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Number Cited by Other Article(s)
1
Wang X, Zhang Z, Shi Y, Man J, Huang Y, Zhang X, Liu S, He G, An K, Amu L, Chen W, Liu Z, Wang X, Wei S. Population identification and genetic diversity analysis of Fritillaria ussuriensis (Fritillaria) based on chloroplast genes atpF and petB. J Appl Genet 2024;65:453-462. [PMID: 38684618 DOI: 10.1007/s13353-024-00874-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 04/15/2024] [Accepted: 04/23/2024] [Indexed: 05/02/2024]
2
Samson S, Lord É, Makarenkov V. Assessing the emergence time of SARS-CoV-2 zoonotic spillover. PLoS One 2024;19:e0301195. [PMID: 38574109 PMCID: PMC10994396 DOI: 10.1371/journal.pone.0301195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 03/12/2024] [Indexed: 04/06/2024]  Open
3
Samson S, Lord É, Makarenkov V. SimPlot ++: a Python application for representing sequence similarity and detecting recombination. Bioinformatics 2022;38:3118-3120. [PMID: 35451456 DOI: 10.1093/bioinformatics/btac287] [Citation(s) in RCA: 33] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 03/29/2022] [Accepted: 04/18/2022] [Indexed: 11/14/2022]  Open
4
Makarenkov V, Mazoure B, Rabusseau G, Legendre P. Horizontal gene transfer and recombination analysis of SARS-CoV-2 genes helps discover its close relatives and shed light on its origin. BMC Ecol Evol 2021;21:5. [PMID: 33514319 PMCID: PMC7817968 DOI: 10.1186/s12862-020-01732-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 12/08/2020] [Indexed: 12/30/2022]  Open
5
Layeghifard M, Peres-Neto PR, Makarenkov V. Inferring explicit weighted consensus networks to represent alternative evolutionary histories. BMC Evol Biol 2013;13:274. [PMID: 24359207 PMCID: PMC3898054 DOI: 10.1186/1471-2148-13-274] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2013] [Accepted: 12/16/2013] [Indexed: 11/20/2022]  Open
6
Guénard G, Legendre P, Peres-Neto P. Phylogenetic eigenvector maps: a framework to model and predict species traits. Methods Ecol Evol 2013. [DOI: 10.1111/2041-210x.12111] [Citation(s) in RCA: 80] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Webster M, Zelditch ML. Evolutionary Lability of Integration in Cambrian Ptychoparioid Trilobites. Evol Biol 2011. [DOI: 10.1007/s11692-011-9110-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
8
Poczai P, Hyvönen J. On the origin of Solanum nigrum: can networks help? Mol Biol Rep 2011;38:1171-85. [PMID: 20574711 DOI: 10.1007/s11033-010-0215-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2010] [Accepted: 06/11/2010] [Indexed: 10/25/2022]
9
Webster M, Zelditch ML. Modularity of a Cambrian ptychoparioid trilobite cranidium. Evol Dev 2011;13:96-109. [DOI: 10.1111/j.1525-142x.2010.00459.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
10
Zelditch ML, Wood AR, Bonett RM, Swiderski DL. Modularity of the rodent mandible: Integrating bones, muscles, and teeth. Evol Dev 2008;10:756-68. [DOI: 10.1111/j.1525-142x.2008.00290.x] [Citation(s) in RCA: 101] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
Zelditch ML, Wood AR, Swiderski DL. Building Developmental Integration into Functional Systems: Function-Induced Integration of Mandibular Shape. Evol Biol 2008. [DOI: 10.1007/s11692-008-9034-7] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
12
Ayling SC, Brown TA. Novel methodology for construction and pruning of quasi-median networks. BMC Bioinformatics 2008;9:115. [PMID: 18298812 PMCID: PMC2267707 DOI: 10.1186/1471-2105-9-115] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2007] [Accepted: 02/25/2008] [Indexed: 11/10/2022]  Open
13
Plant evolution by means of hybridization. SYST BIODIVERS 2007. [DOI: 10.1017/s1477200007002381] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
14
Makarenkov V, Kevorkov D, Legendre P. Phylogenetic Network Construction Approaches. APPLIED MYCOLOGY AND BIOTECHNOLOGY 2006. [DOI: 10.1016/s1874-5334(06)80006-7] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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