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Nadkarni R, Han ZY, Anderson RJ, Allphin AJ, Clark DP, Badea A, Badea CT. High-resolution hybrid micro-CT imaging pipeline for mouse brain region segmentation and volumetric morphometry. PLoS One 2024; 19:e0303288. [PMID: 38781243 PMCID: PMC11115241 DOI: 10.1371/journal.pone.0303288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 04/23/2024] [Indexed: 05/25/2024] Open
Abstract
BACKGROUND Brain region segmentation and morphometry in humanized apolipoprotein E (APOE) mouse models with a human NOS2 background (HN) contribute to Alzheimer's disease (AD) research by demonstrating how various risk factors affect the brain. Photon-counting detector (PCD) micro-CT provides faster scan times than MRI, with superior contrast and spatial resolution to energy-integrating detector (EID) micro-CT. This paper presents a pipeline for mouse brain imaging, segmentation, and morphometry from PCD micro-CT. METHODS We used brains of 26 mice from 3 genotypes (APOE22HN, APOE33HN, APOE44HN). The pipeline included PCD and EID micro-CT scanning, hybrid (PCD and EID) iterative reconstruction, and brain region segmentation using the Small Animal Multivariate Brain Analysis (SAMBA) tool. We applied SAMBA to transfer brain region labels from our new PCD CT atlas to individual PCD brains via diffeomorphic registration. Region-based and voxel-based analyses were used for comparisons by genotype and sex. RESULTS Together, PCD and EID scanning take ~5 hours to produce images with a voxel size of 22 μm, which is faster than MRI protocols for mouse brain morphometry with voxel size above 40 μm. Hybrid iterative reconstruction generates PCD images with minimal artifacts and higher spatial resolution and contrast than EID images. Our PCD atlas is qualitatively and quantitatively similar to the prior MRI atlas and successfully transfers labels to PCD brains in SAMBA. Male and female mice had significant volume differences in 26 regions, including parts of the entorhinal cortex and cingulate cortex. APOE22HN brains were larger than APOE44HN brains in clusters from the hippocampus, a region where atrophy is associated with AD. CONCLUSIONS This work establishes a pipeline for mouse brain analysis using PCD CT, from staining to imaging and labeling brain images. Our results validate the effectiveness of the approach, setting a foundation for research on AD mouse models while reducing scanning durations.
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Affiliation(s)
- Rohan Nadkarni
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
| | - Zay Yar Han
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
| | - Robert J. Anderson
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
| | - Alex J. Allphin
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
| | - Darin P. Clark
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
| | - Alexandra Badea
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
| | - Cristian T. Badea
- Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
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Osterlund Oltmanns JR, Schaeffer EA, Blackwell AA, Lake RI, Einhaus RM, Kartje GL, Wallace DG. Age-related changes in the organization of spontaneously occurring behaviors. Behav Processes 2022; 201:104713. [PMID: 35901935 PMCID: PMC10436331 DOI: 10.1016/j.beproc.2022.104713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 07/19/2022] [Accepted: 07/23/2022] [Indexed: 11/19/2022]
Abstract
Age-related changes in spatial and temporal processing have been documented across a range of species. Rodent studies typically investigate differences in performance between adult and senescent animals; however, progressive loss of neurons in the hippocampus and cortex has been observed to occur as early as after adolescence. Therefore, the current study evaluated the effects of age in three- and ten-month-old female rats on the organization of movement in open field and food protection behaviors, two tasks that have previously dissociated hippocampal and cortical pathology. Age-related differences were observed in general measures of locomotion, spatial orientation, and attentional processing. The results of the current study are consistent with age-related changes in the processing of spatial information and motivation that occur earlier in life than previously anticipated. These observations establish a foundation for future studies evaluating interventions that influence these age-related differences in performance.
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Affiliation(s)
| | - E A Schaeffer
- Department of Psychology, Northern Illinois University, DeKalb, IL, USA
| | - A A Blackwell
- Department of Psychology, Northern Illinois University, DeKalb, IL, USA
| | - R I Lake
- Department of Psychology, Northern Illinois University, DeKalb, IL, USA
| | - R M Einhaus
- Department of Psychology, Northern Illinois University, DeKalb, IL, USA
| | - G L Kartje
- Research Service, Edward Hines Jr. VA Hospital, Hines, IL, USA; Department of Molecular Pharmacology and Neuroscience, Loyola University Chicago Health, Sciences Division, Maywood, IL, USA
| | - D G Wallace
- Department of Psychology, Northern Illinois University, DeKalb, IL, USA.
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Osterlund Oltmanns JR, Lipton MH, Adamczyk N, Lake RI, Blackwell AA, Schaeffer EA, Tsai SY, Kartje GL, Wallace DG. Organization of exploratory behavior under dark conditions in female and male rats. Behav Processes 2021; 189:104437. [PMID: 34089779 DOI: 10.1016/j.beproc.2021.104437] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 05/26/2021] [Accepted: 05/28/2021] [Indexed: 11/24/2022]
Abstract
Sexually dimorphic performance has been observed across humans and rodents in many spatial tasks. In general, these spatial tasks do not dissociate the use of environmental and self-movement cues. Previous work has demonstrated a role for self-movement cue processing in organizing open field behavior; however, these studies have not directly compared female and male movement characteristics. The current study examined the organization of open field behavior under dark conditions in female and male rats. Significant differences between female and male rats were observed in the location of stopping behavior relative to a cue and the topography exhibited during lateral movements. In contrast, no sex differences were observed on measures used to detect self-movement cue processing deficits. These results provide evidence that female and male rats are similar in their use of self-movement cues to organize open field behavior; however, other factors may be contributing to differences in performance.
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Affiliation(s)
| | - Megan H Lipton
- Psychology Department, Northern Illinois University, DeKalb Illinois, United States
| | - Natalie Adamczyk
- Psychology Department, Northern Illinois University, DeKalb Illinois, United States
| | - Rami I Lake
- Psychology Department, Northern Illinois University, DeKalb Illinois, United States
| | - Ashley A Blackwell
- Psychology Department, Northern Illinois University, DeKalb Illinois, United States
| | - Ericka A Schaeffer
- Psychology Department, Northern Illinois University, DeKalb Illinois, United States
| | - Shih-Yen Tsai
- Loyola University Health Sciences Division, Maywood, IL, United States; Edward Hines Jr. Veterans Affairs Hospital, Research Service, Hines, IL, United States
| | - Gwendolyn L Kartje
- Loyola University Health Sciences Division, Maywood, IL, United States; Edward Hines Jr. Veterans Affairs Hospital, Research Service, Hines, IL, United States
| | - Douglas G Wallace
- Psychology Department, Northern Illinois University, DeKalb Illinois, United States
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Smith PF, Agrawal Y, Darlington CL. Sexual dimorphism in vestibular function and dysfunction. J Neurophysiol 2019; 121:2379-2391. [PMID: 31042453 DOI: 10.1152/jn.00074.2019] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
It has been recognized for some time that females appear to be overrepresented in the incidence of many vestibular disorders, and recent epidemiological studies further support this idea. While it is possible that this is due to a reporting bias, another possibility is that there are actual differences in the incidence of vestibular dysfunction between males and females. If this is true, it could be due to a sexual dimorphism in vestibular function and therefore dysfunction, possibly related to the hormonal differences between females and males, although the higher incidence of vestibular dysfunction in females appears to last long after menopause. Many other neurochemical differences exist between males and females, however, that could be implicated in sexual dimorphism. This review critically explores the possibility of sexual dimorphism in vestibular function and dysfunction, and the implications it may have for the treatment of vestibular disorders.
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Affiliation(s)
- Paul F Smith
- Department of Pharmacology and Toxicology, School of Biomedical Sciences and the Brain Health Research Centre, University of Otago Medical School , Dunedin , New Zealand.,Brain Research New Zealand.,Eisdell Moore Centre for Hearing and Balance Research, University of Auckland , Auckland , New Zealand
| | - Yuri Agrawal
- Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins School of Medicine, Baltimore, Maryland
| | - Cynthia L Darlington
- Department of Pharmacology and Toxicology, School of Biomedical Sciences and the Brain Health Research Centre, University of Otago Medical School , Dunedin , New Zealand.,Brain Research New Zealand.,Eisdell Moore Centre for Hearing and Balance Research, University of Auckland , Auckland , New Zealand
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Lucas EK, Jegarl A, Clem RL. Mice lacking TrkB in parvalbumin-positive cells exhibit sexually dimorphic behavioral phenotypes. Behav Brain Res 2014; 274:219-25. [PMID: 25127683 DOI: 10.1016/j.bbr.2014.08.011] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Revised: 07/09/2014] [Accepted: 08/04/2014] [Indexed: 12/20/2022]
Abstract
Activity-dependent brain-derived neurotrophic factor (BDNF) signaling through receptor tyrosine kinase B (TrkB) is required for cued fear memory consolidation and extinction. Although BDNF is primarily secreted from glutamatergic neurons, TrkB is expressed by other genetically defined cells whose contributions to the behavioral effects of BDNF remain poorly understood. Parvalbumin (PV)-positive interneurons, which are highly enriched in TrkB, are emerging as key regulators of fear memory expression. We therefore hypothesized that activity-dependent BDNF signaling in PV-interneurons may modulate emotional learning. To test this hypothesis, we utilized the LoxP/Cre system for conditional deletion of TrkB in PV-positive cells to examine the impact of cell-autonomous BDNF signaling on Pavlovian fear conditioning and extinction. However, behavioral abnormalities indicative of vestibular dysfunction precluded the use of homozygous conditional knockouts in tests of higher cognitive functioning. While vestibular dysfunction was apparent in both sexes, female conditional knockouts exhibited an exacerbated phenotype, including extreme motor hyperactivity and circling behavior, compared to their male littermates. Heterozygous conditional knockouts were spared of vestibular dysfunction. While fear memory consolidation was unaffected in heterozygotes of both sexes, males exhibited impaired extinction consolidation compared to their littermate controls. Our findings complement evidence from human and rodent studies suggesting that BDNF signaling promotes consolidation of extinction and point to PV-positive neurons as a discrete population that mediates these effects in a sex-specific manner.
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Affiliation(s)
- Elizabeth K Lucas
- Fishberg Department of Neuroscience and the Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, Box 1065, New York, NY 10029, USA
| | - Anita Jegarl
- Fishberg Department of Neuroscience and the Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, Box 1065, New York, NY 10029, USA
| | - Roger L Clem
- Fishberg Department of Neuroscience and the Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, Box 1065, New York, NY 10029, USA.
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Osipov B, Harvati K, Nathena D, Spanakis K, Karantanas A, Kranioti EF. Sexual dimorphism of the bony labyrinth: a new age-independent method. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2013; 151:290-301. [PMID: 23640711 DOI: 10.1002/ajpa.22279] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2012] [Accepted: 03/19/2013] [Indexed: 11/06/2022]
Abstract
Currently in physical anthropology there is a need for reliable methods of sex estimation for immature individuals and highly fragmented remains. This study develops a sex estimation technique from discriminant function analysis of the bony labyrinth as it matures before puberty and can survive taphonomic conditions that would destroy most other skeletal material. The bony labyrinth contains the organs of hearing and balance. For this reason biologists and paleoanthropologists have undertaken research in this area to understand evolutionary changes in locomotion. Prior studies have found clear differences between species, but within-species variation has not been satisfactorily investigated. 3D segmentations of the left and right labyrinths of 94 individuals from a Cretan collection were generated and measured. Mean measurements of height, width, size, and shape indices were analyzed for sexual dimorphism, bilateral asymmetry, and measurement error. Significant sexual dimorphism was detected for several measurements. For sex estimation, the single best variable was the radius of curvature of the posterior semicircular canal, which achieved 76% accuracy. Two multivariate functions increased accuracy to 84%. Although these equations are less accurate than equations for complete long bones and crania, they appear to be as accurate as or better than other techniques for sexing immature individuals and temporal bones.
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Affiliation(s)
- Benjamin Osipov
- Edinburgh Unit for Forensic Anthropology, School of History Classics and Archaeology, University of Edinburgh, Edinburgh, UK
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Altuğ ME, Serarslan Y, Bal R, Kontaş T, Ekici F, Melek IM, Aslan H, Duman T. Caffeic acid phenethyl ester protects rabbit brains against permanent focal ischemia by antioxidant action: a biochemical and planimetric study. Brain Res 2008; 1201:135-42. [PMID: 18308295 DOI: 10.1016/j.brainres.2008.01.053] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2007] [Revised: 01/15/2008] [Accepted: 01/15/2008] [Indexed: 12/14/2022]
Abstract
The present study was conducted to investigate whether caffeic acid phenethyl ester (CAPE), an active component of propolis extract, has a protective effect on brain injury after focal permanent cerebral ischemia, and to determine the possible antioxidant mechanisms. Cerebral infarction in adult male New Zealand rabbits was induced by microsurgical procedures producing right focal permanent middle cerebral artery occlusion (pMCAO). CAPE was administered to the treatment group after pMCAO at a dose of 10 micromol kg(-1) once a day intraperitoneally for 7 days. Neurological deficits were evaluated, using a modified six-point scale. Spectrophotometric assay was used to determine the contents of malondialdehyde (MDA), glutathione (GSH), catalase (CAT), nitric oxide (NO) and xanthine oxidase (XO). In the ipsilateral hemisphere, the infarct volume of the brain was assessed in brain slices stained with heamatoxylen and eosin. The results showed that treatment with CAPE significantly reduced the percentage of infarction in the ipsilateral hemisphere compared with the ischemia group. CAPE treatment significantly attenuated the elevation of plasma MDA, CAT and XO content (p<0.05), whereas it significantly increased the levels of plasma GSH and NO (p<0.05). Therefore, subacute CAPE administration plays a protective role in focal pMCAO due to attenuation of lipid peroxidation and its antioxidant activity. All of these findings suggest that CAPE provides neuroprotection against cerebral ischemia injury through its antioxidant action.
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Affiliation(s)
- Muhammed Enes Altuğ
- Department of Surgery, Mustafa Kemal University Faculty of Veterinary Medicine, Tayfur Sökmen Kampusu, TR-31040 Hatay, Turkey
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