Oxidation of sulfhydryl groups in lactate dehydrogenase under high hydrostatic pressure

Prediction of the maximum temperature for life based on the stability of metabolites to decomposition in water

The components of life must survive in a cell long enough to perform their function in that cell. Because the rate of attack by water increases with temperature, we can, in principle, predict a maximum temperature above which an active terrestrial metabolism cannot function by analysis of the decomposition rates of the components of life, and comparison of those rates with the metabolites' minimum metabolic half-lives. The present study is a first step in this direction, providing an analytical framework and method, and analyzing the stability of 63 small molecule metabolites based on literature data. Assuming that attack by water follows a first order rate equation, we extracted decomposition rate constants from literature data and estimated their statistical reliability. The resulting rate equations were then used to give a measure of confidence in the half-life of the metabolite concerned at different temperatures. There is little reliable data on metabolite decomposition or hydrolysis rates in the literature, the data is mostly confined to a small number of classes of chemicals, and the data available are sometimes mutually contradictory because of varying reaction conditions. However, a preliminary analysis suggests that terrestrial biochemistry is limited to environments below ~150-180 °C. We comment briefly on why pressure is likely to have a small effect on this.

A system for incubations at high gas partial pressure

High-pressure is a key feature of deep subsurface environments. High partial pressure of dissolved gasses plays an important role in microbial metabolism, because thermodynamic feasibility of many reactions depends on the concentration of reactants. For gases, this is controlled by their partial pressure, which can exceed 1 MPa at in situ conditions. Therefore, high hydrostatic pressure alone is not sufficient to recreate true deep subsurface in situ conditions, but the partial pressure of dissolved gasses has to be controlled as well. We developed an incubation system that allows for incubations at hydrostatic pressure up to 60 MPa, temperatures up to 120°C, and at high gas partial pressure. The composition and partial pressure of gasses can be manipulated during the experiment. To keep costs low, the system is mainly made from off-the-shelf components with only very few custom-made parts. A flexible and inert PVDF (polyvinylidene fluoride) incubator sleeve, which is almost impermeable for gases, holds the sample and separates it from the pressure fluid. The flexibility of the incubator sleeve allows for sub-sampling of the medium without loss of pressure. Experiments can be run in both static and flow-through mode. The incubation system described here is usable for versatile purposes, not only the incubation of microorganisms and determination of growth rates, but also for chemical degradation or extraction experiments under high gas saturation, e.g., fluid-gas-rock-interactions in relation to carbon dioxide sequestration. As an application of the system we extracted organic compounds from sub-bituminous coal using H(2)O as well as a H(2)O-CO(2) mixture at elevated temperature (90°C) and pressure (5 MPa). Subsamples were taken at different time points during the incubation and analyzed by ion chromatography. Furthermore we demonstrated the applicability of the system for studies of microbial activity, using samples from the Isis mud volcano. We could detect an increase in sulfate reduction rate upon the addition of methane to the sample.

The significance of the activity of dissolved oxygen, and other gases, enhanced by high hydrostatic pressure

The partial pressure of oxygen and other gases dissolved in water and subjected to high hydrostatic pressure is increased. Although this was established many years ago it remains a problematical phenomenon. The review deals with some of the underlying theoretical difficulties and discusses the kinetic and environmental implications of the pressure-enhanced partial pressures.

Trimethylamine oxide stabilizes teleost and mammalian lactate dehydrogenases against inactivation by hydrostatic pressure and trypsinolysis

Trimethylamine N-oxide (TMAO) is an organic osmolyte present at high levels in elasmobranchs, in which it counteracts the deleterious effects of urea on proteins, and is also accumulated by deep-living invertebrates and teleost fishes. To test the hypothesis that TMAO may compensate for the adverse effects of elevated pressure on protein structure in deep-sea species, we studied the efficacy of TMAO in preventing denaturation and enhanced proteolysis by hydrostatic pressure. TMAO was compared to a common ‘compatible’ osmolyte, glycine, using muscle-type lactate dehydrogenase (A(4)-LDH) homologs from three scorpaenid teleost fish species and from a mammal, the cow. Test conditions lasted 1 h and were: (1) no addition, (2) 250 mmol l(−)(1) TMAO and (3) 250 mmol l(−)(1) glycine, in the absence and presence of trypsin. Comparisons were made at 0. 1 and 101.3 MPa for the deeper occurring Sebastolobus altivelis, 0.1, 50.7 and 101.3 MPa for the moderate-depth congener S. alascanus, 0. 1 and 25.3 MPa for shallow-living Sebastes melanops and 0.1 and 50.7 MPa for Bos taurus. Susceptibility to denaturation was determined by the residual LDH activity. For all the species and pressures tested, 250 mmol l(−)(1) TMAO reduced trypsinolysis significantly. For all except S. altivelis, which was minimally affected by 101.3 MPa pressure, TMAO stabilized the LDH homologs and reduced pressure denaturation significantly. Glycine, in contrast, showed no ability to reduce pressure denaturation alone, and little or no ability to reduce the rate of proteolysis.

Subunit dissociation and inactivation of pyruvate kinase by hydrostatic pressure oxidation of sulfhydryl groups and ligand effects on enzyme stability

The effect of hydrostatic pressure on the stability of tetrameric rabbit muscle pyruvate kinase was investigated by enzyme activity measurements, size-exclusion chromatography, circular dichroism and fluorescence spectroscopies. Under nonreducing conditions, enzyme activity was irreversibly inhibited by increasing pressure and was completely abolished at 350 MPa. Inhibition was dependent on the concentration of pyruvate kinase, indicating that it was related to pressure-induced subunit dissociation. Size-exclusion chromatography of pressurized samples confirmed a decrease in the proportion of tetramers and an increase in monomers relative to native samples. Addition of dithiothreitol immediately following pressure release led to full recovery of both enzyme activity and of native tetramers. Furthermore, no irreversible inhibition of pyruvate kinase was observed if pressure treatment was carried out in the presence of dithiothreitol. These data suggest that pressure-dissociated monomers undergo conformational changes leading to oxidation of sulfhydryl groups, which prevents correct refolding of native tetramers on decompression. These conformational changes are relatively subtle, as indicated by the lack of significant changes in far-UV circular dichroism and intrinsic fluorescence emission spectra of previously pressurized samples. The effects of various physiological ligands on the pressure stability of pyruvate kinase were also investigated. A slight protection against inhibition was observed in the simultaneous presence of K+, Mg2+ and ADP. Both phosphoenolpyruvate and the allosteric inhibitor, phenylalanine, caused marked stabilization against pressure, suggesting significant energy coupling between binding of these ligands and stabilization of the tetramer.

Degradative covalent reactions important to protein stability

Commonly observed chemical modifications that occur in proteins during their in vitro purification, storage, and handling are discussed. Covalent modifications described include deamidation and isoaspartate formation, cleavage of peptide bonds at aspartic acid residues, cystine destruction and thiol-disulfide interchange, oxidation of cysteine and methionine residues, and the glycation and carbamylation of amino groups.

Reversible high hydrostatic pressure inactivation of phosphofructokinase from Escherichia coli

Tetrameric Escherichia coli phosphofructokinase dissociates reversibly on incubation under hydrostatic pressures of 80 MPa and above, yielding inactive dimers and monomers. The transition is dependent upon enzyme concentration and presence of ligands. The substrate, D-fructose 6-phosphate, which bridges the intersubunit interface at the active site, produces a massive stabilization to pressure, whereas ATP, which binds to only one subunit, induces only a mild stabilization. Both the positive allosteric regulator, GDP, and the negative allosteric regulator, phosphoenolpyruvate, whose binding sites lie at the other subunit interface, produce an intermediate effect. Of these ligands, only ATP increases the rate of reactivation after depressurization.

High-Pressure Equipment for Growing Methanogenic Microorganisms on Gaseous Substrates at High Temperature

High-pressure, high-temperature investigations on thermophilic microorganisms that grow on hydrogen or other gaseous substrates require instrumentation which provides sufficient substrate for cell proliferation up to 2 × 10 8 to 3 × 10 8 cells per ml under isothermal and isobaric conditions. To minimize H 2 leakage and to optimize reproducibility at high pressure and high temperature, 10-ml nickel tubes with a liquid/gas ratio of 1:2 were used in a set of autoclaves connected in series. By applying a hydraulic pump and a 2.5-kW heating device, fast changes in temperature (up to 400°C) and pressure (up to 400 MPa) can be accomplished within less than 10 min. To quantify bacterial growth, determinations of cell numbers per unit volume yielded optimum accuracy. Preliminary experiments with the thermophilic, methanogenic archaebacterium Methanococcus thermolithotrophicus showed that bacterial growth depends on both temperature and pressure. At the optimum temperature, increased hydrostatic pressure up to 50 MPa enhanced the growth yield; at a pressure of >75 MPa, cell lysis dominated. Changes in cell proliferation were accompanied by changes in morphology.

Pressure inactivation of tetrameric lactate dehydrogenase homologues of confamilial deep-living fishes

The susceptibility to inactivation by hydrostatic pressure of the tetrameric muscle-type (M4) lactate dehydrogenase homologues (LDH, EC 1.1.1.27; L-lactate: NAD+ oxidoreductase) from six confamilial macrourid fishes was compared at 4 degrees C. These marine teleost fishes occur over depths of 260 to 4815 m. The pressures necessary to half-inactivate the LDH homologues are related to the pressures which the enzymes are exposed to in vivo; higher hydrostatic pressures are required to inactivate the LDH homologues of the deeper-occurring macrourids. The resistance of the LDH homologues to inactivation by pressure is affected by protein concentration. After an hour of incubation at pressure, the percent remaining activity approaches an asymptomatic value. The inactivation of the macrourid LDH homologues by pressure was not fully reversible. Assuming that inactivation by pressure was due to dissociation of the native tetramer to monomers, apparent equilibrium constants (Keq) were calculated. Volume changes (delta V) were calculated over the range of pressures for which plots ln Keq versus pressure were linear. The delta V of dissociation values of the macrourid homologues range from -219 to -439 ml mol-1. Although the hydrostatic pressures required to inactivate the LDH homologues of the macrourid fishes are greater than those which the enzymes are exposed to in vivo, the pressure-stability of these enzymes may reflect the resistance of these enzymes to pressure-enhanced proteolysis in vivo.

Influence of cofactor pyridoxal 5'-phosphate on reversible high-pressure denaturation of isolated beta 2 dimer of tryptophan synthase bienzyme complex from Escherichia coli

High hydrostatic pressure has been shown to cause reversible dissociation of the isolated apo beta 2 dimer of tryptophan synthase from Escherichia coli into enzymatically inactive monomers [Seifert, T., Bartholmes, P., & Jaenicke, R. (1982) Biophys. Chem. 15, 1-8]. Addition of the coenzyme pyridoxal 5'-phosphate affects the structural stability, as well as the kinetics of dissociation and deactivation. The apo beta 2 dimer is deactivated faster than the holoenzyme by a factor of 10. The midpoints of the corresponding equilibrium transition curves are observed at 690 and 870 bar, respectively. As shown by hybridization of native and chemically modified beta chains, the loss of enzymatic activity is accompanied by subunit dissociation. An additional deactivating effect is produced by the pressure-induced release of the cofactor from the holoenzyme. Renaturation after decompression has been monitored by circular dichroism and intrinsic fluorescence emission. Alterations of the dichroic absorption at 222 nm reflect the recovery of the native secondary structure, while tryptophan fluorescence represents a specific probe for the native tertiary structure in the immediate neighborhood of the active center of the enzyme. By application of both methods to monitor the reconstitution of the apo beta 2 dimer, two first-order processes may be separated along the time scale. The faster phase (k1 = 1.2 X 10(-2) s-1) yields a "structured monomer" with 85% native secondary structure and the tryptophan side chain buried in its native hydrophobic environment. As indicated by sodium borohydride reduction, this intermediate is able to interact with the coenzyme pyridoxal 5'-phosphate in the correct way; however, it does not show enzymatic activity.(ABSTRACT TRUNCATED AT 250 WORDS)

High-pressure enzyme kinetics. Lactate dehydrogenase in an optical cell that allows a reaction to be started under high pressure

A newly designed optical cell allows an enzyme reaction to be started under high pressure and makes it possible to begin measurement of the reaction rate after a 'dead time' no longer than 1-2 s. This device was used to study the kinetics of lactate dehydrogenase reaction at 1 kbar. At this pressure lactate dehydrogenase from rabbit muscle exhibited a rapid deactivation in the presence of NADH if pyruvate was absent. After addition of pyruvate the reaction was initiated and proceeded at a constant rate, i.e., without loss of enzyme activity. It is suggested that pyruvate markedly increases the association constant of this tetrameric enzyme.

Reconstitution of the isolated beta2-subunit of tryptophan synthase from Escherichia coli after dissociation induced by high hydrostatic pressure. Equilibrium and kinetic studies

The isolated beta2-subunit of Escherichia coli tryptophan synthase can be reversibly dissociated into enzymically inactive monomers under high hydrostatic pressure. Deactivation at 1.5 kbar which shows a half-time of 11 min (rate constant k=10 (-3) s (-1) is paralleled by dissociation with a small lag phase of about 5 min. Pressure release leads to 95 +/- 5% recovery of specific activity and complete restoration of the hydrodynamic and spectral properties which specify the native dimer. Over the concentration range 1-100 micrograms/ml (0.02-2.3 micrograms M) the kinetics of reactivation can be fitted by one apparent first-order rate constant (k=6.5 +/- 0.6 X 10 (-4) s (-1), half-time = 17.5 min). The reconstitution of catalytic activity is paralleled by alterations in tryptophan fluorescence at 327 nm, thus presenting direct evidence for conformational changes in the direct vicinity of the active center (k1 = 1.9 X 10 (-3) s(-1), k2 = 6.5 +/- 0.6 X 10(-4) s (-1) ). On the other hand, a definite mechanism of reactivation requires the association of the refolding monomers to be included. The kinetics of dimerization have been followed via hybridization between native and chemically modified beta-chains, yielding an apparent first-order rate constant of 6.3 +/- 0.6 X 10 (-4) s (-1). As a consequence, we propose a sequential uni-uni-bimolecular mechanism, which is characterized by a minimum of two conformational changes in substantially structured monomers followed by a fast dimerization reaction to yield the active beta2-subunit.

Dissociation and aggregation of lactic dehydrogenase by high hydrostatic pressure

As shown by earlier experiments high hydrostatic pressure affects the catalytic function of lactic dehydrogenase from rabbit muscle. In the presence of substrates denaturation occurs, whereas in the absence of substrates and --SH-protecting reagents oxidation of sulfhydryl groups takes place [Schmid, G., Lüdemann, H.-D. & Jaenicke, R. (1975) Biophys. Chem. 3, 90--98; (1978) Eur. J. Biochem. 86, 219--224]. Avoiding oxidation effects by reducing conditions in the solvent medium and by chelation of heavy metal ions, the remaining high-pressure effects consist of dissociation of the native quaternary structure into subunits followed by aggregation. Both reactions are influenced by temperature and enzyme concentration. Short incubation (less than or equal to 10 min) at pH 6.0--8.5 and pressures of 0.3--1.0 kbar causes dissociation which is reversed at normal pressure. At 5 degrees C the activation volume is found to be delta V not equal to = -62 +/- 3cm3 . mol-1. Above 1.2 kbar irreversible aggregation takes place; the reaction is favoured by low temperature and decreased pH. The activation volume for the aggregation process at 5 degress C is delta V not equal to = -97 +/- 3cm3 . mol-1. The results may be described by a reaction sequence comprisign pressure-induced dissociation of the native enzyme into its subunits followed by subunit aggregation to form inactive high-molecular-weight particles.