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Qi C, Zhou Y, Suenaga T, Oba K, Lu J, Wang G, Zhang L, Yoon S, Terada A. Organic carbon determines nitrous oxide consumption activity of clade I and II nosZ bacteria: Genomic and biokinetic insights. WATER RESEARCH 2022; 209:117910. [PMID: 34920314 DOI: 10.1016/j.watres.2021.117910] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 11/20/2021] [Accepted: 11/27/2021] [Indexed: 05/21/2023]
Abstract
Harnessing nitrous oxide (N2O)-reducing bacteria is a promising strategy to reduce the N2O footprint of engineered systems. Applying a preferred organic carbon source as an electron donor accelerates N2O consumption by these bacteria. However, their N2O consumption potential and activity when fed different organic carbon species remain unclear. Here, we systematically compared the effects of various organic carbon sources on the activity of N2O-reducing bacteria via investigation of their biokinetic properties and genomic potentials. Five organic carbon sources-acetate, succinate, glycerol, ethanol, and methanol-were fed to four N2O-reducing bacteria harboring either clade I or clade II nosZ gene. Respirometric analyses were performed with four N2O-reducing bacterial strains, identifying distinct shifts in DO- and N2O-consumption biokinetics in response to the different feeding schemes. Regardless of the N2O-reducing bacteria, higher N2O consumption rates, accompanied by higher biomass yields, were obtained with acetate and succinate. The biomass yield (15.45 ± 1.07 mg-biomass mmol-N2O-1) of Azospira sp. strain I13 (clade II nosZ) observed under acetate-fed condition was significantly higher than those of Paracoccus denitrificans and Pseudomonas stutzeri, exhibiting greater metabolic efficiency. However, the spectrum of the organic carbon species utilizable to Azospira sp. strain I13 was limited, as demonstrated by the highly variable N2O consumption rates observed with different substrates. The potential to metabolize the supplemented carbon sources was investigated by genomic analysis, the results of which corroborated the N2O consumption biokinetics results. Moreover, electron donor selection had a substantial impact on how N2O consumption activities were recovered after oxygen exposure. Collectively, our findings highlight the importance of choosing appropriate electron donor additives for increasing the N2O sink capability of biological nitrogen removal systems.
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Affiliation(s)
- Chuang Qi
- College of Food Science and Engineering, Nanjing University of Finance and Economics, Nanjing 210023, China; Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka Koganei, Tokyo 184-8588, Japan
| | - Yiwen Zhou
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka Koganei, Tokyo 184-8588, Japan
| | - Toshikazu Suenaga
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka Koganei, Tokyo 184-8588, Japan; Department of Chemical Engineering, Hiroshima University, Hiroshima 739-8527, Japan; Institute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumi-cho, Fuchu, Tokyo, 185-8538, Japan
| | - Kohei Oba
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka Koganei, Tokyo 184-8588, Japan
| | - Jilai Lu
- College of Food Science and Engineering, Nanjing University of Finance and Economics, Nanjing 210023, China
| | - Guoxiang Wang
- School of Environment, Nanjing Normal University, Nanjing 210023, China; Jiangsu Engineering Lab of Water and Soil Eco-remediation, Nanjing Normal University, Nanjing 210023, China
| | - Limin Zhang
- Jiangsu Engineering Lab of Water and Soil Eco-remediation, Nanjing Normal University, Nanjing 210023, China; Green Economy Development Institute, Nanjing University of Finance and Economics, Nanjing 210023, China
| | - Sukhwan Yoon
- Department of Civil and Environmental Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea
| | - Akihiko Terada
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka Koganei, Tokyo 184-8588, Japan; Institute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumi-cho, Fuchu, Tokyo, 185-8538, Japan.
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Xiao R, Ni BJ, Liu S, Lu H. Impacts of organics on the microbial ecology of wastewater anammox processes: Recent advances and meta-analysis. WATER RESEARCH 2021; 191:116817. [PMID: 33461083 DOI: 10.1016/j.watres.2021.116817] [Citation(s) in RCA: 82] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 12/16/2020] [Accepted: 01/05/2021] [Indexed: 05/25/2023]
Abstract
Anaerobic ammonium oxidation (anammox) represents a promising technology for wastewater nitrogen removal. Organics management is critical to achieving efficient and stable performance of anammox or integrated processes, e.g., denitratation-anammox. The aim of this systematic review is to synthesize the state-of-the-art knowledge on the multifaceted impacts of organics on wastewater anammox community structure and function. Both exogenous and endogenous organics are discussed with respect to their effects on the biofilm/granule structure and function, as well as the interactions between anammox bacteria (AnAOB) and a broad range of coexisting functional groups. A global core community consisting of 19 taxa is identified and a co-occurrence network is constructed by meta-analysis on the 16S rDNA sequences of 149 wastewater anammox samples. Correlations between core taxa, keystone taxa, and environmental factors, including COD, nitrogen loading rate (NLR) and C/N ratio are obtained. This review provides a holistic understanding of the microbial responses to different origins and types of organics in wastewater anammox reactors, which will facilitate the design and operation of more efficient anammox-based wastewater nitrogen removal process.
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Affiliation(s)
- Rui Xiao
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Province Key Laboratory for Water Pollution Control and Environmental Safety, Hangzhou 310058, China
| | - Bing-Jie Ni
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, NSW 2007, Australia
| | - Sitong Liu
- Department of Environmental Engineering, Peking University, Beijing 100871, China
| | - Huijie Lu
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Province Key Laboratory for Water Pollution Control and Environmental Safety, Hangzhou 310058, China.
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Molecular Biomarkers and Influential Factors of Denitrification in a Full-Scale Biological Nitrogen Removal Plant. Microorganisms 2019; 8:microorganisms8010011. [PMID: 31861619 PMCID: PMC7022890 DOI: 10.3390/microorganisms8010011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 12/16/2019] [Accepted: 12/17/2019] [Indexed: 11/21/2022] Open
Abstract
Three denitrifying bacteria, Paracoccus spp., Thauera spp., Pseudomonas-like spp., and two functional genes, nitrate reductase (narG and napA), were studied as potential biomarkers for total nitrogen removal. These bacterial genera and the functional genes showed significant negative correlations with total nitrogen in the effluent (TNeff). Thauera spp. had the highest correlation (r = −0.793, p < 0.001) with TNeff, and narG-like and napA genes also showed significant correlations (r = −0.663 and −0.643, respectively), suggesting functional genes have equal validity to 16S rRNA genes in monitoring denitrification performance. The most explanatory variables were a combination of constituents, with temperature emerging as the most important in Pearson’s correlation and redundancy analysis. Thauera spp. had the highest correlation with temperature (r = 0.739) followed closely by Paracoccus spp. (r = 0.705). Denitrification was also significantly affected by pH (r = 0.369), solids retention time (r = −0.377), total nitrogenin (r = 0.635), and organic matter in the influent (biochemical oxygen demand and chemical oxygen demand; r = 0.320 and 0.522, respectively). Our data verified that major denitrifiers’ 16S rRNA genes and nitrate reductase genes were better biomarkers than the biomass concentration, and any of the biomarkers could track denitrification in real time.
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Annavajhala MK, Kapoor V, Santo-Domingo J, Chandran K. Structural and Functional Interrogation of Selected Biological Nitrogen Removal Systems in the United States, Denmark, and Singapore Using Shotgun Metagenomics. Front Microbiol 2018; 9:2544. [PMID: 30416492 PMCID: PMC6212598 DOI: 10.3389/fmicb.2018.02544] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 10/05/2018] [Indexed: 01/24/2023] Open
Abstract
Conventional biological nitrogen removal (BNR), comprised of nitrification and denitrification, is traditionally employed in wastewater treatment plants (WWTPs) to prevent eutrophication in receiving water bodies. More recently, the combination of selective ammonia to nitrite oxidation (nitritation) and autotrophic anaerobic ammonia oxidation (anammox), collectively termed deammonification, has also emerged as a possible energy- and cost-effective BNR alternative. Herein, we analyzed microbial diversity and functional potential within 13 BNR processes in the United States, Denmark, and Singapore operated with varying reactor configuration, design, and operational parameters. Using next-generation sequencing and metagenomics, gene-coding regions were aligned against a custom protein database expanded to include all published aerobic ammonia oxidizing bacteria (AOB), nitrite oxidizing bacteria (NOB), anaerobic ammonia oxidizing bacteria (AMX), and complete ammonia oxidizing bacteria (CMX). Overall contributions of these N-cycle bacteria to the total functional potential of each reactor was determined, as well as that of several organisms associated with denitrification and/or structural integrity of microbial aggregates (biofilm or granules). The potential for these engineered processes to foster a broad spectrum of microbial catabolic, anabolic, and carbon assimilation transformations was elucidated. Seeded sidestream DEMON® deammonification systems and single-stage nitritation-anammox moving bed biofilm reactors (MBBRs) and a mainstream Cleargreen reactor designed to enrich in AOB and AMX showed lower enrichment in AMX functionality than an enriched two-stage nitritation-anammox MBBR system treating mainstream wastewater. Conventional BNR systems in Singapore and the United States had distinct metagenomes, especially relating to AOB. A hydrocyclone process designed to recycle biomass granules for mainstream BNR contained almost identical structural and functional characteristics in the overflow, underflow, and inflow of mixed liquor (ALT) rather than the expected selective enrichment of specific nitrifying or AMX organisms. Inoculum used to seed a sidestream deammonification process unexpectedly contained <10% of total coding regions assigned to AMX. These results suggest the operating conditions of engineered bioprocesses shape the resident microbial structure and function far more than the bioprocess configuration itself. We also highlight the advantage of a systems- and metagenomics-based interrogation of both the microbial structure and potential function therein over targeting of individual populations or specific genes.
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Affiliation(s)
- Medini K. Annavajhala
- Department of Earth and Environmental Engineering, Columbia University, New York, NY, United States
| | - Vikram Kapoor
- Department of Civil and Environmental Engineering, University of Texas, San Antonio, TX, United States
| | - Jorge Santo-Domingo
- U.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH, United States
| | - Kartik Chandran
- Department of Earth and Environmental Engineering, Columbia University, New York, NY, United States
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Sun Y, Shen D, Zhou X, Shi N, Tian Y. Microbial diversity and community structure of denitrifying biological filters operated with different carbon sources. SPRINGERPLUS 2016; 5:1752. [PMID: 27795895 PMCID: PMC5055511 DOI: 10.1186/s40064-016-3451-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Accepted: 09/29/2016] [Indexed: 11/24/2022]
Abstract
The treatment performance and spatial microbial community structure of three parallel denitrifying biological filters (DNBFs) operated with methanol, ethanol and acetate, respectively, were explored. The acetate-fed DNBF presented the highest denitrification rate and NOx-N (NO2-N and NO3-N) removal efficiency, while the methanol-fed DNBF showed the lowest carbon consumption and NOx-N removal efficiency. Distinct spatial distribution patterns of terminal restriction fragment length polymorphism fingerprints were observed among the DNBFs. The ethanol enhanced captured biofilms throughout the flowpath of DNBF had the highest diversity and evenness. The methanol-enhanced attached biofilm along the flowpath presented the highest evenness, but lowest richness and limited diversity. β-Proteobacteria was dominant in the microbial community in all of methanol, ethanol and acetate enhanced biofilm; however, different external carbon sources resulted in different dominant genera species. Thauera was dominant in the acetate enhanced bacterial community, while both Dechloromonas and Thauera were dominant in that of ethanol fed. However, methylotrophic bacteria (Methyloversatilis and Methylotenera) dominated exclusively in the methanol enhanced bacterial community throughout of the DNBF.
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Affiliation(s)
- Yingxue Sun
- Department of Environmental Science and Engineering, Beijing Technology and Business University, No. 11 Fucheng Road, HaiDian District, Beijing, 100048 People's Republic of China
| | - Dandan Shen
- Department of Environmental Science and Engineering, Beijing Technology and Business University, No. 11 Fucheng Road, HaiDian District, Beijing, 100048 People's Republic of China ; State Environmental Protection Key Laboratory of Microorganism Application and Risk Control (SMARC), School of Environment, Tsinghua University, Beijing, 100084 People's Republic of China
| | - Xiaoli Zhou
- Department of Environmental Science and Engineering, Beijing Technology and Business University, No. 11 Fucheng Road, HaiDian District, Beijing, 100048 People's Republic of China
| | - Na Shi
- Department of Environmental Science and Engineering, Beijing Technology and Business University, No. 11 Fucheng Road, HaiDian District, Beijing, 100048 People's Republic of China ; State Environmental Protection Key Laboratory of Microorganism Application and Risk Control (SMARC), School of Environment, Tsinghua University, Beijing, 100084 People's Republic of China
| | - Yuan Tian
- Department of Environmental Science and Engineering, Beijing Technology and Business University, No. 11 Fucheng Road, HaiDian District, Beijing, 100048 People's Republic of China
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Song K, Suenaga T, Harper WF, Hori T, Riya S, Hosomi M, Terada A. Effects of aeration and internal recycle flow on nitrous oxide emissions from a modified Ludzak-Ettinger process fed with glycerol. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2015; 22:19562-19570. [PMID: 26268623 DOI: 10.1007/s11356-015-5129-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Accepted: 07/27/2015] [Indexed: 06/04/2023]
Abstract
Nitrous oxide (N2O) is emitted from a modified Ludzak-Ettinger (MLE) process, as a primary activated sludge system, which requires mitigation. The effects of aeration rates and internal recycle flow (IRF) ratios on N2O emission were investigated in an MLE process fed with glycerol. Reducing the aeration rate from 1.5 to 0.5 L/min increased gaseous the N2O concentration from the aerobic tank and the dissolved N2O concentration in the anoxic tank by 54.4 and 53.4 %, respectively. During the period of higher aeration, the N2O-N conversion ratio was 0.9 % and the potential N2O reducers were predominantly Rhodobacter, which accounted for 21.8 % of the total population. Increasing the IRF ratio from 3.6 to 7.2 decreased the N2O emission rate from the aerobic tank and the dissolved N2O concentration in the anoxic tank by 56 and 48 %, respectively. This study suggests effective N2O mitigation strategies for MLE systems.
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Affiliation(s)
- Kang Song
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka, Koganei, Tokyo, 184-8588, Japan
- Research Fellow of Japan Society for the Promotion of Science, 5-3-1 Kojimachi, Chiyoda-ku, Tokyo, 102-0083, Japan
| | - Toshikazu Suenaga
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka, Koganei, Tokyo, 184-8588, Japan
| | - Willie F Harper
- Department of Systems Engineering and Management, Air Force Institute of Technology, Wright-Patterson Air Force Base, Dayton, OH, 45433, USA
| | - Tomoyuki Hori
- National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki, 305-8568, Japan
| | - Shohei Riya
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka, Koganei, Tokyo, 184-8588, Japan
| | - Masaaki Hosomi
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka, Koganei, Tokyo, 184-8588, Japan
| | - Akihiko Terada
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka, Koganei, Tokyo, 184-8588, Japan.
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Song K, Riya S, Hosomi M, Terada A. Effect of carbon sources on nitrous oxide emission in a modified Ludzak Ettinger process. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2015; 72:572-578. [PMID: 26247755 DOI: 10.2166/wst.2015.250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Effect of methanol and glycerol on nitrous oxide (N2O) emission in two laboratory-scale modified Ludzak Ettinger (MLE) processes was investigated during three distinct periods: dissolved oxygen (DO) control by intermittent aeration with a DO controller, and high and low aeration rates. N2O consumption rate in an anoxic tank and aeration mode influenced N2O emission rates from the MLE processes. In the DO control period, N2O emission rate from the glycerol-fed MLE process was higher than the methanol-fed counterpart, likely caused by a higher N2O consumption rate in an anoxic tank of the methanol-fed process. During the period of a higher aeration rate, N2O emission rates from both processes were comparable. In contrast, during the period of a lower aeration rate, N2O emission rate from the methanol-fed MLE process was higher than that from the glycerol-fed counterpart likely because of a higher degree of nitrite accumulation, corroborated by statistical analysis. N2O consumption activities of biomasses fed with the different carbon sources were distinct. However, the high activity did not necessarily result in a decrease in N2O emission rate from an aerobic tank and the effect of nitrite on the emission was stronger under the tested conditions.
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Affiliation(s)
- Kang Song
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Tokyo 184-8588, Japan E-mail:
| | - Shohei Riya
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Tokyo 184-8588, Japan E-mail:
| | - Masaaki Hosomi
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Tokyo 184-8588, Japan E-mail:
| | - Akihiko Terada
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Tokyo 184-8588, Japan E-mail:
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Lu H, Chandran K, Stensel D. Microbial ecology of denitrification in biological wastewater treatment. WATER RESEARCH 2014; 64:237-254. [PMID: 25078442 DOI: 10.1016/j.watres.2014.06.042] [Citation(s) in RCA: 360] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2013] [Revised: 06/26/2014] [Accepted: 06/29/2014] [Indexed: 05/03/2023]
Abstract
Globally, denitrification is commonly employed in biological nitrogen removal processes to enhance water quality. However, substantial knowledge gaps remain concerning the overall community structure, population dynamics and metabolism of different organic carbon sources. This systematic review provides a summary of current findings pertaining to the microbial ecology of denitrification in biological wastewater treatment processes. DNA fingerprinting-based analysis has revealed a high level of microbial diversity in denitrification reactors and highlighted the impacts of carbon sources in determining overall denitrifying community composition. Stable isotope probing, fluorescence in situ hybridization, microarrays and meta-omics further link community structure with function by identifying the functional populations and their gene regulatory patterns at the transcriptional and translational levels. This review stresses the need to integrate microbial ecology information into conventional denitrification design and operation at full-scale. Some emerging questions, from physiological mechanisms to practical solutions, for example, eliminating nitrous oxide emissions and supplementing more sustainable carbon sources than methanol, are also discussed. A combination of high-throughput approaches is next in line for thorough assessment of wastewater denitrifying community structure and function. Though denitrification is used as an example here, this synergy between microbial ecology and process engineering is applicable to other biological wastewater treatment processes.
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Affiliation(s)
- Huijie Lu
- Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 205 N Mathews, Urbana, IL 61801, USA.
| | - Kartik Chandran
- Department of Earth and Environmental Engineering, Columbia University, 500 West 120th Street, New York, NY 10027, USA.
| | - David Stensel
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195, USA
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Lu H, Kalyuzhnaya M, Chandran K. Comparative proteomic analysis reveals insights into anoxic growth ofMethyloversatilis universalis FAM5 on methanol and ethanol. Environ Microbiol 2012; 14:2935-45. [DOI: 10.1111/j.1462-2920.2012.02857.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2011] [Revised: 05/23/2012] [Accepted: 07/23/2012] [Indexed: 11/28/2022]
Affiliation(s)
- Huijie Lu
- Department of Earth and Environmental Engineering; Columbia University; New York; NY; 10027; USA
| | - Marina Kalyuzhnaya
- Department of Microbiology; University of Washington; Seattle; WA; 98105; USA
| | - Kartik Chandran
- Department of Earth and Environmental Engineering; Columbia University; New York; NY; 10027; USA
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Michán C, Ramos JL, Daniels C. Explorative probes and biomarkers, chronic Salmonella infections and future vaccines. Microb Biotechnol 2011; 5:1-4. [PMID: 22103324 PMCID: PMC3815267 DOI: 10.1111/j.1751-7915.2011.00315.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Affiliation(s)
- Carmen Michán
- Universidad de Córdoba, Campus de Rabanales, Department of Biochemistry and Molecular Biology, Edificio Severo Ochoa C-6, 2aPlanta, 14071, Córdoba, Spain
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