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Xiong X, Samollow PB, Cao W, Metz R, Zhang C, Leandro AC, VandeBerg JL, Wang X. Genetic and genomic architecture in eight strains of the laboratory opossum Monodelphis domestica. G3-GENES GENOMES GENETICS 2021; 12:6423994. [PMID: 34751383 PMCID: PMC8728031 DOI: 10.1093/g3journal/jkab389] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 10/24/2021] [Indexed: 11/21/2022]
Abstract
The gray short-tailed opossum (Monodelphis domestica) is an established laboratory-bred marsupial model for biomedical research. It is a critical species for comparative genomics research, providing the pivotal phylogenetic outgroup for studies of derived vs ancestral states of genomic/epigenomic characteristics for eutherian mammal lineages. To characterize the current genetic profile of this laboratory marsupial, we examined 79 individuals from eight established laboratory strains. Double digest restriction site-associated DNA sequencing and whole-genome resequencing experiments were performed to investigate the genetic architecture in these strains. A total of 66,640 high-quality single nucleotide polymorphisms (SNPs) were identified. We analyzed SNP density, average heterozygosity, nucleotide diversity, and population differentiation parameter Fst within and between the eight strains. Principal component and population structure analysis clearly resolve the strains at the level of their ancestral founder populations, and the genetic architecture of these strains correctly reflects their breeding history. We confirmed the successful establishment of the first inbred laboratory opossum strain LSD (inbreeding coefficient F > 0.99) and a nearly inbred strain FD2M1 (0.98 < F < 0.99), each derived from a different ancestral background. These strains are suitable for various experimental protocols requiring controlled genetic backgrounds and for intercrosses and backcrosses that can generate offspring with informative SNPs for studying a variety of genetic and epigenetic processes. Together with recent advances in reproductive manipulation and CRISPR/Cas9 techniques for Monodelphis domestica, the existence of distinctive inbred strains will enable genome editing on different genetic backgrounds, greatly expanding the utility of this marsupial model for biomedical research.
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Affiliation(s)
- Xiao Xiong
- Department of Pathobiology, College of Veterinary Medicine, Auburn University, Auburn, AL 36849, USA.,School of Life Sciences and Technology, Tongji University, Shanghai 200092, China
| | - Paul B Samollow
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Wenqi Cao
- Department of Pathobiology, College of Veterinary Medicine, Auburn University, Auburn, AL 36849, USA
| | - Richard Metz
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Chao Zhang
- Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Institute of Precision Medicine, Shanghai JiaoTong University School of Medicine, Shanghai 200240, China
| | - Ana C Leandro
- South Texas Diabetes and Obesity Institute and Department of Human Genetics, School of Medicine, The University of Texas Rio Grande Valley, Brownsville, TX 78520, USA
| | - John L VandeBerg
- South Texas Diabetes and Obesity Institute and Department of Human Genetics, School of Medicine, The University of Texas Rio Grande Valley, Brownsville, TX 78520, USA
| | - Xu Wang
- Department of Pathobiology, College of Veterinary Medicine, Auburn University, Auburn, AL 36849, USA.,Alabama Agricultural Experiment Station, Auburn, AL 36849, USA.,HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
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PULMONARY LESIONS CAUSED BY THE LUNGWORM (DIDELPHOSTRONGYLUS HAYESI) IN THE OPOSSUM (DIDELPHIS VIRGINIANA) IN COLIMA, MEXICO. J Zoo Wildl Med 2017; 48:404-412. [PMID: 28749264 DOI: 10.1638/2016-0156r1.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Didelphostrongylus hayesi is an important and prevalent pulmonary nematode in the opossum ( Didelphis virginiana ). An in-depth description of the pulmonary lesions caused by this nematode is lacking. The objective of this investigation was to make a detailed account of the gross, subgross, and microscopic changes that occur in the lungs of opossums naturally infected with D. hayesi. Forty-four opossums trapped in the state of Colima, Mexico, were euthanized by an overdose of barbiturates. Following a postmortem examination, the right lung was cut from the main bronchi and placed in a Petri dish containing a saline solution for the detection and identification of live parasites. The left lung was fixed and cut serially for subgross microscopic examination and sections of lung were cut and stained for histopathologic examination. The most remarkable gross change in parasitized lungs was a poorly collapsible pulmonary parenchyma and mild emphysema. The right lung tested positive for lungworms on gross examination in 20/44, and 11/44 (25%) of the left lungs showed tan nodules on the pleural surface. Microscopically, the bronchi of 20/44 animals harbored adult and larval stages of D. hayesi (left lung), the same 20 opossums from which nematodes were grossly evident at necropsy (right lung). Adults and larvae were present in bronchi, bronchioles, and alveoli mixed with desquamated cells and many eosinophils, and to a lesser extent neutrophils, alveolar macrophages, and giant cells. Bronchi and bronchioles exhibited goblet cell hyperplasia and metaplasia respectively, and infiltration of lymphoplasmacytic cells in the interstitium and lamina propria. The tan nodules consisted of focal alveolar endogenous lipidosis, which likely resulted from parasitic airway obstruction. The lungs of 3/20 parasitized opossums also showed alveolar bronchiolization (Lambertosis). The absence of Eucoleus aerophilus or bacterial pneumonia incriminates D. hayesi as the putative cause of pulmonary lesions in these opossums.
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Moreto AO, Oliveira FD, Bertassoli BM, Assis Neto AC. Morfologia comparada do aparelho respiratório de capivaras (Hydrochoerus hydrochoeris). PESQUISA VETERINARIA BRASILEIRA 2017. [DOI: 10.1590/s0100-736x2017000300011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
RESUMO: A capivara (Hydrochoerus hydrochoeris), um roedor silvestre típico no continente Sul-americano, é utilizada como fonte de alimento em toda a sua região de ocorrência, sendo um importante componente na dieta de povo indígena e população rural do Brasil. O conhecimento da morfologia fornece bases para outras áreas de atuação, bem coamo, para o manejo biológico de animais silvestres. Devido à escassez na literatura de estudos anatômicos e morfológicos do aparelho respiratório da capivara, o objetivo deste trabalho é analisar os órgãos deste aparelho, macro e microscopicamente, para que possamos adquirir melhor conhecimento básico e compará-lo com o de animais da mesma subordem (Histricomorfos) e com outras espécies de mamíferos. Vimos que o aparelho respiratório da capivara é formado pelas narinas, fossas nasais, cavidade nasal, seios paranasais, faringe, laringe, traqueia e pulmões. O nariz se localiza em plano nasal com as narinas dispostas lateralmente. A maior parte da cavidade nasal está ocupada pelas conchas nasais, que se apresentam como estruturas em formato de espiral, com seus respectivos meatos. A laringe está delimitada por suas cartilagens e está em comunicação com a traqueia. A traqueia é um tubo cartilaginoso flexível e membranoso, com anéis incompletos em formato de “C”, que se bifurca em sua parte terminal, formando a carina traqueal. Os pulmões apresentam-se em pares, direito (com quatro lobos) e esquerdo (com dois lobos), localizados na cavidade torácica. As árvores brônquicas são formadas pelo brônquio primário e por uma sequência intrapulmonar que inclui brônquios intrapulmonares, bronquíolos, bronquíolos terminais e bronquíolos respiratórios.
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