiding cave food (endogenous bacteria mats). We suggest that (i) food type innovativeness is evolutionary rigid in our system and (ii) the cave food was rather an obstacle against than a trigger of cave colonisation.

Gregariousness and intraspecific aggression in Iberian bullfinches (Pyrrhula pyrrhula iberiae) throughout the year

This study provides novel information about gregariousness and intraspecific aggression in Iberian bullfinches (Pyrrhula pyrrhula iberiae) in northwestern Spain. Small monospecific parties never exceeding 10 individuals were seen throughout the year, larger in winter on average. Males considerably outnumbered females within the groups. Adult flocks were frequent only in winter. In spring, many of the adult groups were mixed-sex assemblages composed of pairs plus supernumerary males. Sightings of juvenile groups, up to seven individuals, were common in summer–autumn. The vigilance role in mixed-sex assemblages, including pairs, appeared to be the responsibility of males based on sex-specific vigilance rates. The highest frequency of aggressive encounters, mainly male against male, occurred during the breeding season, associated with mate defence. Females attacked males, not the contrary, which supports reversed sexual dominance in bullfinches. Gregariousness probably acted as an anti-predatory and foraging strategy.

Natural and anthropogenic sources of habitat variation influence exploration behaviour, stress response, and brain morphology in a coastal fish

Evolutionary ecology aims to better understand how ecologically important traits respond to environmental heterogeneity. Environments vary both naturally and as a result of human activities, and investigations that simultaneously consider how natural and human-induced environmental variation affect diverse trait types grow increasingly important as human activities drive species endangerment. Here, we examined how habitat fragmentation and structural habitat complexity affect disparate trait types in Bahamas mosquitofish Gambusia hubbsi inhabiting tidal creeks. We tested a priori predictions for how these factors might influence exploratory behaviour, stress reactivity and brain anatomy. We examined approximately 350 adult Bahamas mosquitofish from seven tidal-creek populations across Andros Island, The Bahamas that varied in both human-caused fragmentation (three fragmented and four unfragmented) and natural habitat complexity (e.g. fivefold variation in rock habitat). Populations that had experienced severe human-induced fragmentation, and thus restriction of tidal exchange from the ocean, exhibited greater exploration of a novel environment, stronger physiological stress responses to a mildly stressful event and smaller telencephala (relative to body size). These changes matched adaptive predictions based mostly on (a) reduced chronic predation risk and (b) decreased demands for navigating tidally dynamic habitats. Populations from sites with greater structural habitat complexity showed a higher propensity for exploration and a relatively larger optic tectum and cerebellum. These patterns matched adaptive predictions related to increased demands for navigating complex environments. Our findings demonstrate environmental variation, including recent anthropogenic impacts (<50 years), can significantly affect complex, ecologically important traits. Yet trait-specific patterns may not be easily predicted, as we found strong support for only six of 12 predictions. Our results further highlight the utility of simultaneously quantifying multiple environmental factors-for example had we failed to account for habitat complexity, we would not have detected the effects of fragmentation on exploratory behaviours. These responses, and their ecological consequences, may be complex: rapid and adaptive phenotypic responses to anthropogenic impacts can facilitate persistence in human-altered environments, but may come at a cost of population vulnerability if ecological restoration was to occur without consideration of the altered traits.

A brain and a head for a different habitat: Size variation in four morphs of Arctic charr (Salvelinus alpinus (L.)) in a deep oligotrophic lake

Adaptive radiation is the diversification of species to different ecological niches and has repeatedly occurred in different salmonid fish of postglacial lakes. In Lake Tinnsjøen, one of the largest and deepest lakes in Norway, the salmonid fish, Arctic charr (Salvelinus alpinus (L.)), has likely radiated within 9,700 years after deglaciation into ecologically and genetically segregated Piscivore, Planktivore, Dwarf, and Abyssal morphs in the pelagial, littoral, shallow-moderate profundal, and deep-profundal habitats. We compared trait variation in the size of the head, the eye and olfactory organs, as well as the volumes of five brain regions of these four Arctic charr morphs. We hypothesised that specific habitat characteristics have promoted divergent body, head, and brain sizes related to utilized depth differing in environmental constraints (e.g., light, oxygen, pressure, temperature, and food quality). The most important ecomorphological variables differentiating morphs were eye area, habitat, and number of lamellae. The Abyssal morph living in the deepest areas of the lake had the smallest brain region volumes, head, and eye size. Comparing the olfactory bulb with the optic tectum in size, it was larger in the Abyssal morph than in the Piscivore morph. The Piscivore and Planktivore morphs that use more illuminated habitats have the largest optic tectum volume, followed by the Dwarf. The observed differences in body size and sensory capacities in terms of vision and olfaction in shallow and deepwater morphs likely relates to foraging and mating habitats in Lake Tinnsjøen. Further seasonal and experimental studies of brain volume in polymorphic species are needed to test the role of plasticity and adaptive evolution behind the observed differences.

Intraspecific variation in behaviour and ecology in a territorial agamid, Ctenophorus fionni

Intraspecific variation as a way to explore factors affecting the evolution of species traits in natural environments is well documented, and also important in the context of preserving biodiversity. In this study, we investigated the extent of behavioural, morphological and ecological variation in the peninsula dragon (Ctenophorus fionni), an endemic Australian agamid that displays extensive variation in colour across three allopatric populations. The aims of the study were to quantify variation across the different populations in terms of the environment, morphometric characteristics and behaviour. We found population level differences in habitat structure and encounter rates. Adult body size of C. fionni, as well as a range of morphometric traits, differed between populations, as well as the frequency of social interactions, which appears to be related to population density and abundance. Analysis of communicative signals showed differences between the southern and central populations, which appear consistent with variations in response to environmental differences between study sites. The findings of the present study, coupled with previous work examining colour variation in this species, show that the three populations of C. fionni have likely undergone substantial differentiation, and would make an interesting study system to explore trait variation in more detail.

Impact, recovery and carryover effect of Roundup® on predator recognition in common spiny loach, Lepidocephalichthys thermalis

Understanding the negative impact of a variety of environmental contaminants on aquatic animals is essential to curb biodiversity loss and stop degradation of ecological functions. Excessive and unrestricted use of pesticides is the most serious threat to aquatic animals including amphibians and fishes. Among the known pesticides, glyphosate based formulations have been shown to have lethal effects on many aquatic organisms. However, negative effects of pesticides on crucial ecological interactions such as prey-predator interactions are relatively unknown from tropics. In many aquatic organisms, recognition of predators is based on odor signatures; and therefore any anthropogenic alteration in water chemistry has the potential to impair recognition and learning of predators. Through a series of behavioral experiments we evaluated the effect of glyphosate based herbicide (Roundup®) on the antipredator behavior of common spiny loach, Lepidocephalichthys thermalis to understand the effects of pesticide-exposure on recognition of conspecific alarm cues, and associative learning to avoid predation. We exposed common spiny loach (for 3 h or 15 days) to sub-lethal concentration (0.5 mg a.e./L) of Roundup® and subsequently with conspecific alarm cues, signaling the proximity of a predator. Unexposed prey fish showed a significant reduction in activity level in response to conspecific alarm cues. Whereas such alarm response was not observed in prey fish that were exposed to Roundup® either for 3 h or 15 days. Such lack of response could be associated with alteration of olfactory function in prey individuals. However, this inability to detect the conspecific alarm cues was found to be transient and exposed fish recovered within 2 days. In subsequent experiments, we showed that Roundup® deactivates the conspecific alarm cues thus making them unavailable for prey to evoke the response. Furthermore, Roundup® mediated degradation of conspecific alarm cues and diminished the associative learning necessary for detection of the invasive/unknown/novel predators. Overall, due to the worldwide occurrence of glyphosate in water bodies, glyphosate mediated behavioral suppression exposes the prey animals to a considerable risk of predation, both by native and non-native predators.

Predator stress decreases standard metabolic rate and growth in juvenile crucian carp under changing food availability

Animals adapt to the challenges of fluctuations in predator risk and food availability in their natural habitats. Phenotypic plasticity allows animals to handle environmental changes. However, the patterns of flexibility in metabolic rates and its ecological consequences under different predator stress and food availability conditions are poorly understood. Here, we used crucial carp (Carassius auratus) as a prey species and northern snakehead (Channa argus) as a predator to test whether predator stress influences metabolism and growth, and alters the link between flexibility in metabolic rate and its ecological consequences (e.g., growth) in crucial carp. The experiment was carried out under the conditions of predator stress (with or without a predator) and three food availabilities (satiation feeding 1 time per day, low food availability; 2 times per day, intermediate food availability; and 3 times per day, high food availability) for 3 weeks. After 21 days of feeding, the final body mass and body length in the two treatments increased compared to the initial values in all three food availabilities. The feeding intake (FI) and specific growth rate (SGR) of the two treatments increased with increasing food availability. The control treatment had a higher FI and SGR than the predator stress treatment in all three food availabilities. The feeding efficiency (FE) of the two treatments was higher at the high and intermediate food availabilities than at the low food availability. However, no effect of predator stress on FE was detected. The final values of original or standardized SMR were higher in the control treatment than the predator stress treatment at the intermediate and high food availabilities. The changes in SMR (ΔSMR) were higher in the control treatment than in the predator stress treatment. The positive correlation between the ΔSMR and SGR was found in the intermediate food availability in the predator stress treatment, suggesting that individuals with a higher flexibility in SMR had a larger growth rate and vice versa, but this relationship was dependent on food availability. Our results suggest that predator stress decreased maintenance metabolism, feeding and growth of juvenile crucial carp irrespective of food availability. Predator stress does not alter the growth advantages conferred by the metabolic plasticity of the fish under changing food availability.

Brain size predicts behavioural plasticity in guppies (Poecilia reticulata): An experiment

Understanding how animal personality (consistent between-individual behavioural differences) arises has become a central topic in behavioural sciences. This endeavour is complicated by the fact that not only the mean behaviour of individuals (behavioural type) but also the strength of their reaction to environmental change (behavioural plasticity) varies consistently. Personality and cognitive abilities are linked, and we suggest that behavioural plasticity could also be explained by differences in brain size (a proxy for cognitive abilities), since accurate decisions are likely essential to make behavioural plasticity beneficial. We test this idea in guppies (Poecilia reticulata), artificially selected for large and small brain size, which show clear cognitive differences between selection lines. To test whether those lines differed in behavioural plasticity, we reared them in groups in structurally enriched environments and then placed adults individually into empty tanks, where we presented them daily with visual predator cues and monitored their behaviour for 20 days with video-aided motion tracking. We found that individuals differed consistently in activity and risk-taking, as well as in behavioural plasticity. In activity, only the large-brained lines demonstrated habituation (increased activity) to the new environment, whereas in risk-taking, we found sensitization (decreased risk-taking) in both brain size lines. We conclude that brain size, potentially via increasing cognitive abilities, may increase behavioural plasticity, which in turn can improve habituation to novel environments. However, the effects seem to be behaviour-specific. Our results suggest that brain size likely explains some of the variation in behavioural plasticity found at the intraspecific level.

Competition for food in 2 populations of a wild-caught fish

Aggressive behavior when competing for resources is expected to increase as the ratio of competitors-to-resource ratio (CRR) units increases. Females are expected to be more aggressive than males when competing for food when body size is more strongly related to reproductive success in females than in males, whereas aggression is predicted to decrease under high ambient predation risk by natural selection. Under the risk allocation model, however, individuals under high ambient predation risk are expected to be more aggressive, and forage more in the absence of imminent risk than their low risk counterparts. An interaction between adult sex ratio (i.e., adult males/females), ambient predation risk (high vs. low), and sex on intrasexual competition for mates in Trinidadian guppies Poecilia reticulata has been shown. The interaction suggested an increase in aggression rates as CRR increased, except for males from the high predation population. To compare the patterns of competition for food versus mates, we replicated this study by using food patches. We allowed 4 male or 4 female guppies from high and low predation populations to compete for 5, 3, or 1 food patches. The foraging rate was higher in a high rather than low ambient predation risk population. Surprisingly, CRR, sex, and population of origin had no effect on aggression rates. Despite other environmental differences between the 2 populations, the effect of ambient predation risk may be a likely explanation for differences in foraging rates. These results highlight the importance for individuals to secure food despite the cost of competition and predation.

Population, sex and body size: determinants of behavioural variations and behavioural correlations among wild zebrafish Danio rerio

This study (1) investigated variation among populations and the effects of sex and body size on boldness, activity and shoal-association tendency among wild zebrafish, and (2) tested for existence of correlations between behaviours, controlling for sex and body size. Individuals across four natural populations were tested for general activity in a novel situation, number of predator inspections undertaken and tendency to associate with a conspecific shoal in the presence of predators. Results showed a significant effect of population on boldness with a population from high-predation habitat being bolder than populations from low-predation habitats. Males showed significantly higher tendencies than females to associate with a conspecific shoal in the presence of predators. Further, a negative relationship was found between activity and boldness only within two low-predation populations. Individual body size had a strong effect on the activity-boldness relationship within the low-predation population from flowing water habitat. Smaller fish were bolder and less active while larger fish were more cautious and active. Overall, the results indicated that while population-level behavioural responses might be shaped by predation pressure, state-dependent factors could determine behavioural correlations among individuals within populations.

Differences in the metabolic response to temperature acclimation in nine-spined stickleback (Pungitius pungitius) populations from contrasting thermal environments

Metabolic responses to temperature changes are crucial for maintaining the energy balance of an individual under seasonal temperature fluctuations. To understand how such responses differ in recently isolated populations (<11,000 years), we studied four Baltic populations of the nine-spined stickleback (Pungitius pungitius L.) from coastal locations (seasonal temperature range, 0-29°C) and from colder, more thermally stable spring-fed ponds (1-19°C). Salinity and predation pressure also differed between these locations. We acclimatized wild-caught fish to 6, 11, and 19°C in common garden conditions for 4-6 months and determined their aerobic scope and hepatosomatic index (HSI). The freshwater fish from the colder (2-14°C), predator-free pond population exhibited complete temperature compensation for their aerobic scope, whereas the coastal populations underwent metabolic rate reduction during the cold treatment. Coastal populations had higher HSI than the colder pond population at all temperatures, with cold acclimation accentuating this effect. The metabolic rates and HSI for freshwater fish from the pond with higher predation pressure were more similar to those of the coastal ones. Our results suggest that ontogenic effects and/or genetic differentiation are responsible for differential energy storage and metabolic responses between these populations. This work demonstrates the metabolic versatility of the nine-spined stickleback and the pertinence of an energetic framework to better understand potential local adaptations. It also demonstrates that instead of using a single acclimation temperature thermal reaction norms should be compared when studying individuals originating from different thermal environments in a common garden setting.

Genome-wide linkage disequilibrium in nine-spined stickleback populations

Variation in the extent and magnitude of genome-wide linkage disequilibrium (LD) among populations residing in different habitats has seldom been studied in wild vertebrates. We used a total of 109 microsatellite markers to quantify the level and patterns of genome-wide LD in 13 Fennoscandian nine-spined stickleback (Pungitius pungitius) populations from four (viz. marine, lake, pond, and river) different habitat types. In general, high magnitude (D' > 0.5) of LD was found both in freshwater and marine populations, and the magnitude of LD was significantly greater in inland freshwater than in marine populations. Interestingly, three coastal freshwater populations located in close geographic proximity to the marine populations exhibited similar LD patterns and genetic diversity as their marine neighbors. The greater levels of LD in inland freshwater compared with marine and costal freshwater populations can be explained in terms of their contrasting demographic histories: founder events, long-term isolation, small effective sizes, and population bottlenecks are factors likely to have contributed to the high levels of LD in the inland freshwater populations. In general, these findings shed new light on the patterns and extent of variation in genome-wide LD, as well as the ecological and evolutionary factors driving them.

Extensive behavioural divergence following colonisation of the freshwater environment in threespine sticklebacks

Colonisation of novel environments means facing new ecological challenges often resulting in the evolution of striking divergence in phenotypes. However, little is known about behavioural divergence following colonisation, despite the predicted importance of the role of behavioural phenotype-environment associations in adaptive divergence. We studied the threespine stickleback (Gasterosteus aculeatus), a model system for postglacial colonisation of freshwater habitats largely differing in ecological conditions from the ones faced by the descendants of the marine ancestor. We found that common-environment reared freshwater juveniles were less social, more active and more aggressive than their marine counterparts. This behavioural divergence could represent the result of natural selection that acted on individuals following freshwater colonisation, with predation as a key selection agent. Alternatively, the behavioural profile of freshwater juveniles could represent the characteristics of individuals that preferentially invaded freshwater after the glacial retreat, drawn from the standing variation present in the marine population.

QTL analysis of behavior in nine-spined sticklebacks (Pungitius pungitius)

The genetic architecture of behavioral traits is yet relatively poorly understood in most non-model organisms. Using an F2-intercross (n = 283 offspring) between behaviorally divergent nine-spined stickleback (Pungitius pungitius) populations, we tested for and explored the genetic basis of different behavioral traits with the aid of quantitative trait locus (QTL) analyses based on 226 microsatellite markers. The behaviors were analyzed both separately (viz. feeding activity, risk-taking and exploration) and combined in order to map composite behavioral type. Two significant QTL-explaining on average 6 % of the phenotypic variance-were detected for composite behavioral type on the experiment-wide level, located on linkage groups 3 and 8. In addition, several suggestive QTL located on six other linkage groups were detected on the chromosome-wide level. Apart from providing evidence for the genetic basis of behavioral variation, the results provide a good starting point for finer-scale analyses of genetic factors influencing behavioral variation in the nine-spined stickleback.

The adaptive significance of population differentiation in offspring size of the least killifish, Heterandria formosa

We tested the hypothesis that density-dependent competition influences the evolution of offspring size. We studied two populations of the least killifish (Heterandria formosa) that differ dramatically in population density; these populations are genetically differentiated for offspring size, and females from both populations produce larger offspring when they experience higher social densities. To look at the influences of population of origin and relative body size on competitive ability, we held females from the high-density population at two different densities to create large and small offspring with the same genetic background. We measured the competitive ability of those offspring in mesocosms that contained either pure or mixed population treatments at either high or low density. High density increased competition, which was most evident in greatly reduced individual growth rates. Larger offspring from the high-density population significantly delayed the onset of maturity of fish from the low-density population. From our results, we infer that competitive conditions in nature have contributed to the evolution of genetically based interpopulation differences in offspring size as well as plasticity in offspring size in response to conspecific density.

Optimal growth strategies under divergent predation pressure

The conditions leading to gigantism in nine-spined sticklebacks Pungitius pungitius were analysed by modelling fish growth with the von Bertalanffy model searching for the optimal strategy when the model's growth constant and asymptotic fish size parameters are negatively related to each other. Predator-related mortality was modelled through the increased risk of death during active foraging. The model was parameterized with empirical growth data of fish from four different populations and analysed for optimal growth strategy at different mortality levels. The growth constant and asymptotic fish size were negatively related in most populations. Optimal fish size, fitness and life span decreased with predator-induced mortality. At low mortality, the fitness of pond populations was higher than that of sea populations. The differences disappeared at intermediate mortalities, and sea populations had slightly higher fitness at extremely high mortalities. In the scenario where all populations mature at the same age, the pond populations perform better at low mortalities and the sea populations at high mortalities. It is concluded that a trade-off between growth constant and asymptotic fish size, together with different mortality rates, can explain a significant proportion of body size differentiation between populations. In the present case, it is a sufficient explanation of gigantism in pond P. pungitius.

Spectral tuning by selective chromophore uptake in rods and cones of eight populations of nine-spined stickleback (Pungitius pungitius)

The visual pigments of rods and cones were studied in eight Fennoscandian populations of nine-spined stickleback (Pungitius pungitius). The wavelength of maximum absorbance of the rod pigment (λ(max)) varied between populations from 504 to 530 nm. Gene sequencing showed that the rod opsins of all populations were identical in amino acid composition, implying that the differences were due to varying proportions of chromophores A1 and A2. Four spectral classes of cones were found (two S-cones, M-cones and L-cones), correlating with the four classes of vertebrate cone pigments. For quantitative estimation of chromophore proportions, we considered mainly rods and M-cones. In four populations, spectra of both photoreceptor types indicated A2 dominance (population mean λ(max)=525-530 nm for rods and 535-544 nm for M-cones). In the four remaining populations, however, rod spectra (mean λ(max)=504-511 nm) indicated strong A1 dominance, whereas M-cone spectra (mean λ(max)=519-534 nm) suggested substantial fractions of A2. Quantitative analysis of spectra by three methods confirmed that rods and cones in these populations use significantly different chromophore proportions. The outcome is a shift of M-cone spectra towards longer wavelengths and a better match to the photic environment (light spectra peaking >560 nm in all the habitats) than would result from the chromophore proportions of the rods. Chromophore content was also observed to vary partly independently in M- and L-cones with potential consequences for colour discrimination. This is the first demonstration that selective processing of chromophore in rods and cones, and in different cone types, may be ecologically relevant.

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

In recent years, the explosion of affordable next generation sequencing technology has provided an unprecedented opportunity to conduct genome-wide studies of adaptive evolution in organisms previously lacking extensive genomic resources. Here, we characterize genome-wide patterns of variability and differentiation using pooled DNA from eight populations of the nine-spined stickleback (Pungitius pungitius L.) from marine, lake and pond environments. We developed a novel genome complexity reduction protocol, defined as paired-end double restriction-site-associated DNA (PE dRAD), to maximize read coverage at sequenced locations. This allowed us to identify over 114,000 short consensus sequences and 15,000 SNPs throughout the genome. A total of 6834 SNPs mapped to a single position on the related three-spined stickleback genome, allowing the detection of genomic regions affected by divergent and balancing selection, both between species and between freshwater and marine populations of the nine-spined stickleback. Gene ontology analysis revealed 15 genomic regions with elevated diversity, enriched for genes involved in functions including immunity, chemical stimulus response, lipid metabolism and signalling pathways. Comparisons of marine and freshwater populations identified nine regions with elevated differentiation related to kidney development, immunity and MAP kinase pathways. In addition, our analysis revealed that a large proportion of the identified SNPs mapping to LG XII is likely to represent alternative alleles from divergent X and Y chromosomes, rather than true autosomal markers following Mendelian segregation. Our work demonstrates how population-wide sequencing and combining inter- and intra-specific RAD analysis can uncover genome-wide patterns of differentiation and adaptations in a non-model species.

Brain development and predation: plastic responses depend on evolutionary history

Although the brain is known to be a very plastic organ, the effects of common ecological interactions like predation or competition on brain development have remained largely unexplored. We reared nine-spined sticklebacks (Pungitius pungitius) from two coastal marine (predation-adapted) and two isolated pond (competition-adapted) populations in a factorial experiment, manipulating perceived predatory risk and food supply to see (i) if the treatments affected brain development and (ii) if there was population differentiation in the response to treatments. We detected differences in plasticity of the bulbus olfactorius (chemosensory centre) between habitats: marine fish were not plastic, whereas pond fish had larger bulbi olfactorii in the presence of perceived predation. Marine fish had larger bulbus olfactorius overall. Irrespective of population origin, the hypothalamus was smaller in the presence of perceived predatory risk. Our results demonstrate that perceived predation risk can influence brain development, and that the effect of an environmental factor on brain development may depend on the evolutionary history of a given population in respect to this environmental factor.